Wall clock time and date at job start Tue Mar 31 2020 00:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35127 * 125.61701 * 2 1 4 4 C 1.40369 * 107.11486 * 180.02562 * 3 2 1 5 5 C 1.36537 * 106.70619 * 0.26392 * 4 3 2 6 6 C 1.46662 * 125.98561 * 179.69943 * 5 4 3 7 7 O 1.21695 * 120.00176 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99876 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99817 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.49913 * 325.00063 * 9 8 6 11 11 C 1.53046 * 109.49767 * 204.93643 * 9 8 6 12 12 C 1.53033 * 109.54150 * 178.68224 * 11 9 8 13 13 C 1.53199 * 109.31245 * 61.36261 * 12 11 9 14 14 N 1.46922 * 108.77608 * 305.37150 * 13 12 11 15 15 C 1.36936 * 120.62937 * 233.60365 * 14 13 12 16 16 H 1.08005 * 119.99608 * 27.68519 * 15 14 13 17 17 C 1.38811 * 120.00414 * 207.68250 * 15 14 13 18 18 N 1.31622 * 119.99656 * 17.35242 * 17 15 14 19 19 Si 1.86800 * 120.00278 * 197.35505 * 17 15 14 20 20 H 1.48504 * 109.47040 * 89.99721 * 19 17 15 21 21 H 1.48499 * 109.46931 * 209.99985 * 19 17 15 22 22 H 1.48505 * 109.47116 * 330.00083 * 19 17 15 23 23 C 1.46934 * 118.76759 * 53.58252 * 14 13 12 24 24 O 1.33928 * 125.61645 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47014 * 89.99809 * 1 2 3 26 26 H 1.08996 * 109.47056 * 209.99636 * 1 2 3 27 27 H 1.08996 * 109.46747 * 330.00137 * 1 2 3 28 28 H 1.07998 * 126.44520 * 0.02562 * 3 2 1 29 29 H 1.08004 * 126.64270 * 180.02562 * 4 3 2 30 30 H 0.97003 * 120.00456 * 0.02562 * 8 6 5 31 31 H 1.08997 * 109.45907 * 298.70946 * 11 9 8 32 32 H 1.09008 * 109.45853 * 58.66250 * 11 9 8 33 33 H 1.08996 * 109.50397 * 181.31548 * 12 11 9 34 34 H 1.09002 * 109.49738 * 301.38555 * 12 11 9 35 35 H 1.09001 * 109.58303 * 65.15312 * 13 12 11 36 36 H 1.08996 * 109.58758 * 185.43325 * 13 12 11 37 37 H 0.97001 * 120.00075 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.61708 * 186.64394 * 23 14 13 39 39 H 1.08997 * 109.55911 * 66.21542 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6530 -0.0006 5 6 3.5823 -0.7116 -0.0070 6 6 4.7414 -1.6101 -0.0161 7 8 5.8680 -1.1500 -0.0181 8 7 4.5589 -2.9455 -0.0212 9 6 5.7168 -3.8430 -0.0297 10 1 6.5176 -3.3981 -0.6203 11 6 5.3166 -5.1872 -0.6423 12 6 6.5336 -6.1142 -0.6818 13 6 7.0284 -6.3620 0.7467 14 7 7.2777 -5.0660 1.3923 15 6 8.4894 -4.7960 1.9701 16 1 9.3821 -5.2818 1.6046 17 6 8.5705 -3.8980 3.0256 18 7 7.4855 -3.5681 3.6936 19 14 10.2193 -3.1578 3.4977 20 1 10.4335 -1.9006 2.7369 21 1 10.2314 -2.8640 4.9532 22 1 11.3039 -4.1206 3.1780 23 6 6.2026 -4.0644 1.4061 24 8 2.2869 -1.0887 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9613 2.1260 0.0004 29 1 4.5113 1.2703 -0.0004 30 1 3.6609 -3.3124 -0.0192 31 1 4.5325 -5.6428 -0.0376 32 1 4.9476 -5.0290 -1.6557 33 1 6.2536 -7.0630 -1.1395 34 1 7.3269 -5.6484 -1.2664 35 1 6.2697 -6.9090 1.3064 36 1 7.9507 -6.9421 0.7185 37 1 7.5421 -2.9409 4.4314 38 1 6.5814 -3.1266 1.8123 39 1 5.3768 -4.4239 2.0200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006677483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:46 Heat of formation + Delta-G solvation = -29.101930 kcal Electronic energy + Delta-G solvation = -21839.396702 eV Core-core repulsion = 18555.090495 eV Total energy + Delta-G solvation = -3284.306207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.72593 -40.85513 -38.95855 -35.95996 -34.59984 -34.17450 -32.97988 -31.94683 -30.73381 -28.00899 -27.26359 -24.39118 -23.92567 -22.76156 -22.50889 -21.35692 -20.95012 -19.30167 -18.76657 -17.52956 -17.29473 -16.87082 -16.41616 -15.90233 -15.71863 -15.33087 -15.24720 -14.76678 -14.32494 -14.13520 -14.06847 -14.01787 -13.98289 -13.69348 -13.50443 -12.95648 -12.78056 -12.71152 -12.55920 -12.30498 -12.05732 -11.78741 -11.67862 -11.32221 -11.26643 -11.07341 -10.59315 -10.29043 -9.48804 -8.72890 -7.91718 -5.37819 -0.02152 1.33291 1.39671 1.45458 1.51303 1.54356 2.06485 2.18079 2.47991 3.24726 3.56252 3.74154 3.85669 3.91442 3.97608 4.10017 4.22951 4.44342 4.53238 4.54428 4.59541 4.71964 4.75327 4.79048 4.88354 4.93115 5.07034 5.12998 5.15728 5.17718 5.26988 5.33411 5.45830 5.50003 5.59297 5.70882 5.84245 6.33203 6.46322 7.02836 7.10319 7.81844 8.31269 9.13488 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.004986 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.340580 B = 5614.543127 C = 6615.217608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.024 3.976 3 C -0.229 4.229 4 C -0.125 4.125 5 C -0.107 4.107 6 C 0.593 3.407 7 O -0.566 6.566 8 N -0.697 5.697 9 C 0.129 3.871 10 H 0.057 0.943 11 C -0.107 4.107 12 C -0.121 4.121 13 C 0.135 3.865 14 N -0.609 5.609 15 C -0.266 4.266 16 H 0.071 0.929 17 C -0.051 4.051 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.294 1.294 21 H -0.291 1.291 22 H -0.259 1.259 23 C 0.178 3.822 24 O -0.169 6.169 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.188 0.812 29 H 0.155 0.845 30 H 0.414 0.586 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.022 0.978 36 H 0.058 0.942 37 H 0.247 0.753 38 H 0.044 0.956 39 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.052 4.026 -10.842 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.028 4.028 3 C -0.247 4.247 4 C -0.146 4.146 5 C -0.158 4.158 6 C 0.381 3.619 7 O -0.447 6.447 8 N -0.347 5.347 9 C 0.023 3.977 10 H 0.075 0.925 11 C -0.145 4.145 12 C -0.160 4.160 13 C 0.010 3.990 14 N -0.333 5.333 15 C -0.396 4.396 16 H 0.089 0.911 17 C -0.246 4.246 18 N -0.579 5.579 19 Si 0.791 3.209 20 H -0.222 1.222 21 H -0.217 1.217 22 H -0.184 1.184 23 C 0.051 3.949 24 O -0.065 6.065 25 H 0.124 0.876 26 H 0.105 0.895 27 H 0.134 0.866 28 H 0.205 0.795 29 H 0.173 0.827 30 H 0.250 0.750 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -16.332 4.054 -10.705 19.944 hybrid contribution 0.908 0.649 0.834 1.393 sum -15.424 4.703 -9.871 18.906 Atomic orbital electron populations 1.20682 0.80901 1.06020 1.05569 1.23822 0.96091 0.83321 0.99585 1.21928 0.90679 1.01528 1.10577 1.22219 1.00205 0.92674 0.99492 1.21716 0.82031 0.94701 1.17379 1.16943 0.86252 0.82393 0.76341 1.90880 1.24183 1.76869 1.52758 1.45825 1.10899 1.04831 1.73160 1.21661 0.87003 0.90467 0.98562 0.92476 1.21658 0.98938 0.92635 1.01259 1.21906 0.96937 1.00023 0.97128 1.21196 0.98649 0.86664 0.92494 1.44252 1.12027 1.11608 1.65445 1.19552 0.86300 1.24016 1.09728 0.91105 1.25814 1.00173 1.02476 0.96162 1.70179 1.29358 1.36749 1.21598 0.85331 0.80420 0.78626 0.76555 1.22150 1.21737 1.18352 1.20781 0.89203 0.93341 0.91574 1.83978 1.15269 1.36131 1.71150 0.87582 0.89477 0.86571 0.79490 0.82742 0.74970 0.90698 0.89513 0.88152 0.92799 0.96005 0.92362 0.94382 0.93778 0.98233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.41 71.24 0.74 0.07 16 2 C 0.02 0.48 7.31 24.97 0.18 0.66 16 3 C -0.23 -4.79 10.77 22.07 0.24 -4.55 16 4 C -0.13 -3.68 10.62 22.39 0.24 -3.44 16 5 C -0.11 -3.55 7.13 24.07 0.17 -3.38 16 6 C 0.59 24.09 7.75 86.44 0.67 24.76 16 7 O -0.57 -28.27 16.53 -4.33 -0.07 -28.35 16 8 N -0.70 -25.29 5.08 -446.14 -2.26 -27.55 16 9 C 0.13 5.29 2.60 45.07 0.12 5.40 16 10 H 0.06 2.68 7.58 -2.39 -0.02 2.66 16 11 C -0.11 -3.28 5.35 30.62 0.16 -3.12 16 12 C -0.12 -3.81 6.08 30.67 0.19 -3.62 16 13 C 0.13 5.54 6.51 86.37 0.56 6.10 16 14 N -0.61 -32.23 3.00 -699.09 -2.09 -34.33 16 15 C -0.27 -15.53 9.59 84.03 0.81 -14.72 16 16 H 0.07 3.98 7.89 -2.91 -0.02 3.96 16 17 C -0.05 -3.05 4.91 84.86 0.42 -2.63 16 18 N -0.93 -59.39 11.19 21.65 0.24 -59.15 16 19 Si 0.96 48.38 29.59 68.60 2.03 50.41 16 20 H -0.29 -15.07 7.11 99.48 0.71 -14.37 16 21 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 22 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.18 9.31 4.88 86.36 0.42 9.73 16 24 O -0.17 -4.56 10.40 -5.01 -0.05 -4.61 16 25 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.19 2.52 8.06 -2.91 -0.02 2.49 16 29 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 30 H 0.41 12.02 8.36 -92.71 -0.77 11.25 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 2.33 7.94 -2.39 -0.02 2.31 16 37 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.04 2.76 6.04 -2.39 -0.01 2.74 16 39 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 Total: -1.00 -79.32 326.53 2.98 -76.34 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.28 Total: 15.97 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 4.92 Total: 11.27 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -4.12 Total: -121.03 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.12 Total: -32.96 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -79.32 2.98 -76.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006677483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.236 kcal (2) G-P(sol) polarization free energy of solvation -79.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds