Wall clock time and date at job start Tue Mar 31 2020 00:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34179 * 125.43791 * 2 1 4 4 C 1.47015 * 105.95605 * 180.14685 * 3 2 1 5 5 C 1.47380 * 127.19466 * 179.83547 * 4 3 2 6 6 O 1.21607 * 120.00229 * 359.71057 * 5 4 3 7 7 N 1.34782 * 119.99990 * 179.70692 * 5 4 3 8 8 C 1.46497 * 120.00036 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.52741 * 324.92760 * 8 7 5 10 10 C 1.53033 * 109.50005 * 204.83988 * 8 7 5 11 11 C 1.53044 * 109.53734 * 178.68562 * 10 8 7 12 12 C 1.52761 * 109.38356 * 61.24440 * 11 10 8 13 13 N 1.46932 * 109.00441 * 305.58599 * 12 11 10 14 14 C 1.36936 * 120.62484 * 233.58057 * 13 12 11 15 15 H 1.08003 * 119.99356 * 151.81679 * 14 13 12 16 16 C 1.38803 * 120.00756 * 331.82023 * 14 13 12 17 17 N 1.31618 * 119.99736 * 335.49342 * 16 14 13 18 18 Si 1.86799 * 120.00355 * 155.49660 * 16 14 13 19 19 H 1.48498 * 109.47329 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47105 * 59.99889 * 18 16 14 21 21 H 1.48503 * 109.46825 * 299.99639 * 18 16 14 22 22 C 1.46922 * 118.73835 * 53.31141 * 13 12 11 23 23 C 1.36416 * 105.61638 * 359.57536 * 4 3 2 24 24 O 1.33660 * 108.39428 * 0.25585 * 23 4 3 25 25 H 1.08997 * 109.47358 * 180.35599 * 1 2 3 26 26 H 1.08997 * 109.47367 * 300.35883 * 1 2 3 27 27 H 1.09010 * 109.47416 * 60.35586 * 1 2 3 28 28 H 1.08004 * 127.02554 * 359.97438 * 3 2 1 29 29 H 0.96995 * 120.00234 * 0.02562 * 7 5 4 30 30 H 1.09003 * 109.46353 * 298.70781 * 10 8 7 31 31 H 1.08996 * 109.45829 * 58.68278 * 10 8 7 32 32 H 1.09006 * 109.49810 * 181.31953 * 11 10 8 33 33 H 1.08997 * 109.49642 * 301.41273 * 11 10 8 34 34 H 1.09003 * 109.50983 * 185.70669 * 12 11 10 35 35 H 1.08993 * 109.43265 * 65.42107 * 12 11 10 36 36 H 0.97002 * 120.00481 * 354.24867 * 17 16 14 37 37 H 1.08999 * 109.58741 * 66.42770 * 22 13 12 38 38 H 1.08998 * 109.58390 * 186.85153 * 22 13 12 39 39 H 1.08002 * 125.80602 * 180.26558 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6709 0.6029 -0.0036 5 6 4.9024 1.4126 -0.0084 6 8 4.8319 2.6266 -0.0150 7 7 6.1067 0.8075 -0.0053 8 6 7.3308 1.6123 -0.0106 9 1 7.1731 2.5115 -0.6062 10 6 8.4766 0.7955 -0.6123 11 6 9.7480 1.6466 -0.6484 12 6 10.1328 2.0438 0.7756 13 7 8.9848 2.7001 1.4161 14 6 9.1183 3.9371 1.9883 15 1 8.2684 4.6013 2.0429 16 6 10.3458 4.3372 2.4980 17 7 11.2252 3.4356 2.8799 18 14 10.7495 6.1554 2.6420 19 1 12.1116 6.3165 3.2110 20 1 9.7597 6.8132 3.5323 21 1 10.6984 6.7818 1.2966 22 6 7.6895 2.0067 1.4256 23 6 3.5790 -0.7581 0.0043 24 8 2.2851 -1.0935 0.0064 25 1 -0.3634 -1.0276 0.0064 26 1 -0.3634 0.5194 0.8867 27 1 -0.3634 0.5083 -0.8932 28 1 1.9595 2.1231 -0.0004 29 1 6.1630 -0.1608 -0.0004 30 1 8.6502 -0.0909 -0.0022 31 1 8.2136 0.4929 -1.6258 32 1 10.5577 1.0722 -1.0985 33 1 9.5675 2.5454 -1.2380 34 1 10.9774 2.7322 0.7459 35 1 10.4053 1.1519 1.3398 36 1 10.9858 2.4956 2.8839 37 1 7.7587 1.1117 2.0438 38 1 6.9226 2.6706 1.8246 39 1 4.4103 -1.4476 0.0083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007205175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:13 Heat of formation + Delta-G solvation = -9.610120 kcal Electronic energy + Delta-G solvation = -21486.624965 eV Core-core repulsion = 18203.163986 eV Total energy + Delta-G solvation = -3283.460979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.72504 -39.48476 -37.44746 -34.50477 -33.27107 -32.77610 -31.95964 -30.40613 -28.76300 -26.79512 -25.09562 -24.03005 -22.26224 -21.59286 -21.19673 -19.83043 -19.17301 -17.81632 -17.36042 -16.49798 -16.16444 -15.68297 -14.72946 -14.65177 -14.22314 -13.99916 -13.59443 -13.46355 -13.37637 -13.36100 -13.27279 -12.97747 -12.68617 -12.36475 -12.09726 -11.95241 -11.19656 -10.74032 -10.68058 -10.36628 -10.12866 -10.04877 -9.96520 -9.88363 -9.70693 -9.30868 -8.92701 -8.76152 -8.28682 -6.86194 -6.03514 -3.20375 1.23130 1.89757 2.61193 3.27484 3.48400 3.54869 3.57467 3.75567 4.31681 4.55152 4.64430 4.78632 5.03563 5.13304 5.17334 5.27651 5.34897 5.36250 5.41999 5.57124 5.59587 5.61009 5.78066 5.94679 6.03862 6.12534 6.17992 6.38085 6.43853 6.56110 6.58348 6.72336 6.80795 6.89317 7.07586 7.18578 7.69379 8.06923 8.41555 8.61595 9.14197 9.88043 10.30082 11.25065 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028862 B = 0.003752 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.916272 B = 7461.774408 C = 8072.358883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.019 4.019 3 C -0.163 4.163 4 C -0.222 4.222 5 C 0.581 3.419 6 O -0.530 6.530 7 N -0.719 5.719 8 C 0.127 3.873 9 H 0.088 0.912 10 C -0.115 4.115 11 C -0.134 4.134 12 C 0.146 3.854 13 N -0.595 5.595 14 C -0.347 4.347 15 H 0.057 0.943 16 C -0.024 4.024 17 N -0.918 5.918 18 Si 1.065 2.935 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.293 1.293 22 C 0.144 3.856 23 C 0.012 3.988 24 O -0.175 6.175 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.159 0.841 29 H 0.391 0.609 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.017 0.983 36 H 0.268 0.732 37 H 0.016 0.984 38 H 0.060 0.940 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.276 -11.760 -7.995 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.182 4.182 4 C -0.227 4.227 5 C 0.367 3.633 6 O -0.407 6.407 7 N -0.370 5.370 8 C 0.022 3.978 9 H 0.106 0.894 10 C -0.153 4.153 11 C -0.174 4.174 12 C 0.021 3.979 13 N -0.319 5.319 14 C -0.477 4.477 15 H 0.075 0.925 16 C -0.225 4.225 17 N -0.558 5.558 18 Si 0.895 3.105 19 H -0.211 1.211 20 H -0.219 1.219 21 H -0.220 1.220 22 C 0.017 3.983 23 C -0.058 4.058 24 O -0.071 6.071 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.176 0.824 29 H 0.225 0.775 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -15.236 -10.021 -7.559 19.741 hybrid contribution -1.068 -1.507 -0.388 1.887 sum -16.304 -11.529 -7.948 21.492 Atomic orbital electron populations 1.20321 0.84693 1.04034 1.03851 1.22304 0.94119 0.83645 1.06717 1.22510 0.90079 0.99804 1.05821 1.21637 0.94913 0.93286 1.12833 1.17279 0.82207 0.87223 0.76569 1.90820 1.86952 1.13568 1.49312 1.45975 1.05830 1.09793 1.75381 1.21737 0.81510 0.94137 1.00430 0.89396 1.21676 0.95546 0.98520 0.99562 1.21990 0.95566 0.99032 1.00792 1.20928 0.91957 0.96140 0.88913 1.44054 1.04494 1.18895 1.64411 1.20022 0.99639 0.91084 1.36909 0.92513 1.25856 0.94624 1.06255 0.95798 1.70787 1.38590 1.03052 1.43360 0.83524 0.75941 0.74878 0.76186 1.21110 1.21940 1.21998 1.21183 0.89625 0.95561 0.91946 1.24371 0.84213 0.95429 1.01781 1.83712 1.16484 1.35539 1.71356 0.90500 0.89499 0.89551 0.82354 0.77542 0.92212 0.92745 0.92412 0.92028 0.90021 0.96484 0.92116 0.96656 0.92180 0.77270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 36.00 0.37 -0.06 16 2 C -0.02 -0.20 7.28 -35.74 -0.26 -0.46 16 3 C -0.16 -2.02 10.90 -37.46 -0.41 -2.43 16 4 C -0.22 -2.98 6.31 -103.28 -0.65 -3.63 16 5 C 0.58 9.71 7.78 -12.54 -0.10 9.61 16 6 O -0.53 -11.33 16.65 5.27 0.09 -11.24 16 7 N -0.72 -10.64 5.07 -54.78 -0.28 -10.91 16 8 C 0.13 2.33 2.60 -67.81 -0.18 2.15 16 9 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 10 C -0.11 -1.82 5.35 -26.69 -0.14 -1.97 16 11 C -0.13 -2.47 6.06 -26.83 -0.16 -2.63 16 12 C 0.15 3.41 4.66 -3.93 -0.02 3.39 16 13 N -0.59 -15.36 2.85 -172.58 -0.49 -15.85 16 14 C -0.35 -10.10 9.49 -15.06 -0.14 -10.24 16 15 H 0.06 1.70 7.94 -52.48 -0.42 1.28 16 16 C -0.02 -0.69 4.69 -17.43 -0.08 -0.77 16 17 N -0.92 -27.78 12.42 55.49 0.69 -27.09 16 18 Si 1.07 25.95 29.98 -169.99 -5.10 20.85 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.14 3.23 6.09 -3.71 -0.02 3.21 16 23 C 0.01 0.12 11.61 30.08 0.35 0.47 16 24 O -0.17 -1.83 10.52 7.64 0.08 -1.75 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.16 1.91 8.06 -52.48 -0.42 1.48 16 29 H 0.39 4.23 7.57 -40.82 -0.31 3.92 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 2.14 6.32 -51.93 -0.33 1.81 16 35 H 0.02 0.40 7.86 -51.93 -0.41 -0.01 16 36 H 0.27 8.14 6.69 -40.82 -0.27 7.86 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 1.48 7.93 -51.93 -0.41 1.07 16 39 H 0.21 1.22 7.47 -52.49 -0.39 0.83 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -35.28 324.62 -7.09 -42.37 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.53 Total: 2.07 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -1.44 Total: -3.35 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.08 Total: -53.85 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.17 Total: -12.99 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.10 Total: 20.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.28 -7.09 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007205175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.764 kcal (2) G-P(sol) polarization free energy of solvation -35.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds