Wall clock time and date at job start Tue Mar 31 2020 00:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33659 * 125.80328 * 2 1 4 4 C 1.34210 * 110.90951 * 180.29088 * 3 2 1 5 5 C 1.34179 * 109.12695 * 359.72169 * 4 3 2 6 6 C 1.36418 * 125.80277 * 179.81567 * 2 1 3 7 7 C 1.47371 * 127.19101 * 359.97438 * 6 2 1 8 8 O 1.21617 * 120.00296 * 359.71015 * 7 6 2 9 9 N 1.34776 * 120.00238 * 179.71618 * 7 6 2 10 10 C 1.46500 * 120.00425 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.52297 * 325.08259 * 10 9 7 12 12 C 1.53039 * 109.50171 * 204.99503 * 10 9 7 13 13 C 1.53037 * 109.53818 * 178.68342 * 12 10 9 14 14 C 1.53189 * 109.31365 * 61.36696 * 13 12 10 15 15 N 1.46921 * 108.77762 * 305.36365 * 14 13 12 16 16 C 1.36934 * 120.63469 * 233.58705 * 15 14 13 17 17 H 1.07997 * 120.00732 * 152.05270 * 16 15 14 18 18 C 1.38819 * 119.99528 * 332.05397 * 16 15 14 19 19 N 1.31612 * 119.99824 * 335.33811 * 18 16 15 20 20 Si 1.86795 * 120.00002 * 155.34236 * 18 16 15 21 21 H 1.48495 * 109.47350 * 179.97438 * 20 18 16 22 22 H 1.48503 * 109.47440 * 59.99449 * 20 18 16 23 23 H 1.48504 * 109.47119 * 300.00193 * 20 18 16 24 24 C 1.46932 * 118.73683 * 53.86047 * 15 14 13 25 25 H 1.08996 * 109.46661 * 270.18985 * 1 2 3 26 26 H 1.09003 * 109.46890 * 30.19019 * 1 2 3 27 27 H 1.08998 * 109.46864 * 150.19043 * 1 2 3 28 28 H 1.08005 * 125.43858 * 179.72406 * 4 3 2 29 29 H 1.08002 * 127.02765 * 180.02562 * 5 4 3 30 30 H 0.96998 * 119.99690 * 359.97438 * 9 7 6 31 31 H 1.09001 * 109.45666 * 58.66357 * 12 10 9 32 32 H 1.08997 * 109.46018 * 298.70980 * 12 10 9 33 33 H 1.09003 * 109.49904 * 301.41173 * 13 12 10 34 34 H 1.09001 * 109.49610 * 181.32284 * 13 12 10 35 35 H 1.08998 * 109.58811 * 185.57726 * 14 13 12 36 36 H 1.09000 * 109.69934 * 65.22276 * 14 13 12 37 37 H 0.97002 * 120.00681 * 354.25216 * 19 18 16 38 38 H 1.08998 * 109.58755 * 65.92703 * 24 15 14 39 39 H 1.09004 * 109.58577 * 186.35259 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7391 -0.0064 5 6 3.6850 -0.5991 -0.0046 6 6 2.3051 -1.1064 0.0036 7 6 1.8740 -2.5157 0.0086 8 8 0.6890 -2.7892 0.0153 9 7 2.7930 -3.5015 0.0059 10 6 2.3646 -4.9024 0.0115 11 1 1.4557 -5.0030 0.6048 12 6 3.4688 -5.7720 0.6171 13 6 3.0091 -7.2312 0.6535 14 6 2.7425 -7.7142 -0.7756 15 7 1.7891 -6.7970 -1.4147 16 6 0.6415 -7.2733 -1.9902 17 1 -0.2349 -6.6448 -2.0477 18 6 0.6046 -8.5641 -2.4996 19 7 1.7180 -9.1532 -2.8808 20 14 -1.0255 -9.4648 -2.6443 21 1 -0.7952 -10.8167 -3.2139 22 1 -1.9357 -8.7012 -3.5353 23 1 -1.6417 -9.5922 -1.2992 24 6 2.0934 -5.3597 -1.4299 25 1 -0.3632 0.0034 1.0276 26 1 -0.3633 0.8883 -0.5168 27 1 -0.3633 -0.8917 -0.5109 28 1 4.4173 1.4285 -0.0120 29 1 4.5929 -1.1840 -0.0081 30 1 3.7382 -3.2834 0.0003 31 1 3.6828 -5.4332 1.6308 32 1 4.3699 -5.6901 0.0094 33 1 2.0942 -7.3099 1.2408 34 1 3.7866 -7.8464 1.1065 35 1 2.3211 -8.7191 -0.7490 36 1 3.6749 -7.7238 -1.3401 37 1 2.5522 -8.6580 -2.8844 38 1 2.9748 -5.1793 -2.0453 39 1 1.2436 -4.8105 -1.8352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006692096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:56 Heat of formation + Delta-G solvation = -10.182485 kcal Electronic energy + Delta-G solvation = -21766.235025 eV Core-core repulsion = 18482.749227 eV Total energy + Delta-G solvation = -3283.485798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.69751 -39.44091 -37.43476 -34.49500 -33.19873 -32.47548 -31.88775 -30.39041 -28.81160 -26.88276 -25.07814 -23.67310 -22.26244 -21.92210 -20.72490 -19.94978 -19.16459 -17.87249 -17.35770 -16.46929 -15.81012 -15.70490 -14.67342 -14.66567 -14.19990 -13.98200 -13.57466 -13.44903 -13.33211 -13.19402 -13.05781 -13.00052 -12.64829 -12.29251 -11.99363 -11.84124 -11.17128 -10.73132 -10.67469 -10.35149 -10.09256 -10.03317 -9.96316 -9.94263 -9.64701 -9.29736 -8.90467 -8.68534 -8.26617 -6.85256 -6.02927 -3.19721 1.30953 1.90336 2.65450 3.41141 3.50545 3.54889 3.57401 3.75588 4.36082 4.63758 4.72000 4.78081 5.13241 5.22139 5.33152 5.35941 5.39381 5.41508 5.53850 5.59694 5.62416 5.72230 5.96751 6.03212 6.07341 6.11812 6.15933 6.39986 6.45004 6.57937 6.63534 6.73068 6.86881 6.92674 7.08620 7.19888 7.76463 8.07385 8.46287 8.61930 9.14746 9.88596 10.31116 11.25368 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025936 B = 0.004165 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.332295 B = 6720.284022 C = 7403.485744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.075 3.925 3 O -0.179 6.179 4 C -0.043 4.043 5 C -0.188 4.188 6 C -0.242 4.242 7 C 0.585 3.415 8 O -0.537 6.537 9 N -0.715 5.715 10 C 0.127 3.873 11 H 0.088 0.912 12 C -0.115 4.115 13 C -0.134 4.134 14 C 0.147 3.853 15 N -0.595 5.595 16 C -0.347 4.347 17 H 0.057 0.943 18 C -0.024 4.024 19 N -0.918 5.918 20 Si 1.065 2.935 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.145 3.855 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.206 0.794 29 H 0.156 0.844 30 H 0.394 0.606 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.017 0.983 37 H 0.268 0.732 38 H 0.015 0.985 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 17.619 7.954 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.022 3.978 3 O -0.075 6.075 4 C -0.109 4.109 5 C -0.207 4.207 6 C -0.246 4.246 7 C 0.372 3.628 8 O -0.416 6.416 9 N -0.365 5.365 10 C 0.022 3.978 11 H 0.106 0.894 12 C -0.153 4.153 13 C -0.173 4.173 14 C 0.021 3.979 15 N -0.319 5.319 16 C -0.476 4.476 17 H 0.075 0.925 18 C -0.225 4.225 19 N -0.558 5.558 20 Si 0.895 3.105 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.220 1.220 24 C 0.017 3.983 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.130 0.870 28 H 0.223 0.777 29 H 0.173 0.827 30 H 0.227 0.773 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.152 16.218 7.525 18.354 hybrid contribution 1.645 1.585 0.393 2.318 sum 5.797 17.803 7.918 20.328 Atomic orbital electron populations 1.20626 0.83675 1.05202 1.04368 1.22852 0.94157 0.83048 0.97758 1.83758 1.17125 1.35090 1.71530 1.23808 0.83593 0.96349 1.07124 1.22881 0.96746 0.94553 1.06545 1.21284 0.93202 0.94207 1.15921 1.17181 0.85727 0.83570 0.76279 1.90785 1.16490 1.83894 1.50432 1.45911 1.09116 1.06579 1.74901 1.21811 0.98100 0.77604 1.00284 0.89399 1.21674 0.97649 0.96468 0.99533 1.22053 1.00427 0.94130 1.00719 1.21006 0.92290 0.95739 0.88872 1.44077 1.23245 1.00190 1.64368 1.20019 0.89217 1.01552 1.36821 0.92508 1.25854 1.04310 0.96571 0.95811 1.70785 1.00528 1.41117 1.43370 0.83527 0.74602 0.76247 0.76171 1.21122 1.21962 1.22000 1.21273 0.98340 0.86725 0.91937 0.89396 0.90516 0.87036 0.77697 0.82660 0.77271 0.92808 0.92281 0.92018 0.92495 0.90033 0.96484 0.92132 0.96697 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.88 36.01 0.36 -0.54 16 2 C 0.07 0.94 7.37 -34.96 -0.26 0.68 16 3 O -0.18 -1.99 10.52 7.65 0.08 -1.91 16 4 C -0.04 -0.38 12.03 29.30 0.35 -0.03 16 5 C -0.19 -1.92 10.60 -37.45 -0.40 -2.32 16 6 C -0.24 -3.30 6.31 -103.28 -0.65 -3.95 16 7 C 0.59 9.71 7.78 -12.54 -0.10 9.62 16 8 O -0.54 -10.74 14.51 5.26 0.08 -10.67 16 9 N -0.72 -10.96 5.08 -54.56 -0.28 -11.23 16 10 C 0.13 2.35 2.62 -67.58 -0.18 2.17 16 11 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 12 C -0.12 -1.87 5.35 -26.69 -0.14 -2.01 16 13 C -0.13 -2.48 6.08 -26.61 -0.16 -2.64 16 14 C 0.15 3.43 4.69 -3.71 -0.02 3.41 16 15 N -0.59 -15.34 2.84 -172.05 -0.49 -15.83 16 16 C -0.35 -10.03 9.49 -15.06 -0.14 -10.18 16 17 H 0.06 1.69 7.94 -52.49 -0.42 1.27 16 18 C -0.02 -0.69 4.69 -17.43 -0.08 -0.77 16 19 N -0.92 -27.74 12.41 55.49 0.69 -27.05 16 20 Si 1.06 25.83 29.98 -169.99 -5.10 20.73 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.14 3.24 6.12 -3.48 -0.02 3.22 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.11 1.45 6.49 -51.93 -0.34 1.11 16 28 H 0.21 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.16 1.19 7.74 -52.49 -0.41 0.79 16 30 H 0.39 4.78 7.77 -40.82 -0.32 4.47 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 2.14 6.31 -51.93 -0.33 1.81 16 36 H 0.02 0.40 7.85 -51.93 -0.41 0.00 16 37 H 0.27 8.13 6.69 -40.82 -0.27 7.86 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 1.46 7.93 -51.93 -0.41 1.05 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -33.86 321.05 -7.09 -40.95 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.47 Total: 3.49 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.44 Total: -3.33 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.08 Total: -54.11 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.16 Total: -12.58 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.10 Total: 20.73 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.86 -7.09 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006692096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.770 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds