Wall clock time and date at job start Tue Mar 31 2020 01:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40362 * 126.64551 * 2 1 4 4 C 1.35129 * 107.11938 * 180.02562 * 3 2 1 5 5 O 1.33937 * 108.76736 * 0.02562 * 4 3 2 6 6 C 1.34916 * 109.37705 * 359.97438 * 5 4 3 7 7 C 1.46662 * 125.98238 * 179.97438 * 6 5 4 8 8 O 1.21693 * 120.00080 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00036 * 0.02562 * 7 6 5 10 10 C 1.46505 * 120.00253 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.49428 * 324.93947 * 10 9 7 12 12 C 1.53040 * 109.49861 * 204.84260 * 10 9 7 13 13 C 1.53046 * 109.53281 * 178.68249 * 12 10 9 14 14 C 1.53186 * 109.31306 * 61.36753 * 13 12 10 15 15 N 1.46929 * 108.77644 * 305.36033 * 14 13 12 16 16 C 1.36936 * 120.63193 * 233.63317 * 15 14 13 17 17 H 1.07998 * 120.00280 * 152.60789 * 16 15 14 18 18 C 1.38813 * 119.99693 * 332.60324 * 16 15 14 19 19 N 1.31626 * 119.99369 * 159.37308 * 18 16 15 20 20 Si 1.86798 * 120.00314 * 339.37359 * 18 16 15 21 21 H 1.48503 * 109.46981 * 92.93094 * 20 18 16 22 22 H 1.48504 * 109.47218 * 212.92680 * 20 18 16 23 23 H 1.48500 * 109.47286 * 332.92780 * 20 18 16 24 24 C 1.46926 * 118.73701 * 53.61178 * 15 14 13 25 25 H 1.09000 * 109.47118 * 89.97509 * 1 2 3 26 26 H 1.09001 * 109.46541 * 209.97606 * 1 2 3 27 27 H 1.08997 * 109.47212 * 329.97066 * 1 2 3 28 28 H 1.08007 * 126.44293 * 0.03630 * 3 2 1 29 29 H 1.08001 * 125.62304 * 180.02562 * 4 3 2 30 30 H 0.97006 * 120.00503 * 0.02562 * 9 7 6 31 31 H 1.08998 * 109.45798 * 298.70350 * 12 10 9 32 32 H 1.08995 * 109.45779 * 58.66517 * 12 10 9 33 33 H 1.09000 * 109.49890 * 301.41158 * 13 12 10 34 34 H 1.09006 * 109.48960 * 181.31732 * 13 12 10 35 35 H 1.08995 * 109.58615 * 185.57309 * 14 13 12 36 36 H 1.09002 * 109.58783 * 65.15090 * 14 13 12 37 37 H 0.97005 * 119.99396 * 180.02562 * 19 18 16 38 38 H 1.08999 * 109.58782 * 186.60539 * 24 15 14 39 39 H 1.08995 * 109.58976 * 66.17754 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0006 5 8 3.6006 -0.6647 -0.0015 6 6 2.3220 -1.0955 -0.0010 7 6 1.8843 -2.4952 -0.0022 8 8 0.6969 -2.7615 -0.0020 9 7 2.7972 -3.4867 -0.0035 10 6 2.3600 -4.8850 -0.0053 11 1 1.4487 -4.9820 0.5849 12 6 3.4571 -5.7640 0.5996 13 6 2.9881 -7.2206 0.6283 14 6 2.7226 -7.6956 -0.8036 15 7 1.7767 -6.7696 -1.4413 16 6 0.6273 -7.2361 -2.0214 17 1 -0.2420 -6.5986 -2.0865 18 6 0.5795 -8.5285 -2.5257 19 7 -0.5814 -9.1220 -2.7058 20 14 2.1626 -9.4253 -2.9486 21 1 2.6030 -10.2298 -1.7807 22 1 1.9284 -10.3232 -4.1081 23 1 3.2151 -8.4360 -3.2934 24 6 2.0873 -5.3336 -1.4445 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3632 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 2.0306 2.1596 0.0006 29 1 4.5046 1.2917 -0.0003 30 1 3.7438 -3.2746 -0.0033 31 1 4.3604 -5.6851 -0.0053 32 1 3.6703 -5.4311 1.6154 33 1 2.0711 -7.2961 1.2127 34 1 3.7606 -7.8425 1.0807 35 1 2.2949 -8.6979 -0.7827 36 1 3.6574 -7.7067 -1.3642 37 1 -0.6148 -10.0253 -3.0579 38 1 1.2404 -4.7774 -1.8463 39 1 2.9702 -5.1520 -2.0573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006762482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:41 Heat of formation + Delta-G solvation = -24.599260 kcal Electronic energy + Delta-G solvation = -21846.941960 eV Core-core repulsion = 18562.831003 eV Total energy + Delta-G solvation = -3284.110957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.66169 -40.89424 -39.16715 -36.19546 -35.03980 -34.28634 -32.71938 -31.77930 -30.56170 -28.49085 -27.23182 -24.90940 -23.76287 -23.30883 -22.11907 -21.45543 -20.75679 -19.12038 -18.79875 -17.45668 -17.39715 -17.09415 -16.81936 -16.19138 -15.63267 -15.47261 -15.31695 -14.86928 -14.65189 -14.50952 -14.12449 -14.03540 -13.88964 -13.73949 -13.51749 -13.32899 -12.87196 -12.75706 -12.60512 -12.45871 -11.86841 -11.70173 -11.52097 -11.38771 -11.21488 -10.80453 -10.66498 -10.31166 -9.58130 -8.94980 -8.18708 -5.53012 0.03608 1.29535 1.41552 1.42766 1.51967 1.66774 2.08342 2.20039 2.40492 3.04068 3.33262 3.71923 3.80405 3.84402 3.96372 4.00282 4.08204 4.29741 4.39191 4.54160 4.62581 4.62900 4.67212 4.73086 4.77547 4.90288 4.96869 5.00210 5.04252 5.10277 5.17091 5.21906 5.31579 5.44088 5.50860 5.82473 5.88316 6.09176 6.47700 6.87474 7.06999 7.57891 7.95826 9.01691 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029202 B = 0.004265 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.623273 B = 6563.605250 C = 7046.222649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.097 4.097 3 C -0.236 4.236 4 C 0.017 3.983 5 O -0.168 6.168 6 C -0.116 4.116 7 C 0.594 3.406 8 O -0.558 6.558 9 N -0.699 5.699 10 C 0.138 3.862 11 H 0.060 0.940 12 C -0.106 4.106 13 C -0.126 4.126 14 C 0.112 3.888 15 N -0.617 5.617 16 C -0.258 4.258 17 H 0.036 0.964 18 C -0.035 4.035 19 N -0.959 5.959 20 Si 0.958 3.042 21 H -0.265 1.265 22 H -0.310 1.310 23 H -0.258 1.258 24 C 0.145 3.855 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.183 0.817 29 H 0.260 0.740 30 H 0.417 0.583 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.031 0.969 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.495 20.062 8.876 26.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.100 4.100 3 C -0.255 4.255 4 C -0.052 4.052 5 O -0.064 6.064 6 C -0.168 4.168 7 C 0.382 3.618 8 O -0.439 6.439 9 N -0.349 5.349 10 C 0.032 3.968 11 H 0.078 0.922 12 C -0.144 4.144 13 C -0.165 4.165 14 C -0.012 4.012 15 N -0.342 5.342 16 C -0.388 4.388 17 H 0.054 0.946 18 C -0.230 4.230 19 N -0.605 5.605 20 Si 0.786 3.214 21 H -0.191 1.191 22 H -0.239 1.239 23 H -0.182 1.182 24 C 0.018 3.982 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.201 0.799 29 H 0.276 0.724 30 H 0.254 0.746 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.830 19.509 8.826 26.047 hybrid contribution -0.056 -0.516 -0.651 0.832 sum 14.774 18.993 8.175 25.414 Atomic orbital electron populations 1.20420 0.88568 1.03479 1.02831 1.21008 0.98023 0.92125 0.98823 1.22091 0.92338 1.00565 1.10478 1.25384 1.01341 0.79579 0.98888 1.84044 1.27048 1.24284 1.70979 1.21534 0.82731 0.93907 1.18579 1.16915 0.85538 0.83021 0.76324 1.90877 1.17565 1.83106 1.52313 1.45777 1.10180 1.05262 1.73717 1.21375 0.98730 0.79464 0.97275 0.92215 1.21652 0.96980 0.93650 1.02097 1.21926 1.01696 0.96517 0.96358 1.21572 0.92426 0.93421 0.93760 1.44356 1.22532 1.02392 1.64873 1.18787 0.89132 0.98291 1.32565 0.94583 1.25986 0.99947 0.98040 0.99018 1.70002 1.26520 1.14126 1.49832 0.85742 0.80557 0.78012 0.77105 1.19121 1.23890 1.18226 1.21267 0.98158 0.83760 0.94971 0.91021 0.92159 0.88910 0.79931 0.72445 0.74558 0.89442 0.89082 0.93096 0.88171 0.93034 0.93776 0.92766 0.95023 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.33 9.82 71.24 0.70 -1.63 16 2 C -0.10 -2.32 6.20 -19.74 -0.12 -2.44 16 3 C -0.24 -3.65 10.83 22.07 0.24 -3.41 16 4 C 0.02 0.21 12.08 67.10 0.81 1.02 16 5 O -0.17 -3.33 10.40 -5.13 -0.05 -3.39 16 6 C -0.12 -3.10 7.13 24.07 0.17 -2.93 16 7 C 0.59 19.62 7.75 86.44 0.67 20.29 16 8 O -0.56 -23.31 14.40 -4.33 -0.06 -23.37 16 9 N -0.70 -19.86 5.08 -446.13 -2.27 -22.13 16 10 C 0.14 4.71 2.60 45.07 0.12 4.83 16 11 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 12 C -0.11 -2.78 5.35 30.62 0.16 -2.62 16 13 C -0.13 -3.95 6.08 30.67 0.19 -3.76 16 14 C 0.11 4.66 4.20 86.36 0.36 5.03 16 15 N -0.62 -30.57 2.77 -699.11 -1.94 -32.50 16 16 C -0.26 -15.72 10.04 84.03 0.84 -14.87 16 17 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 18 C -0.04 -2.14 5.23 84.86 0.44 -1.70 16 19 N -0.96 -62.64 13.97 21.65 0.30 -62.34 16 20 Si 0.96 47.13 24.35 68.60 1.67 48.80 16 21 H -0.27 -11.98 6.62 99.48 0.66 -11.32 16 22 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 23 H -0.26 -12.00 6.64 99.48 0.66 -11.34 16 24 C 0.14 6.18 6.09 86.36 0.53 6.70 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.81 6.45 -2.39 -0.02 1.79 16 27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 29 H 0.26 0.27 8.06 -2.91 -0.02 0.25 16 30 H 0.42 8.84 8.36 -92.70 -0.77 8.06 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.05 2.37 4.49 -2.39 -0.01 2.36 16 36 H 0.04 1.69 7.08 -2.39 -0.02 1.68 16 37 H 0.26 16.17 8.31 -92.70 -0.77 15.39 16 38 H 0.03 1.54 7.93 -2.39 -0.02 1.52 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -80.29 316.08 2.96 -77.33 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.19 Total: 13.08 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.11 Total: 4.51 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -3.90 Total: -116.97 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.12 Total: -26.76 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.67 Total: 48.80 kcal Total: -80.29 2.96 -77.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006762482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.734 kcal (2) G-P(sol) polarization free energy of solvation -80.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds