Wall clock time and date at job start Tue Mar 31 2020 00:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33659 * 125.80328 * 2 1 4 4 C 1.34210 * 110.90951 * 180.29088 * 3 2 1 5 5 C 1.34179 * 109.12695 * 359.72169 * 4 3 2 6 6 C 1.36418 * 125.80277 * 179.81567 * 2 1 3 7 7 C 1.47371 * 127.19101 * 359.97438 * 6 2 1 8 8 O 1.21617 * 120.00296 * 359.71015 * 7 6 2 9 9 N 1.34776 * 120.00238 * 179.71618 * 7 6 2 10 10 C 1.46500 * 120.00425 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.52297 * 325.08259 * 10 9 7 12 12 C 1.53039 * 109.50171 * 204.99503 * 10 9 7 13 13 C 1.53037 * 109.53818 * 178.68342 * 12 10 9 14 14 C 1.53189 * 109.31365 * 61.36696 * 13 12 10 15 15 N 1.46921 * 108.77762 * 305.36365 * 14 13 12 16 16 C 1.36934 * 120.63469 * 233.58705 * 15 14 13 17 17 H 1.07997 * 120.00732 * 152.05270 * 16 15 14 18 18 C 1.38819 * 119.99528 * 332.05397 * 16 15 14 19 19 N 1.31612 * 119.99824 * 335.33811 * 18 16 15 20 20 Si 1.86795 * 120.00002 * 155.34236 * 18 16 15 21 21 H 1.48495 * 109.47350 * 179.97438 * 20 18 16 22 22 H 1.48503 * 109.47440 * 59.99449 * 20 18 16 23 23 H 1.48504 * 109.47119 * 300.00193 * 20 18 16 24 24 C 1.46932 * 118.73683 * 53.86047 * 15 14 13 25 25 H 1.08996 * 109.46661 * 270.18985 * 1 2 3 26 26 H 1.09003 * 109.46890 * 30.19019 * 1 2 3 27 27 H 1.08998 * 109.46864 * 150.19043 * 1 2 3 28 28 H 1.08005 * 125.43858 * 179.72406 * 4 3 2 29 29 H 1.08002 * 127.02765 * 180.02562 * 5 4 3 30 30 H 0.96998 * 119.99690 * 359.97438 * 9 7 6 31 31 H 1.09001 * 109.45666 * 58.66357 * 12 10 9 32 32 H 1.08997 * 109.46018 * 298.70980 * 12 10 9 33 33 H 1.09003 * 109.49904 * 301.41173 * 13 12 10 34 34 H 1.09001 * 109.49610 * 181.32284 * 13 12 10 35 35 H 1.08998 * 109.58811 * 185.57726 * 14 13 12 36 36 H 1.09000 * 109.69934 * 65.22276 * 14 13 12 37 37 H 0.97002 * 120.00681 * 354.25216 * 19 18 16 38 38 H 1.08998 * 109.58755 * 65.92703 * 24 15 14 39 39 H 1.09004 * 109.58577 * 186.35259 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7391 -0.0064 5 6 3.6850 -0.5991 -0.0046 6 6 2.3051 -1.1064 0.0036 7 6 1.8740 -2.5157 0.0086 8 8 0.6890 -2.7892 0.0153 9 7 2.7930 -3.5015 0.0059 10 6 2.3646 -4.9024 0.0115 11 1 1.4557 -5.0030 0.6048 12 6 3.4688 -5.7720 0.6171 13 6 3.0091 -7.2312 0.6535 14 6 2.7425 -7.7142 -0.7756 15 7 1.7891 -6.7970 -1.4147 16 6 0.6415 -7.2733 -1.9902 17 1 -0.2349 -6.6448 -2.0477 18 6 0.6046 -8.5641 -2.4996 19 7 1.7180 -9.1532 -2.8808 20 14 -1.0255 -9.4648 -2.6443 21 1 -0.7952 -10.8167 -3.2139 22 1 -1.9357 -8.7012 -3.5353 23 1 -1.6417 -9.5922 -1.2992 24 6 2.0934 -5.3597 -1.4299 25 1 -0.3632 0.0034 1.0276 26 1 -0.3633 0.8883 -0.5168 27 1 -0.3633 -0.8917 -0.5109 28 1 4.4173 1.4285 -0.0120 29 1 4.5929 -1.1840 -0.0081 30 1 3.7382 -3.2834 0.0003 31 1 3.6828 -5.4332 1.6308 32 1 4.3699 -5.6901 0.0094 33 1 2.0942 -7.3099 1.2408 34 1 3.7866 -7.8464 1.1065 35 1 2.3211 -8.7191 -0.7490 36 1 3.6749 -7.7238 -1.3401 37 1 2.5522 -8.6580 -2.8844 38 1 2.9748 -5.1793 -2.0453 39 1 1.2436 -4.8105 -1.8352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006692096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:55 Heat of formation + Delta-G solvation = -33.310753 kcal Electronic energy + Delta-G solvation = -21767.237942 eV Core-core repulsion = 18482.749227 eV Total energy + Delta-G solvation = -3284.488715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.54669 -40.84297 -39.09948 -36.18615 -34.44922 -33.84863 -32.77767 -32.31349 -30.40661 -27.81818 -27.11843 -24.92208 -23.98713 -23.26635 -21.85254 -21.39203 -20.52550 -19.43916 -18.85091 -17.34722 -17.16752 -16.86529 -16.27658 -16.15446 -15.76158 -15.51913 -15.47003 -14.96047 -14.62359 -14.31610 -14.23307 -13.97626 -13.86073 -13.76098 -13.63034 -13.01330 -12.70166 -12.62140 -12.46841 -11.95653 -11.88948 -11.84680 -11.72123 -11.26910 -11.04316 -10.85665 -10.62446 -10.16380 -9.54873 -8.96438 -8.29166 -5.45683 0.30380 1.12819 1.55950 1.63064 1.79976 1.83346 2.18482 2.30470 2.63610 3.17391 3.51882 3.60692 3.71162 3.84399 3.89963 3.99436 4.09808 4.31869 4.33002 4.40158 4.57706 4.62272 4.66479 4.71023 4.72653 4.86273 4.89027 4.99178 5.03678 5.12612 5.18890 5.23553 5.35511 5.39745 5.51221 5.79316 6.02423 6.35974 6.55246 7.01055 7.22057 7.73103 8.14373 8.94920 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025936 B = 0.004165 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.332295 B = 6720.284022 C = 7403.485744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.067 3.933 3 O -0.180 6.180 4 C -0.027 4.027 5 C -0.197 4.197 6 C -0.270 4.270 7 C 0.580 3.420 8 O -0.582 6.582 9 N -0.701 5.701 10 C 0.144 3.856 11 H 0.057 0.943 12 C -0.104 4.104 13 C -0.124 4.124 14 C 0.150 3.850 15 N -0.615 5.615 16 C -0.362 4.362 17 H 0.037 0.963 18 C -0.068 4.068 19 N -0.936 5.936 20 Si 1.114 2.886 21 H -0.284 1.284 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.148 3.852 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.253 0.747 29 H 0.182 0.818 30 H 0.414 0.586 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.014 0.986 37 H 0.256 0.744 38 H 0.021 0.979 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.710 19.301 9.220 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.013 3.987 3 O -0.076 6.076 4 C -0.092 4.092 5 C -0.216 4.216 6 C -0.275 4.275 7 C 0.369 3.631 8 O -0.464 6.464 9 N -0.353 5.353 10 C 0.037 3.963 11 H 0.075 0.925 12 C -0.142 4.142 13 C -0.164 4.164 14 C 0.025 3.975 15 N -0.340 5.340 16 C -0.492 4.492 17 H 0.055 0.945 18 C -0.264 4.264 19 N -0.577 5.577 20 Si 0.938 3.062 21 H -0.210 1.210 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.021 3.979 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.102 0.898 28 H 0.269 0.731 29 H 0.199 0.801 30 H 0.251 0.749 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.080 17.946 8.811 20.896 hybrid contribution 1.100 1.168 -0.038 1.605 sum 7.179 19.114 8.772 22.223 Atomic orbital electron populations 1.20594 0.83348 1.04973 1.04904 1.23043 0.94806 0.83358 0.97453 1.83788 1.18177 1.34407 1.71262 1.24741 0.83406 0.96793 1.04279 1.23177 0.95862 0.95390 1.07170 1.21222 0.95667 0.92512 1.18090 1.17702 0.85187 0.85018 0.75162 1.90764 1.18459 1.84780 1.52397 1.45659 1.10106 1.05016 1.74478 1.21324 0.98321 0.79800 0.96812 0.92462 1.21616 0.96867 0.93965 1.01751 1.21926 1.01179 0.96340 0.96934 1.20960 0.91014 0.93804 0.91751 1.44286 1.23039 1.01752 1.64916 1.20159 0.89953 1.01909 1.37164 0.94502 1.27183 1.06657 0.97357 0.95242 1.70897 1.00603 1.41049 1.45179 0.82883 0.71256 0.75160 0.76946 1.20973 1.20580 1.20612 1.21286 0.96956 0.84879 0.94790 0.88498 0.88081 0.89808 0.73098 0.80092 0.74947 0.89170 0.90316 0.93241 0.89058 0.93516 0.96808 0.93450 0.96150 0.95620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 9.88 71.24 0.70 -1.09 16 2 C 0.07 1.62 7.37 25.26 0.19 1.80 16 3 O -0.18 -3.55 10.52 4.46 0.05 -3.50 16 4 C -0.03 -0.38 12.03 66.89 0.80 0.43 16 5 C -0.20 -3.43 10.60 23.65 0.25 -3.17 16 6 C -0.27 -7.11 6.31 -18.99 -0.12 -7.23 16 7 C 0.58 19.43 7.78 86.65 0.67 20.10 16 8 O -0.58 -24.47 14.51 -4.09 -0.06 -24.53 16 9 N -0.70 -20.81 5.08 -444.77 -2.26 -23.07 16 10 C 0.14 5.28 2.62 45.22 0.12 5.40 16 11 H 0.06 2.49 7.58 -2.38 -0.02 2.47 16 12 C -0.10 -3.09 5.35 30.62 0.16 -2.93 16 13 C -0.12 -4.42 6.08 30.67 0.19 -4.24 16 14 C 0.15 7.10 4.69 86.36 0.40 7.50 16 15 N -0.61 -32.77 2.84 -698.25 -1.99 -34.75 16 16 C -0.36 -21.79 9.49 84.04 0.80 -21.00 16 17 H 0.04 2.31 7.94 -2.91 -0.02 2.29 16 18 C -0.07 -3.99 4.69 84.86 0.40 -3.60 16 19 N -0.94 -57.96 12.41 21.65 0.27 -57.69 16 20 Si 1.11 53.08 29.98 68.60 2.06 55.14 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 C 0.15 6.83 6.12 86.51 0.53 7.36 16 25 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.08 2.33 6.49 -2.39 -0.02 2.31 16 28 H 0.25 0.85 8.06 -2.91 -0.02 0.83 16 29 H 0.18 2.04 7.74 -2.91 -0.02 2.02 16 30 H 0.41 8.96 7.77 -92.71 -0.72 8.24 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.05 2.51 6.31 -2.39 -0.02 2.50 16 36 H 0.01 0.66 7.85 -2.39 -0.02 0.64 16 37 H 0.26 16.03 6.69 -92.71 -0.62 15.41 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 Total: -1.00 -78.28 321.05 3.66 -74.63 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.49 Total: 14.44 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.10 Total: -0.66 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -3.97 Total: -115.51 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.01 Total: -28.03 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 2.06 Total: 55.14 kcal Total: -78.28 3.66 -74.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006692096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.316 kcal (2) G-P(sol) polarization free energy of solvation -78.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds