Wall clock time and date at job start Tue Mar 31 2020 01:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40362 * 126.64551 * 2 1 4 4 C 1.35129 * 107.11938 * 180.02562 * 3 2 1 5 5 O 1.33937 * 108.76736 * 0.02562 * 4 3 2 6 6 C 1.34916 * 109.37705 * 359.97438 * 5 4 3 7 7 C 1.46662 * 125.98238 * 179.97438 * 6 5 4 8 8 O 1.21693 * 120.00080 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00036 * 0.02562 * 7 6 5 10 10 C 1.46505 * 120.00253 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.49428 * 324.93947 * 10 9 7 12 12 C 1.53040 * 109.49861 * 204.84260 * 10 9 7 13 13 C 1.53046 * 109.53281 * 178.68249 * 12 10 9 14 14 C 1.53186 * 109.31306 * 61.36753 * 13 12 10 15 15 N 1.46929 * 108.77644 * 305.36033 * 14 13 12 16 16 C 1.36936 * 120.63193 * 233.63317 * 15 14 13 17 17 H 1.07998 * 120.00280 * 152.60789 * 16 15 14 18 18 C 1.38813 * 119.99693 * 332.60324 * 16 15 14 19 19 N 1.31626 * 119.99369 * 159.37308 * 18 16 15 20 20 Si 1.86798 * 120.00314 * 339.37359 * 18 16 15 21 21 H 1.48503 * 109.46981 * 92.93094 * 20 18 16 22 22 H 1.48504 * 109.47218 * 212.92680 * 20 18 16 23 23 H 1.48500 * 109.47286 * 332.92780 * 20 18 16 24 24 C 1.46926 * 118.73701 * 53.61178 * 15 14 13 25 25 H 1.09000 * 109.47118 * 89.97509 * 1 2 3 26 26 H 1.09001 * 109.46541 * 209.97606 * 1 2 3 27 27 H 1.08997 * 109.47212 * 329.97066 * 1 2 3 28 28 H 1.08007 * 126.44293 * 0.03630 * 3 2 1 29 29 H 1.08001 * 125.62304 * 180.02562 * 4 3 2 30 30 H 0.97006 * 120.00503 * 0.02562 * 9 7 6 31 31 H 1.08998 * 109.45798 * 298.70350 * 12 10 9 32 32 H 1.08995 * 109.45779 * 58.66517 * 12 10 9 33 33 H 1.09000 * 109.49890 * 301.41158 * 13 12 10 34 34 H 1.09006 * 109.48960 * 181.31732 * 13 12 10 35 35 H 1.08995 * 109.58615 * 185.57309 * 14 13 12 36 36 H 1.09002 * 109.58783 * 65.15090 * 14 13 12 37 37 H 0.97005 * 119.99396 * 180.02562 * 19 18 16 38 38 H 1.08999 * 109.58782 * 186.60539 * 24 15 14 39 39 H 1.08995 * 109.58976 * 66.17754 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0006 5 8 3.6006 -0.6647 -0.0015 6 6 2.3220 -1.0955 -0.0010 7 6 1.8843 -2.4952 -0.0022 8 8 0.6969 -2.7615 -0.0020 9 7 2.7972 -3.4867 -0.0035 10 6 2.3600 -4.8850 -0.0053 11 1 1.4487 -4.9820 0.5849 12 6 3.4571 -5.7640 0.5996 13 6 2.9881 -7.2206 0.6283 14 6 2.7226 -7.6956 -0.8036 15 7 1.7767 -6.7696 -1.4413 16 6 0.6273 -7.2361 -2.0214 17 1 -0.2420 -6.5986 -2.0865 18 6 0.5795 -8.5285 -2.5257 19 7 -0.5814 -9.1220 -2.7058 20 14 2.1626 -9.4253 -2.9486 21 1 2.6030 -10.2298 -1.7807 22 1 1.9284 -10.3232 -4.1081 23 1 3.2151 -8.4360 -3.2934 24 6 2.0873 -5.3336 -1.4445 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3632 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 2.0306 2.1596 0.0006 29 1 4.5046 1.2917 -0.0003 30 1 3.7438 -3.2746 -0.0033 31 1 4.3604 -5.6851 -0.0053 32 1 3.6703 -5.4311 1.6154 33 1 2.0711 -7.2961 1.2127 34 1 3.7606 -7.8425 1.0807 35 1 2.2949 -8.6979 -0.7827 36 1 3.6574 -7.7067 -1.3642 37 1 -0.6148 -10.0253 -3.0579 38 1 1.2404 -4.7774 -1.8463 39 1 2.9702 -5.1520 -2.0573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006762482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:43 Heat of formation + Delta-G solvation = 0.180895 kcal Electronic energy + Delta-G solvation = -21845.867411 eV Core-core repulsion = 18562.831003 eV Total energy + Delta-G solvation = -3283.036408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.82623 -39.57179 -37.61927 -34.77617 -33.97750 -32.51912 -30.83502 -30.74346 -29.27706 -27.45052 -25.30726 -23.65451 -22.19968 -21.98259 -21.11456 -20.06795 -19.52462 -18.07698 -16.81179 -16.49000 -16.12693 -15.79331 -15.27300 -14.68862 -14.30917 -13.93743 -13.72259 -13.57336 -13.22629 -13.17254 -13.10523 -12.85646 -12.64743 -12.34667 -12.08508 -11.87394 -11.52852 -11.15653 -10.92426 -10.76091 -10.16834 -10.08428 -9.89291 -9.85667 -9.71672 -9.45441 -9.09179 -8.72758 -8.49527 -6.96077 -5.91162 -3.27839 0.98800 2.19074 2.60274 3.23558 3.29918 3.33082 3.49808 3.52728 4.52761 4.55434 4.63345 4.81128 5.02829 5.15938 5.27607 5.31970 5.38622 5.42837 5.51935 5.63831 5.68722 5.80606 5.89616 5.93457 6.02429 6.04905 6.18800 6.29894 6.31405 6.41367 6.49992 6.59133 6.65034 6.73094 6.76583 6.93938 7.60635 7.98648 8.23331 8.37633 8.97215 9.74792 10.10386 11.24792 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029202 B = 0.004265 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.623273 B = 6563.605250 C = 7046.222649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.091 4.091 3 C -0.225 4.225 4 C -0.011 4.011 5 O -0.165 6.165 6 C -0.079 4.079 7 C 0.598 3.402 8 O -0.509 6.509 9 N -0.712 5.712 10 C 0.124 3.876 11 H 0.094 0.906 12 C -0.116 4.116 13 C -0.131 4.131 14 C 0.121 3.879 15 N -0.601 5.601 16 C -0.259 4.259 17 H 0.087 0.913 18 C 0.024 3.976 19 N -0.907 5.907 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.271 1.271 24 C 0.144 3.856 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.154 0.846 29 H 0.208 0.792 30 H 0.400 0.600 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.968 18.248 7.776 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.244 4.244 4 C -0.081 4.081 5 O -0.060 6.060 6 C -0.131 4.131 7 C 0.384 3.616 8 O -0.386 6.386 9 N -0.362 5.362 10 C 0.019 3.981 11 H 0.112 0.888 12 C -0.154 4.154 13 C -0.171 4.171 14 C -0.004 4.004 15 N -0.325 5.325 16 C -0.387 4.387 17 H 0.105 0.895 18 C -0.175 4.175 19 N -0.550 5.550 20 Si 0.713 3.287 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.196 1.196 24 C 0.017 3.983 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.172 0.828 29 H 0.225 0.775 30 H 0.234 0.766 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 10.229 17.661 7.692 21.811 hybrid contribution 1.411 -0.159 -0.320 1.456 sum 11.641 17.503 7.372 22.275 Atomic orbital electron populations 1.20438 0.88143 1.03576 1.03082 1.20661 0.97771 0.90960 0.99987 1.21740 0.92502 1.00115 1.10041 1.24305 0.99873 0.80731 1.03166 1.84057 1.28540 1.22614 1.70812 1.22077 0.81292 0.95118 1.14635 1.16538 0.86029 0.81668 0.77386 1.90900 1.15559 1.82025 1.50147 1.46023 1.09412 1.06645 1.74159 1.21793 0.98439 0.77430 1.00408 0.88834 1.21683 0.97692 0.96085 0.99982 1.22000 1.01007 0.94358 0.99758 1.21410 0.93063 0.95052 0.90888 1.44291 1.23212 1.00609 1.64370 1.18959 0.88688 0.98730 1.32352 0.89520 1.25263 0.96287 0.97032 0.98908 1.69849 1.23777 1.13436 1.47985 0.86951 0.85220 0.79247 0.77241 1.21597 1.23159 1.19647 1.21222 0.99103 0.85825 0.92184 0.90679 0.89285 0.91661 0.82808 0.77525 0.76649 0.92010 0.92332 0.91313 0.92160 0.90697 0.95619 0.92777 0.91310 0.95897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.82 36.01 0.35 -0.78 16 2 C -0.09 -1.13 6.20 -104.44 -0.65 -1.78 16 3 C -0.22 -2.12 10.83 -39.89 -0.43 -2.55 16 4 C -0.01 -0.09 12.08 29.63 0.36 0.27 16 5 O -0.16 -1.87 10.40 4.97 0.05 -1.82 16 6 C -0.08 -1.08 7.13 -36.80 -0.26 -1.34 16 7 C 0.60 9.58 7.75 -12.86 -0.10 9.48 16 8 O -0.51 -9.84 14.40 5.19 0.07 -9.76 16 9 N -0.71 -10.36 5.08 -55.00 -0.28 -10.64 16 10 C 0.12 2.14 2.60 -67.81 -0.18 1.96 16 11 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 12 C -0.12 -1.73 5.35 -26.69 -0.14 -1.87 16 13 C -0.13 -2.25 6.08 -26.61 -0.16 -2.42 16 14 C 0.12 2.63 4.20 -3.71 -0.02 2.61 16 15 N -0.60 -14.62 2.77 -172.32 -0.48 -15.10 16 16 C -0.26 -7.46 10.04 -15.06 -0.15 -7.62 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 18 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 19 N -0.91 -28.31 13.97 55.49 0.78 -27.53 16 20 Si 0.88 22.54 24.35 -169.99 -4.14 18.40 16 21 H -0.29 -7.03 6.62 56.52 0.37 -6.66 16 22 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 23 H -0.27 -6.80 6.64 56.52 0.38 -6.42 16 24 C 0.14 3.00 6.09 -3.71 -0.02 2.97 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.09 1.23 6.45 -51.93 -0.33 0.90 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.15 1.04 8.06 -52.48 -0.42 0.61 16 29 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.40 4.71 8.36 -40.82 -0.34 4.37 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.78 4.49 -51.93 -0.23 1.55 16 36 H 0.03 0.55 7.08 -51.93 -0.37 0.18 16 37 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 38 H 0.07 1.56 7.93 -51.93 -0.41 1.15 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 316.08 15.07 4.76 4.76 Total: -1.00 -33.52 316.08 -6.22 -39.74 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.50 Total: 2.38 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.49 Total: -0.45 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.02 Total: -53.27 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.13 Total: -11.58 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.14 Total: 18.40 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.52 -6.22 -39.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006762482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.925 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds