Wall clock time and date at job start Tue Mar 31 2020 00:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35132 * 125.61525 * 2 1 4 4 C 1.40363 * 107.11652 * 179.97438 * 3 2 1 5 5 C 1.36545 * 106.70804 * 359.97438 * 4 3 2 6 6 C 1.46663 * 125.98930 * 179.97438 * 5 4 3 7 7 O 1.21685 * 119.99708 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99677 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99533 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.52402 * 34.92114 * 9 8 6 11 11 C 1.53042 * 109.49455 * 154.99917 * 9 8 6 12 12 C 1.53044 * 109.53662 * 181.31498 * 11 9 8 13 13 C 1.53187 * 109.31450 * 298.63496 * 12 11 9 14 14 N 1.46930 * 108.77447 * 54.63251 * 13 12 11 15 15 C 1.36943 * 120.63047 * 126.36972 * 14 13 12 16 16 H 1.07995 * 120.00148 * 209.24829 * 15 14 13 17 17 C 1.38814 * 119.99794 * 29.24542 * 15 14 13 18 18 N 1.31619 * 120.00291 * 24.22367 * 17 15 14 19 19 Si 1.86800 * 119.99856 * 204.22959 * 17 15 14 20 20 H 1.48493 * 109.47179 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47343 * 59.99595 * 19 17 15 22 22 H 1.48505 * 109.46857 * 299.99918 * 19 17 15 23 23 C 1.46926 * 118.74284 * 306.64710 * 14 13 12 24 24 O 1.33935 * 125.61810 * 180.24249 * 2 1 3 25 25 H 1.09001 * 109.47155 * 90.00270 * 1 2 3 26 26 H 1.09000 * 109.46689 * 209.99802 * 1 2 3 27 27 H 1.08993 * 109.47185 * 330.00170 * 1 2 3 28 28 H 1.08000 * 126.44352 * 359.95916 * 3 2 1 29 29 H 1.07993 * 126.64870 * 179.97438 * 4 3 2 30 30 H 0.97000 * 120.00441 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.46049 * 61.29665 * 11 9 8 32 32 H 1.08992 * 109.45299 * 301.32650 * 11 9 8 33 33 H 1.09001 * 109.49819 * 178.68085 * 12 11 9 34 34 H 1.09006 * 109.49886 * 58.58547 * 12 11 9 35 35 H 1.09001 * 109.58924 * 294.84972 * 13 12 11 36 36 H 1.08998 * 109.70878 * 174.48709 * 13 12 11 37 37 H 0.96998 * 119.99374 * 5.77606 * 18 17 15 38 38 H 1.08991 * 109.58972 * 173.14482 * 23 14 13 39 39 H 1.09000 * 109.58442 * 293.56959 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6251 0.6532 0.0006 5 6 3.5824 -0.7116 0.0015 6 6 4.7416 -1.6101 0.0019 7 8 5.8680 -1.1499 0.0008 8 7 4.5590 -2.9455 0.0023 9 6 5.7169 -3.8429 0.0032 10 1 6.5206 -3.4001 0.5915 11 6 5.3193 -5.1890 0.6132 12 6 6.5365 -6.1162 0.6447 13 6 7.0253 -6.3595 -0.7866 14 7 7.2719 -5.0614 -1.4292 15 6 8.4815 -4.7894 -2.0108 16 1 8.8440 -3.7730 -2.0530 17 6 9.2416 -5.8202 -2.5461 18 7 8.6588 -6.9346 -2.9345 19 14 11.0917 -5.6258 -2.7152 20 1 11.6666 -6.8586 -3.3108 21 1 11.6900 -5.3973 -1.3754 22 1 11.3893 -4.4666 -3.5944 23 6 6.1983 -4.0584 -1.4305 24 8 2.2870 -1.0888 -0.0046 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.9613 2.1260 -0.0006 29 1 4.5113 1.2703 0.0004 30 1 3.6611 -3.3123 0.0027 31 1 4.5327 -5.6428 0.0103 32 1 4.9548 -5.0338 1.6286 33 1 6.2584 -7.0664 1.1007 34 1 7.3326 -5.6519 1.2269 35 1 6.2643 -6.9048 -1.3449 36 1 7.9486 -6.9384 -0.7663 37 1 7.6914 -7.0046 -2.9251 38 1 6.5766 -3.1186 -1.8326 39 1 5.3684 -4.4122 -2.0423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006677495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:50 Heat of formation + Delta-G solvation = -32.306817 kcal Electronic energy + Delta-G solvation = -21584.493732 eV Core-core repulsion = 18300.048550 eV Total energy + Delta-G solvation = -3284.445181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.75254 -40.98926 -39.18522 -36.30228 -34.54127 -34.10189 -32.97233 -32.33338 -30.64985 -28.01877 -27.13516 -24.49479 -23.97728 -22.83183 -22.58173 -21.42016 -21.02749 -19.47814 -19.30403 -17.57671 -17.33624 -16.62372 -16.31489 -16.13876 -15.80176 -15.48160 -15.41009 -15.02197 -14.46176 -14.36000 -14.06022 -14.04125 -13.99030 -13.72094 -13.66302 -13.06073 -12.79524 -12.63263 -12.52499 -11.99989 -11.91204 -11.87783 -11.77787 -11.40857 -11.28344 -11.09451 -10.69026 -10.31166 -9.52299 -8.98155 -8.30307 -5.48410 -0.06538 1.30599 1.49263 1.55898 1.62917 1.83075 2.01020 2.06810 2.62426 3.16307 3.46228 3.59173 3.71800 3.87006 3.91912 3.95390 4.07703 4.28159 4.36590 4.51448 4.56283 4.63483 4.68617 4.70320 4.73090 4.84920 4.88401 4.97090 4.97832 5.09858 5.11700 5.21087 5.24335 5.43030 5.45644 5.78025 5.81042 6.34760 6.37548 6.93209 7.01426 7.71219 8.12734 8.93771 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029510 B = 0.003825 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.589911 B = 7318.670729 C = 7817.786302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.026 3.974 3 C -0.230 4.230 4 C -0.121 4.121 5 C -0.109 4.109 6 C 0.597 3.403 7 O -0.564 6.564 8 N -0.698 5.698 9 C 0.141 3.859 10 H 0.062 0.938 11 C -0.105 4.105 12 C -0.124 4.124 13 C 0.150 3.850 14 N -0.614 5.614 15 C -0.364 4.364 16 H 0.037 0.963 17 C -0.067 4.067 18 N -0.935 5.935 19 Si 1.115 2.885 20 H -0.284 1.284 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.146 3.854 24 O -0.169 6.169 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.187 0.813 29 H 0.158 0.842 30 H 0.416 0.584 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.014 0.986 36 H 0.047 0.953 37 H 0.256 0.744 38 H 0.027 0.973 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.793 11.533 9.383 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.026 4.026 3 C -0.248 4.248 4 C -0.142 4.142 5 C -0.160 4.160 6 C 0.385 3.615 7 O -0.445 6.445 8 N -0.348 5.348 9 C 0.035 3.965 10 H 0.080 0.920 11 C -0.142 4.142 12 C -0.164 4.164 13 C 0.025 3.975 14 N -0.339 5.339 15 C -0.494 4.494 16 H 0.055 0.945 17 C -0.264 4.264 18 N -0.576 5.576 19 Si 0.939 3.061 20 H -0.210 1.210 21 H -0.205 1.205 22 H -0.206 1.206 23 C 0.019 3.981 24 O -0.066 6.066 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.136 0.864 28 H 0.204 0.796 29 H 0.175 0.825 30 H 0.253 0.747 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -17.683 10.739 8.931 22.534 hybrid contribution -1.270 0.852 -0.011 1.529 sum -18.953 11.591 8.920 23.940 Atomic orbital electron populations 1.20685 0.81083 1.06153 1.05404 1.23796 0.96019 0.83353 0.99469 1.21945 0.90839 1.01499 1.10523 1.22234 1.00163 0.92646 0.99109 1.21664 0.81999 0.94622 1.17747 1.16906 0.86274 0.82178 0.76166 1.90881 1.24084 1.76825 1.52703 1.45809 1.10790 1.04796 1.73428 1.21272 0.87391 0.90561 0.97312 0.91961 1.21629 0.98357 0.92465 1.01798 1.21932 0.97322 1.00129 0.96967 1.20965 0.98078 0.86748 0.91705 1.44255 1.11404 1.13618 1.64638 1.20161 0.97132 0.95546 1.36511 0.94475 1.27232 1.09929 0.94288 0.94958 1.70899 1.11623 1.30101 1.45000 0.82870 0.70593 0.75724 0.76955 1.20963 1.20524 1.20581 1.21110 0.90446 0.91883 0.94650 1.83984 1.15325 1.36095 1.71182 0.88067 0.89286 0.86407 0.79587 0.82451 0.74655 0.90323 0.89027 0.88905 0.93037 0.96783 0.93487 0.93432 0.95394 0.96119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.41 71.24 0.74 0.24 16 2 C 0.03 0.43 7.31 24.97 0.18 0.62 16 3 C -0.23 -4.01 10.77 22.07 0.24 -3.78 16 4 C -0.12 -3.01 10.62 22.39 0.24 -2.77 16 5 C -0.11 -3.10 7.13 24.08 0.17 -2.93 16 6 C 0.60 20.86 7.75 86.44 0.67 21.53 16 7 O -0.56 -24.64 16.53 -4.30 -0.07 -24.71 16 8 N -0.70 -21.73 5.08 -446.85 -2.27 -24.00 16 9 C 0.14 5.24 2.59 44.93 0.12 5.36 16 10 H 0.06 2.70 7.58 -2.39 -0.02 2.68 16 11 C -0.10 -3.15 5.36 30.62 0.16 -2.99 16 12 C -0.12 -4.41 6.08 30.67 0.19 -4.23 16 13 C 0.15 7.12 4.70 86.36 0.41 7.52 16 14 N -0.61 -32.84 2.84 -699.94 -1.99 -34.83 16 15 C -0.36 -21.94 9.48 84.03 0.80 -21.15 16 16 H 0.04 2.33 7.94 -2.91 -0.02 2.31 16 17 C -0.07 -3.98 4.69 84.86 0.40 -3.58 16 18 N -0.94 -58.03 12.45 21.65 0.27 -57.76 16 19 Si 1.11 53.16 29.98 68.60 2.06 55.22 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 C 0.15 6.80 6.06 86.22 0.52 7.33 16 24 O -0.17 -3.91 10.40 -5.11 -0.05 -3.96 16 25 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 29 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.42 10.12 8.36 -92.71 -0.77 9.35 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.01 0.67 7.85 -2.39 -0.02 0.65 16 36 H 0.05 2.52 6.38 -2.39 -0.02 2.51 16 37 H 0.26 16.08 6.71 -92.71 -0.62 15.45 16 38 H 0.03 1.44 7.93 -2.39 -0.02 1.42 16 39 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.57 325.57 3.21 -74.36 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.43 Total: 14.51 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 4.83 Total: 1.18 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -3.99 Total: -116.59 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.12 Total: -28.67 kcal Atomic # 14 Polarization: 53.16 SS G_CDS: 2.06 Total: 55.22 kcal Total: -77.57 3.21 -74.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006677495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.055 kcal (2) G-P(sol) polarization free energy of solvation -77.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds