Wall clock time and date at job start Tue Mar 31 2020 00:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35127 * 125.61701 * 2 1 4 4 C 1.40369 * 107.11486 * 180.02562 * 3 2 1 5 5 C 1.36537 * 106.70619 * 0.26392 * 4 3 2 6 6 C 1.46662 * 125.98561 * 179.69943 * 5 4 3 7 7 O 1.21695 * 120.00176 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99876 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99817 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.49913 * 325.00063 * 9 8 6 11 11 C 1.53046 * 109.49767 * 204.93643 * 9 8 6 12 12 C 1.53033 * 109.54150 * 178.68224 * 11 9 8 13 13 C 1.53199 * 109.31245 * 61.36261 * 12 11 9 14 14 N 1.46922 * 108.77608 * 305.37150 * 13 12 11 15 15 C 1.36936 * 120.62937 * 233.60365 * 14 13 12 16 16 H 1.08005 * 119.99608 * 27.68519 * 15 14 13 17 17 C 1.38811 * 120.00414 * 207.68250 * 15 14 13 18 18 N 1.31622 * 119.99656 * 17.35242 * 17 15 14 19 19 Si 1.86800 * 120.00278 * 197.35505 * 17 15 14 20 20 H 1.48504 * 109.47040 * 89.99721 * 19 17 15 21 21 H 1.48499 * 109.46931 * 209.99985 * 19 17 15 22 22 H 1.48505 * 109.47116 * 330.00083 * 19 17 15 23 23 C 1.46934 * 118.76759 * 53.58252 * 14 13 12 24 24 O 1.33928 * 125.61645 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47014 * 89.99809 * 1 2 3 26 26 H 1.08996 * 109.47056 * 209.99636 * 1 2 3 27 27 H 1.08996 * 109.46747 * 330.00137 * 1 2 3 28 28 H 1.07998 * 126.44520 * 0.02562 * 3 2 1 29 29 H 1.08004 * 126.64270 * 180.02562 * 4 3 2 30 30 H 0.97003 * 120.00456 * 0.02562 * 8 6 5 31 31 H 1.08997 * 109.45907 * 298.70946 * 11 9 8 32 32 H 1.09008 * 109.45853 * 58.66250 * 11 9 8 33 33 H 1.08996 * 109.50397 * 181.31548 * 12 11 9 34 34 H 1.09002 * 109.49738 * 301.38555 * 12 11 9 35 35 H 1.09001 * 109.58303 * 65.15312 * 13 12 11 36 36 H 1.08996 * 109.58758 * 185.43325 * 13 12 11 37 37 H 0.97001 * 120.00075 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.61708 * 186.64394 * 23 14 13 39 39 H 1.08997 * 109.55911 * 66.21542 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6530 -0.0006 5 6 3.5823 -0.7116 -0.0070 6 6 4.7414 -1.6101 -0.0161 7 8 5.8680 -1.1500 -0.0181 8 7 4.5589 -2.9455 -0.0212 9 6 5.7168 -3.8430 -0.0297 10 1 6.5176 -3.3981 -0.6203 11 6 5.3166 -5.1872 -0.6423 12 6 6.5336 -6.1142 -0.6818 13 6 7.0284 -6.3620 0.7467 14 7 7.2777 -5.0660 1.3923 15 6 8.4894 -4.7960 1.9701 16 1 9.3821 -5.2818 1.6046 17 6 8.5705 -3.8980 3.0256 18 7 7.4855 -3.5681 3.6936 19 14 10.2193 -3.1578 3.4977 20 1 10.4335 -1.9006 2.7369 21 1 10.2314 -2.8640 4.9532 22 1 11.3039 -4.1206 3.1780 23 6 6.2026 -4.0644 1.4061 24 8 2.2869 -1.0887 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9613 2.1260 0.0004 29 1 4.5113 1.2703 -0.0004 30 1 3.6609 -3.3124 -0.0192 31 1 4.5325 -5.6428 -0.0376 32 1 4.9476 -5.0290 -1.6557 33 1 6.2536 -7.0630 -1.1395 34 1 7.3269 -5.6484 -1.2664 35 1 6.2697 -6.9090 1.3064 36 1 7.9507 -6.9421 0.7185 37 1 7.5421 -2.9409 4.4314 38 1 6.5814 -3.1266 1.8123 39 1 5.3768 -4.4239 2.0200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006677483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:48 Heat of formation + Delta-G solvation = -5.731516 kcal Electronic energy + Delta-G solvation = -21838.383285 eV Core-core repulsion = 18555.090495 eV Total energy + Delta-G solvation = -3283.292790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.66853 -39.28905 -37.25677 -34.24554 -33.29192 -32.63089 -32.03083 -30.04727 -29.15402 -26.95148 -25.25297 -22.99282 -22.13730 -21.61890 -21.16783 -19.95945 -19.40777 -17.93853 -16.76585 -16.42378 -15.59250 -15.47393 -14.87842 -14.20911 -14.09284 -13.89147 -13.49289 -13.41027 -13.20084 -13.09910 -12.97383 -12.91332 -12.39054 -12.30598 -12.08854 -11.85187 -11.00628 -10.77931 -10.71042 -10.47854 -10.23908 -10.08632 -10.01851 -9.92497 -9.67641 -9.51054 -8.68973 -8.40929 -8.39870 -6.64505 -5.73365 -3.16898 1.15595 2.33884 2.64989 3.43208 3.47817 3.52065 3.52830 3.55626 4.53082 4.57054 4.90031 4.90199 5.16134 5.18235 5.35637 5.40967 5.42164 5.54992 5.63225 5.66042 5.70456 5.82567 5.94666 6.08009 6.15336 6.33517 6.36709 6.42846 6.48015 6.69524 6.75846 6.83022 6.92747 6.98030 7.30768 7.73543 7.83261 7.88950 8.46822 8.51574 9.24768 9.88912 10.43599 11.34721 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.004986 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.340580 B = 5614.543127 C = 6615.217608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.007 3.993 3 C -0.222 4.222 4 C -0.126 4.126 5 C -0.067 4.067 6 C 0.597 3.403 7 O -0.511 6.511 8 N -0.708 5.708 9 C 0.115 3.885 10 H 0.085 0.915 11 C -0.116 4.116 12 C -0.131 4.131 13 C 0.142 3.858 14 N -0.588 5.588 15 C -0.258 4.258 16 H 0.067 0.933 17 C 0.007 3.993 18 N -0.899 5.899 19 Si 0.902 3.098 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.166 3.834 24 O -0.163 6.163 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.159 0.841 30 H 0.397 0.603 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.056 0.944 37 H 0.254 0.746 38 H 0.096 0.904 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.720 4.328 -9.252 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.045 4.045 3 C -0.241 4.241 4 C -0.147 4.147 5 C -0.119 4.119 6 C 0.381 3.619 7 O -0.388 6.388 8 N -0.357 5.357 9 C 0.010 3.990 10 H 0.103 0.897 11 C -0.154 4.154 12 C -0.171 4.171 13 C 0.016 3.984 14 N -0.311 5.311 15 C -0.387 4.387 16 H 0.085 0.915 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.732 3.268 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.039 3.961 24 O -0.059 6.059 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.171 0.829 29 H 0.177 0.823 30 H 0.231 0.769 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -13.963 4.409 -9.085 17.232 hybrid contribution 0.326 0.526 0.352 0.712 sum -13.637 4.935 -8.734 16.929 Atomic orbital electron populations 1.20368 0.84784 1.04373 1.03685 1.22747 0.94201 0.84266 1.03298 1.21554 0.92439 0.99624 1.10506 1.21939 0.98539 0.93112 1.01079 1.22349 0.81703 0.94902 1.12919 1.16539 0.85855 0.81856 0.77607 1.90927 1.21770 1.75912 1.50194 1.46005 1.10701 1.05307 1.73732 1.22083 0.86641 0.88030 1.02212 0.89710 1.21678 0.98744 0.95516 0.99478 1.22004 0.97081 0.97865 1.00100 1.20957 0.98145 0.88875 0.90435 1.43963 1.12653 1.09421 1.65062 1.19169 0.84880 1.24455 1.10221 0.91506 1.25036 0.97026 1.01539 0.95626 1.70019 1.27386 1.35943 1.20971 0.86295 0.83578 0.79686 0.77245 1.21207 1.21773 1.20389 1.21108 0.90171 0.95847 0.88981 1.83996 1.16166 1.34910 1.70845 0.89825 0.90223 0.89137 0.82887 0.82291 0.76931 0.92151 0.92994 0.92544 0.92051 0.96385 0.92560 0.93620 0.88633 0.96352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.41 36.01 0.37 -0.13 16 2 C 0.01 0.08 7.31 -35.42 -0.26 -0.18 16 3 C -0.22 -2.58 10.77 -39.89 -0.43 -3.01 16 4 C -0.13 -1.85 10.62 -39.39 -0.42 -2.27 16 5 C -0.07 -1.09 7.13 -36.80 -0.26 -1.35 16 6 C 0.60 11.53 7.75 -12.86 -0.10 11.43 16 7 O -0.51 -11.89 16.53 5.19 0.09 -11.81 16 8 N -0.71 -12.56 5.08 -55.00 -0.28 -12.84 16 9 C 0.12 2.32 2.60 -67.81 -0.18 2.14 16 10 H 0.08 1.91 7.58 -51.93 -0.39 1.51 16 11 C -0.12 -1.91 5.35 -26.69 -0.14 -2.06 16 12 C -0.13 -2.23 6.08 -26.61 -0.16 -2.40 16 13 C 0.14 2.98 6.51 -3.71 -0.02 2.96 16 14 N -0.59 -15.18 3.00 -172.32 -0.52 -15.69 16 15 C -0.26 -7.33 9.59 -15.06 -0.14 -7.48 16 16 H 0.07 1.85 7.89 -52.48 -0.41 1.44 16 17 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 18 N -0.90 -27.27 11.19 55.49 0.62 -26.65 16 19 Si 0.90 22.77 29.59 -169.99 -5.03 17.74 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.17 4.14 4.88 -3.71 -0.02 4.12 16 24 O -0.16 -2.30 10.40 5.01 0.05 -2.24 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.16 2.24 8.06 -52.48 -0.42 1.82 16 30 H 0.40 5.86 8.36 -40.82 -0.34 5.52 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 37 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.10 2.80 6.04 -51.93 -0.31 2.49 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -33.72 326.53 -7.65 -41.38 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.66 Total: 3.29 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -1.85 Total: 1.91 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.17 Total: -55.19 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.14 Total: -14.05 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.72 -7.65 -41.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006677483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.644 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds