Wall clock time and date at job start Tue Mar 31 2020 01:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35135 * 126.44174 * 2 1 4 4 O 1.33930 * 108.76678 * 179.97438 * 3 2 1 5 5 C 1.34918 * 109.38467 * 359.97438 * 4 3 2 6 6 C 1.46650 * 125.98524 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99791 * 173.47933 * 6 5 4 8 8 N 1.34775 * 120.00184 * 353.75676 * 6 5 4 9 9 C 1.46922 * 120.63152 * 3.40185 * 8 6 5 10 10 C 1.52760 * 109.01099 * 233.58483 * 9 8 6 11 11 C 1.53045 * 109.38194 * 305.58683 * 10 9 8 12 12 C 1.53047 * 109.53596 * 61.24098 * 11 10 9 13 13 H 1.08999 * 109.49567 * 58.58504 * 12 11 10 14 14 N 1.46498 * 109.52117 * 178.66446 * 12 11 10 15 15 C 1.36944 * 119.99817 * 204.85121 * 14 12 11 16 16 H 1.07994 * 120.00073 * 0.02562 * 15 14 12 17 17 C 1.38812 * 119.99890 * 180.02562 * 15 14 12 18 18 N 1.31620 * 120.00103 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00105 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47360 * 89.99781 * 19 17 15 21 21 H 1.48496 * 109.47347 * 210.00041 * 19 17 15 22 22 H 1.48505 * 109.47190 * 330.00496 * 19 17 15 23 23 C 1.46933 * 120.63113 * 183.68434 * 8 6 5 24 24 C 1.36540 * 108.02488 * 0.24321 * 5 4 3 25 25 H 1.09001 * 109.47321 * 90.02492 * 1 2 3 26 26 H 1.08995 * 109.47315 * 210.02610 * 1 2 3 27 27 H 1.09002 * 109.46890 * 330.02389 * 1 2 3 28 28 H 1.07996 * 125.61568 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.58783 * 353.42290 * 9 8 6 30 30 H 1.09003 * 109.58659 * 113.84272 * 9 8 6 31 31 H 1.08996 * 109.56733 * 185.55732 * 10 9 8 32 32 H 1.08996 * 109.38706 * 65.51312 * 10 9 8 33 33 H 1.08998 * 109.46543 * 301.22137 * 11 10 9 34 34 H 1.09005 * 109.45999 * 181.25758 * 11 10 9 35 35 H 0.97003 * 120.00208 * 24.85460 * 14 12 11 36 36 H 0.96995 * 120.00295 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.58381 * 246.15665 * 23 8 6 38 38 H 1.09005 * 109.58535 * 6.58086 * 23 8 6 39 39 H 1.08000 * 126.65038 * 179.75876 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0006 5 6 3.6260 -0.6681 0.0015 6 6 4.8379 -1.4940 0.0018 7 8 4.7509 -2.7019 0.1224 8 7 6.0481 -0.9149 -0.1258 9 6 6.1751 0.5474 -0.1914 10 6 6.9677 0.9224 -1.4423 11 6 8.3030 0.1746 -1.4407 12 6 8.0449 -1.3337 -1.4644 13 1 7.4637 -1.5895 -2.3504 14 7 9.3232 -2.0487 -1.4951 15 6 9.3883 -3.3129 -2.0174 16 1 8.4974 -3.7827 -2.4071 17 6 10.5994 -3.9906 -2.0460 18 7 10.6621 -5.2055 -2.5485 19 14 12.1406 -3.1777 -1.3726 20 1 12.2790 -3.4982 0.0708 21 1 13.3280 -3.6824 -2.1078 22 1 12.0400 -1.7062 -1.5454 23 6 7.2651 -1.7341 -0.2081 24 6 2.3408 -1.1292 -0.0040 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 1.9770 2.1145 0.0004 29 1 5.1840 0.9985 -0.2395 30 1 6.7006 0.9086 0.6927 31 1 7.1524 1.9966 -1.4490 32 1 6.3969 0.6458 -2.3287 33 1 8.8630 0.4331 -0.5420 34 1 8.8791 0.4583 -2.3215 35 1 10.1235 -1.6266 -1.1454 36 1 11.5084 -5.6789 -2.5688 37 1 7.8813 -1.5627 0.6746 38 1 6.9929 -2.7879 -0.2674 39 1 2.0266 -2.1624 -0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999962353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:22 Heat of formation + Delta-G solvation = -20.123536 kcal Electronic energy + Delta-G solvation = -21764.047538 eV Core-core repulsion = 18480.130663 eV Total energy + Delta-G solvation = -3283.916875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.79036 -41.04857 -38.86655 -36.45719 -35.19188 -34.02578 -33.00438 -31.75242 -30.48434 -28.22927 -26.79409 -25.69921 -23.82412 -23.19968 -22.11945 -21.61421 -20.39366 -19.58993 -18.40605 -17.76548 -17.47186 -17.02034 -16.61649 -16.18375 -15.68855 -15.51583 -15.21978 -14.90298 -14.51923 -14.29045 -14.22105 -13.95720 -13.93361 -13.87880 -13.63118 -13.15602 -12.96082 -12.63216 -12.54555 -12.10101 -11.97721 -11.85972 -11.71756 -11.42610 -11.36231 -11.10647 -10.74441 -9.99265 -9.55613 -9.28342 -8.05847 -5.42761 0.00180 1.35068 1.36267 1.41643 1.48234 1.51230 1.97973 2.10498 2.46367 3.24514 3.38531 3.51381 3.79381 3.91072 3.99920 4.06358 4.10147 4.22548 4.29927 4.31989 4.59811 4.62864 4.68329 4.79791 4.80920 4.90148 4.94054 5.03805 5.05993 5.08276 5.18145 5.31087 5.39046 5.44263 5.56532 5.72487 5.88026 6.17388 6.28689 6.88776 7.02884 7.74577 7.97555 9.15899 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033719 B = 0.004011 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.200568 B = 6978.806700 C = 7548.851386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.206 4.206 3 C 0.004 3.996 4 O -0.153 6.153 5 C -0.096 4.096 6 C 0.585 3.415 7 O -0.576 6.576 8 N -0.595 5.595 9 C 0.085 3.915 10 C -0.119 4.119 11 C -0.121 4.121 12 C 0.170 3.830 13 H 0.031 0.969 14 N -0.742 5.742 15 C -0.241 4.241 16 H 0.044 0.956 17 C -0.064 4.064 18 N -0.985 5.985 19 Si 0.964 3.036 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.242 1.242 23 C 0.104 3.896 24 C -0.126 4.126 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.258 0.742 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.372 0.628 36 H 0.259 0.741 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.770 23.080 6.989 29.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.207 4.207 3 C -0.064 4.064 4 O -0.050 6.050 5 C -0.147 4.147 6 C 0.375 3.625 7 O -0.458 6.458 8 N -0.326 5.326 9 C -0.035 4.035 10 C -0.158 4.158 11 C -0.159 4.159 12 C 0.060 3.940 13 H 0.049 0.951 14 N -0.385 5.385 15 C -0.372 4.372 16 H 0.062 0.938 17 C -0.255 4.255 18 N -0.634 5.634 19 Si 0.790 3.210 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.166 1.166 23 C -0.021 4.021 24 C -0.147 4.147 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.274 0.726 29 H 0.142 0.858 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.206 0.794 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.567 22.445 6.935 29.333 hybrid contribution 1.010 -1.084 0.096 1.485 sum -16.556 21.361 7.031 27.926 Atomic orbital electron populations 1.20259 0.86568 1.03881 1.03100 1.20812 0.99115 0.91491 1.09290 1.25341 0.79348 1.01702 0.99991 1.84134 1.29591 1.20098 1.71141 1.21500 0.94918 0.81518 1.16741 1.17237 0.82329 0.86139 0.76798 1.90858 1.86355 1.15200 1.53392 1.48217 1.05154 1.09164 1.70062 1.22576 1.04071 0.77040 0.99806 1.21788 0.94610 1.02098 0.97290 1.21816 0.98716 0.92025 1.03391 1.20624 0.86075 0.93011 0.94250 0.95123 1.42622 1.06384 1.15358 1.74149 1.18963 0.94930 0.91397 1.31882 0.93754 1.25632 1.01409 0.96811 1.01672 1.69915 1.26522 1.14075 1.52927 0.85293 0.78357 0.79513 0.77869 1.20373 1.22141 1.16622 1.22340 0.84618 0.94861 1.00329 1.22066 0.91038 1.01371 1.00218 0.90590 0.91687 0.89010 0.72615 0.85820 0.89123 0.86419 0.92384 0.90197 0.90934 0.79409 0.93178 0.90710 0.93324 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.39 71.24 0.74 -0.08 16 2 C -0.21 -3.39 6.14 -20.06 -0.12 -3.51 16 3 C 0.00 0.06 12.00 67.10 0.81 0.86 16 4 O -0.15 -2.96 7.06 -5.08 -0.04 -2.99 16 5 C -0.10 -2.64 6.86 24.07 0.17 -2.48 16 6 C 0.59 21.12 7.66 86.44 0.66 21.79 16 7 O -0.58 -26.20 16.30 -4.36 -0.07 -26.27 16 8 N -0.60 -19.29 2.98 -824.46 -2.46 -21.75 16 9 C 0.08 1.84 6.29 86.22 0.54 2.38 16 10 C -0.12 -2.43 6.07 30.53 0.19 -2.24 16 11 C -0.12 -3.30 5.36 30.62 0.16 -3.14 16 12 C 0.17 6.68 2.92 45.07 0.13 6.81 16 13 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 14 N -0.74 -35.19 4.93 -322.57 -1.59 -36.78 16 15 C -0.24 -14.34 10.41 84.03 0.88 -13.46 16 16 H 0.04 2.99 8.06 -2.91 -0.02 2.97 16 17 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 18 N -0.98 -65.22 13.97 21.65 0.30 -64.92 16 19 Si 0.96 45.67 27.73 68.60 1.90 47.57 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.24 -10.01 6.52 99.48 0.65 -9.36 16 23 C 0.10 4.05 6.01 86.36 0.52 4.57 16 24 C -0.13 -3.14 10.58 22.39 0.24 -2.90 16 25 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.26 0.35 8.06 -2.91 -0.02 0.32 16 29 H 0.12 2.32 3.75 -57.92 -0.22 2.10 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.37 16.26 5.66 -92.71 -0.52 15.74 16 36 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.05 2.36 7.03 -2.38 -0.02 2.35 16 39 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -81.68 320.17 3.69 -77.99 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.27 Total: 21.95 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.37 Total: 5.21 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -3.74 Total: -123.45 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.11 Total: -29.26 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.57 kcal Total: -81.68 3.69 -77.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999962353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.864 kcal (2) G-P(sol) polarization free energy of solvation -81.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds