Wall clock time and date at job start Tue Mar 31 2020 00:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35132 * 125.61525 * 2 1 4 4 C 1.40363 * 107.11652 * 179.97438 * 3 2 1 5 5 C 1.36545 * 106.70804 * 359.97438 * 4 3 2 6 6 C 1.46663 * 125.98930 * 179.97438 * 5 4 3 7 7 O 1.21685 * 119.99708 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99677 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99533 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.52402 * 34.92114 * 9 8 6 11 11 C 1.53042 * 109.49455 * 154.99917 * 9 8 6 12 12 C 1.53044 * 109.53662 * 181.31498 * 11 9 8 13 13 C 1.53187 * 109.31450 * 298.63496 * 12 11 9 14 14 N 1.46930 * 108.77447 * 54.63251 * 13 12 11 15 15 C 1.36943 * 120.63047 * 126.36972 * 14 13 12 16 16 H 1.07995 * 120.00148 * 209.24829 * 15 14 13 17 17 C 1.38814 * 119.99794 * 29.24542 * 15 14 13 18 18 N 1.31619 * 120.00291 * 24.22367 * 17 15 14 19 19 Si 1.86800 * 119.99856 * 204.22959 * 17 15 14 20 20 H 1.48493 * 109.47179 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47343 * 59.99595 * 19 17 15 22 22 H 1.48505 * 109.46857 * 299.99918 * 19 17 15 23 23 C 1.46926 * 118.74284 * 306.64710 * 14 13 12 24 24 O 1.33935 * 125.61810 * 180.24249 * 2 1 3 25 25 H 1.09001 * 109.47155 * 90.00270 * 1 2 3 26 26 H 1.09000 * 109.46689 * 209.99802 * 1 2 3 27 27 H 1.08993 * 109.47185 * 330.00170 * 1 2 3 28 28 H 1.08000 * 126.44352 * 359.95916 * 3 2 1 29 29 H 1.07993 * 126.64870 * 179.97438 * 4 3 2 30 30 H 0.97000 * 120.00441 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.46049 * 61.29665 * 11 9 8 32 32 H 1.08992 * 109.45299 * 301.32650 * 11 9 8 33 33 H 1.09001 * 109.49819 * 178.68085 * 12 11 9 34 34 H 1.09006 * 109.49886 * 58.58547 * 12 11 9 35 35 H 1.09001 * 109.58924 * 294.84972 * 13 12 11 36 36 H 1.08998 * 109.70878 * 174.48709 * 13 12 11 37 37 H 0.96998 * 119.99374 * 5.77606 * 18 17 15 38 38 H 1.08991 * 109.58972 * 173.14482 * 23 14 13 39 39 H 1.09000 * 109.58442 * 293.56959 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6251 0.6532 0.0006 5 6 3.5824 -0.7116 0.0015 6 6 4.7416 -1.6101 0.0019 7 8 5.8680 -1.1499 0.0008 8 7 4.5590 -2.9455 0.0023 9 6 5.7169 -3.8429 0.0032 10 1 6.5206 -3.4001 0.5915 11 6 5.3193 -5.1890 0.6132 12 6 6.5365 -6.1162 0.6447 13 6 7.0253 -6.3595 -0.7866 14 7 7.2719 -5.0614 -1.4292 15 6 8.4815 -4.7894 -2.0108 16 1 8.8440 -3.7730 -2.0530 17 6 9.2416 -5.8202 -2.5461 18 7 8.6588 -6.9346 -2.9345 19 14 11.0917 -5.6258 -2.7152 20 1 11.6666 -6.8586 -3.3108 21 1 11.6900 -5.3973 -1.3754 22 1 11.3893 -4.4666 -3.5944 23 6 6.1983 -4.0584 -1.4305 24 8 2.2870 -1.0888 -0.0046 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.9613 2.1260 -0.0006 29 1 4.5113 1.2703 0.0004 30 1 3.6611 -3.3123 0.0027 31 1 4.5327 -5.6428 0.0103 32 1 4.9548 -5.0338 1.6286 33 1 6.2584 -7.0664 1.1007 34 1 7.3326 -5.6519 1.2269 35 1 6.2643 -6.9048 -1.3449 36 1 7.9486 -6.9384 -0.7663 37 1 7.6914 -7.0046 -2.9251 38 1 6.5766 -3.1186 -1.8326 39 1 5.3684 -4.4122 -2.0423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006677495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:51 Heat of formation + Delta-G solvation = -9.481610 kcal Electronic energy + Delta-G solvation = -21583.503956 eV Core-core repulsion = 18300.048550 eV Total energy + Delta-G solvation = -3283.455406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.84096 -39.56176 -37.50724 -34.62099 -33.48011 -32.56655 -32.13920 -30.42269 -29.10111 -27.07493 -25.09510 -23.15745 -22.21540 -21.77823 -21.32977 -20.17065 -19.50262 -18.10714 -17.37385 -16.61499 -15.85461 -15.60326 -14.75180 -14.48631 -14.10720 -13.99848 -13.59750 -13.55081 -13.42820 -13.25085 -13.19547 -13.13260 -12.73183 -12.35768 -12.19483 -12.00986 -11.22288 -10.77082 -10.69531 -10.37804 -10.26128 -10.18622 -10.06400 -9.97295 -9.85053 -9.33073 -9.00678 -8.63156 -8.29499 -6.86411 -6.03919 -3.22222 0.96339 2.17012 2.47035 3.23701 3.28891 3.54508 3.56935 3.75198 4.37818 4.62740 4.74022 4.74251 5.02054 5.06093 5.17585 5.29177 5.31900 5.37127 5.49839 5.56033 5.60491 5.66346 5.78119 5.92564 6.02469 6.12336 6.20156 6.35920 6.43432 6.51289 6.53476 6.65808 6.75328 6.86861 7.06228 7.18128 7.60832 8.06488 8.22491 8.61211 9.13496 9.87137 10.29628 11.24383 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029510 B = 0.003825 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.589911 B = 7318.670729 C = 7817.786302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.011 3.989 3 C -0.223 4.223 4 C -0.122 4.122 5 C -0.073 4.073 6 C 0.598 3.402 7 O -0.514 6.514 8 N -0.711 5.711 9 C 0.125 3.875 10 H 0.090 0.910 11 C -0.115 4.115 12 C -0.134 4.134 13 C 0.147 3.853 14 N -0.594 5.594 15 C -0.349 4.349 16 H 0.057 0.943 17 C -0.023 4.023 18 N -0.917 5.917 19 Si 1.066 2.934 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.143 3.857 24 O -0.163 6.163 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.160 0.840 30 H 0.400 0.600 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.018 0.982 36 H 0.081 0.919 37 H 0.268 0.732 38 H 0.060 0.940 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.182 10.856 8.131 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.041 4.041 3 C -0.242 4.242 4 C -0.143 4.143 5 C -0.125 4.125 6 C 0.383 3.617 7 O -0.392 6.392 8 N -0.360 5.360 9 C 0.020 3.980 10 H 0.108 0.892 11 C -0.153 4.153 12 C -0.174 4.174 13 C 0.021 3.979 14 N -0.318 5.318 15 C -0.478 4.478 16 H 0.075 0.925 17 C -0.225 4.225 18 N -0.557 5.557 19 Si 0.895 3.105 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.219 1.219 23 C 0.016 3.984 24 O -0.059 6.059 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.172 0.828 29 H 0.178 0.822 30 H 0.234 0.766 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -15.002 10.063 7.657 19.620 hybrid contribution -1.920 0.956 0.417 2.185 sum -16.922 11.019 8.074 21.748 Atomic orbital electron populations 1.20393 0.84650 1.04369 1.03924 1.22795 0.94258 0.84196 1.02837 1.21578 0.92394 0.99724 1.10502 1.21954 0.98610 0.93037 1.00670 1.22257 0.81746 0.94828 1.13626 1.16565 0.85935 0.81796 0.77391 1.90918 1.21867 1.75971 1.50397 1.46051 1.10826 1.05330 1.73824 1.21727 0.86918 0.88704 1.00652 0.89222 1.21678 0.99082 0.94948 0.99622 1.22061 0.96683 0.97868 1.00746 1.21011 0.99653 0.88403 0.88802 1.44047 1.11456 1.12234 1.64060 1.20014 0.95466 0.96135 1.36159 0.92532 1.25884 1.06235 0.94827 0.95525 1.70787 1.12364 1.29337 1.43191 0.83518 0.75351 0.75432 0.76182 1.21108 1.21968 1.21929 1.21104 0.91304 0.94170 0.91841 1.84000 1.16107 1.34963 1.70875 0.89627 0.90215 0.89039 0.82753 0.82212 0.76640 0.92111 0.92663 0.92382 0.91971 0.96405 0.90089 0.92104 0.92104 0.96580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.41 36.01 0.37 -0.04 16 2 C 0.01 0.11 7.31 -35.41 -0.26 -0.15 16 3 C -0.22 -2.24 10.77 -39.89 -0.43 -2.67 16 4 C -0.12 -1.56 10.62 -39.39 -0.42 -1.98 16 5 C -0.07 -1.04 7.13 -36.79 -0.26 -1.30 16 6 C 0.60 10.18 7.75 -12.86 -0.10 10.08 16 7 O -0.51 -10.64 16.53 5.20 0.09 -10.56 16 8 N -0.71 -11.15 5.08 -55.22 -0.28 -11.44 16 9 C 0.12 2.31 2.59 -68.03 -0.18 2.14 16 10 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 11 C -0.12 -1.87 5.36 -26.69 -0.14 -2.01 16 12 C -0.13 -2.47 6.08 -26.61 -0.16 -2.63 16 13 C 0.15 3.43 4.70 -3.71 -0.02 3.41 16 14 N -0.59 -15.33 2.84 -172.59 -0.49 -15.82 16 15 C -0.35 -10.09 9.48 -15.06 -0.14 -10.24 16 16 H 0.06 1.68 7.94 -52.49 -0.42 1.26 16 17 C -0.02 -0.66 4.69 -17.43 -0.08 -0.74 16 18 N -0.92 -27.73 12.45 55.49 0.69 -27.04 16 19 Si 1.07 25.86 29.98 -169.99 -5.10 20.76 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.14 3.22 6.06 -3.93 -0.02 3.20 16 24 O -0.16 -2.03 10.40 4.98 0.05 -1.98 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.40 5.17 8.36 -40.82 -0.34 4.83 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.42 7.85 -51.93 -0.41 0.01 16 36 H 0.08 2.12 6.38 -51.93 -0.33 1.78 16 37 H 0.27 8.15 6.71 -40.82 -0.27 7.87 16 38 H 0.06 1.48 7.93 -51.93 -0.41 1.07 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 325.57 15.07 4.91 4.91 Total: -1.00 -33.59 325.57 -7.57 -41.17 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.60 Total: 2.93 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.84 Total: -2.94 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.08 Total: -54.29 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.14 Total: -12.54 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.10 Total: 20.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.59 -7.57 -41.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006677495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.685 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds