Wall clock time and date at job start Tue Mar 31 2020 00:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34179 * 125.43791 * 2 1 4 4 C 1.47015 * 105.95605 * 180.14685 * 3 2 1 5 5 C 1.47380 * 127.19466 * 179.83547 * 4 3 2 6 6 O 1.21607 * 120.00229 * 359.71057 * 5 4 3 7 7 N 1.34782 * 119.99990 * 179.70692 * 5 4 3 8 8 C 1.46497 * 120.00036 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.52741 * 324.92760 * 8 7 5 10 10 C 1.53033 * 109.50005 * 204.83988 * 8 7 5 11 11 C 1.53044 * 109.53734 * 178.68562 * 10 8 7 12 12 C 1.52761 * 109.38356 * 61.24440 * 11 10 8 13 13 N 1.46932 * 109.00441 * 305.58599 * 12 11 10 14 14 C 1.36936 * 120.62484 * 233.58057 * 13 12 11 15 15 H 1.08003 * 119.99356 * 151.81679 * 14 13 12 16 16 C 1.38803 * 120.00756 * 331.82023 * 14 13 12 17 17 N 1.31618 * 119.99736 * 335.49342 * 16 14 13 18 18 Si 1.86799 * 120.00355 * 155.49660 * 16 14 13 19 19 H 1.48498 * 109.47329 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47105 * 59.99889 * 18 16 14 21 21 H 1.48503 * 109.46825 * 299.99639 * 18 16 14 22 22 C 1.46922 * 118.73835 * 53.31141 * 13 12 11 23 23 C 1.36416 * 105.61638 * 359.57536 * 4 3 2 24 24 O 1.33660 * 108.39428 * 0.25585 * 23 4 3 25 25 H 1.08997 * 109.47358 * 180.35599 * 1 2 3 26 26 H 1.08997 * 109.47367 * 300.35883 * 1 2 3 27 27 H 1.09010 * 109.47416 * 60.35586 * 1 2 3 28 28 H 1.08004 * 127.02554 * 359.97438 * 3 2 1 29 29 H 0.96995 * 120.00234 * 0.02562 * 7 5 4 30 30 H 1.09003 * 109.46353 * 298.70781 * 10 8 7 31 31 H 1.08996 * 109.45829 * 58.68278 * 10 8 7 32 32 H 1.09006 * 109.49810 * 181.31953 * 11 10 8 33 33 H 1.08997 * 109.49642 * 301.41273 * 11 10 8 34 34 H 1.09003 * 109.50983 * 185.70669 * 12 11 10 35 35 H 1.08993 * 109.43265 * 65.42107 * 12 11 10 36 36 H 0.97002 * 120.00481 * 354.24867 * 17 16 14 37 37 H 1.08999 * 109.58741 * 66.42770 * 22 13 12 38 38 H 1.08998 * 109.58390 * 186.85153 * 22 13 12 39 39 H 1.08002 * 125.80602 * 180.26558 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6709 0.6029 -0.0036 5 6 4.9024 1.4126 -0.0084 6 8 4.8319 2.6266 -0.0150 7 7 6.1067 0.8075 -0.0053 8 6 7.3308 1.6123 -0.0106 9 1 7.1731 2.5115 -0.6062 10 6 8.4766 0.7955 -0.6123 11 6 9.7480 1.6466 -0.6484 12 6 10.1328 2.0438 0.7756 13 7 8.9848 2.7001 1.4161 14 6 9.1183 3.9371 1.9883 15 1 8.2684 4.6013 2.0429 16 6 10.3458 4.3372 2.4980 17 7 11.2252 3.4356 2.8799 18 14 10.7495 6.1554 2.6420 19 1 12.1116 6.3165 3.2110 20 1 9.7597 6.8132 3.5323 21 1 10.6984 6.7818 1.2966 22 6 7.6895 2.0067 1.4256 23 6 3.5790 -0.7581 0.0043 24 8 2.2851 -1.0935 0.0064 25 1 -0.3634 -1.0276 0.0064 26 1 -0.3634 0.5194 0.8867 27 1 -0.3634 0.5083 -0.8932 28 1 1.9595 2.1231 -0.0004 29 1 6.1630 -0.1608 -0.0004 30 1 8.6502 -0.0909 -0.0022 31 1 8.2136 0.4929 -1.6258 32 1 10.5577 1.0722 -1.0985 33 1 9.5675 2.5454 -1.2380 34 1 10.9774 2.7322 0.7459 35 1 10.4053 1.1519 1.3398 36 1 10.9858 2.4956 2.8839 37 1 7.7587 1.1117 2.0438 38 1 6.9226 2.6706 1.8246 39 1 4.4103 -1.4476 0.0083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007205175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:07 Heat of formation + Delta-G solvation = -34.440840 kcal Electronic energy + Delta-G solvation = -21487.701706 eV Core-core repulsion = 18203.163986 eV Total energy + Delta-G solvation = -3284.537719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 5.19 seconds Orbital eigenvalues (eV) -43.57930 -40.90068 -39.11874 -36.20591 -34.46353 -34.02595 -32.94762 -32.32256 -30.32006 -27.53629 -27.12982 -25.26407 -24.01847 -23.14302 -22.13461 -21.30534 -20.55772 -19.43827 -18.71768 -17.35291 -17.31186 -17.07393 -16.32165 -16.17463 -15.79733 -15.52108 -15.47969 -14.98391 -14.61815 -14.32733 -14.13710 -13.99114 -13.80210 -13.78796 -13.65347 -13.03569 -12.72853 -12.63369 -12.47539 -11.96147 -11.89786 -11.85748 -11.73309 -11.28430 -11.15895 -10.88762 -10.64689 -10.20617 -9.57339 -8.97483 -8.30487 -5.46887 0.30880 0.99090 1.54821 1.61929 1.82021 1.84267 2.03182 2.27640 2.62062 3.15899 3.47778 3.59746 3.63520 3.76982 3.99350 4.00855 4.10165 4.30996 4.35059 4.42733 4.52941 4.66723 4.71330 4.72701 4.73712 4.87059 4.88224 4.98826 5.01890 5.08883 5.13124 5.24033 5.33083 5.36763 5.49766 5.77784 5.97219 6.35530 6.51157 7.00516 7.18580 7.72162 8.12876 8.93946 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028862 B = 0.003752 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.916272 B = 7461.774408 C = 8072.358883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.005 4.005 3 C -0.199 4.199 4 C -0.264 4.264 5 C 0.579 3.421 6 O -0.591 6.591 7 N -0.701 5.701 8 C 0.143 3.857 9 H 0.053 0.947 10 C -0.103 4.103 11 C -0.126 4.126 12 C 0.149 3.851 13 N -0.615 5.615 14 C -0.363 4.363 15 H 0.035 0.965 16 C -0.067 4.067 17 N -0.935 5.935 18 Si 1.113 2.887 19 H -0.283 1.283 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.147 3.853 23 C 0.049 3.951 24 O -0.173 6.173 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.148 0.852 29 H 0.416 0.584 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.016 0.984 36 H 0.257 0.743 37 H 0.025 0.975 38 H 0.022 0.978 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.153 -14.460 -9.214 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.054 4.054 3 C -0.219 4.219 4 C -0.268 4.268 5 C 0.369 3.631 6 O -0.472 6.472 7 N -0.352 5.352 8 C 0.036 3.964 9 H 0.071 0.929 10 C -0.141 4.141 11 C -0.165 4.165 12 C 0.024 3.976 13 N -0.341 5.341 14 C -0.493 4.493 15 H 0.053 0.947 16 C -0.264 4.264 17 N -0.576 5.576 18 Si 0.937 3.063 19 H -0.208 1.208 20 H -0.206 1.206 21 H -0.207 1.207 22 C 0.020 3.980 23 C -0.021 4.021 24 O -0.068 6.068 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.166 0.834 29 H 0.254 0.746 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -16.144 -12.803 -8.798 22.404 hybrid contribution -0.880 -0.733 0.026 1.146 sum -17.024 -13.536 -8.772 23.452 Atomic orbital electron populations 1.20534 0.81786 1.05536 1.05065 1.22878 0.95572 0.82634 1.04305 1.22610 0.90566 1.00371 1.08348 1.21432 0.93685 0.94744 1.16962 1.17804 0.83479 0.86783 0.75052 1.90787 1.87811 1.16385 1.52220 1.45659 1.04225 1.10757 1.74593 1.21251 0.83939 0.94332 0.96875 0.92853 1.21623 0.92559 0.97945 1.01970 1.21869 0.98154 0.99562 0.96924 1.20888 0.90042 0.94804 0.91851 1.44261 1.06234 1.18551 1.65006 1.20148 0.99336 0.92505 1.37332 0.94740 1.27176 0.94458 1.09539 0.95243 1.70896 1.38932 1.02709 1.45086 0.82886 0.75940 0.70516 0.76925 1.20838 1.20643 1.20677 1.21204 0.87298 0.94604 0.94903 1.25095 0.85007 0.94491 0.97518 1.83777 1.16679 1.35498 1.70832 0.88783 0.88406 0.88158 0.83437 0.74622 0.89847 0.88895 0.88880 0.93466 0.93602 0.96603 0.93351 0.95687 0.95950 0.72807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.40 71.23 0.74 0.05 16 2 C -0.01 -0.10 7.28 24.76 0.18 0.08 16 3 C -0.20 -4.96 10.90 23.65 0.26 -4.70 16 4 C -0.26 -6.84 6.31 -18.99 -0.12 -6.96 16 5 C 0.58 19.59 7.78 86.65 0.67 20.27 16 6 O -0.59 -26.83 16.65 -4.05 -0.07 -26.90 16 7 N -0.70 -19.72 5.07 -445.48 -2.26 -21.98 16 8 C 0.14 5.16 2.60 45.07 0.12 5.28 16 9 H 0.05 2.34 7.58 -2.39 -0.02 2.32 16 10 C -0.10 -2.94 5.35 30.62 0.16 -2.78 16 11 C -0.13 -4.40 6.06 30.53 0.19 -4.22 16 12 C 0.15 7.02 4.66 86.22 0.40 7.42 16 13 N -0.62 -32.84 2.85 -699.93 -2.00 -34.84 16 14 C -0.36 -22.05 9.49 84.03 0.80 -21.25 16 15 H 0.03 2.20 7.94 -2.91 -0.02 2.17 16 16 C -0.07 -4.00 4.69 84.86 0.40 -3.60 16 17 N -0.93 -57.93 12.42 21.65 0.27 -57.66 16 18 Si 1.11 53.46 29.98 68.60 2.06 55.51 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 C 0.15 6.76 6.09 86.36 0.53 7.28 16 23 C 0.05 0.81 11.61 67.39 0.78 1.59 16 24 O -0.17 -3.03 10.52 4.44 0.05 -2.98 16 25 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 29 H 0.42 7.46 7.57 -92.71 -0.70 6.76 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 2.46 6.32 -2.39 -0.02 2.45 16 35 H 0.02 0.74 7.86 -2.39 -0.02 0.73 16 36 H 0.26 16.04 6.69 -92.71 -0.62 15.42 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.02 1.16 7.93 -2.39 -0.02 1.14 16 39 H 0.26 1.54 7.47 -2.91 -0.02 1.52 16 Total: -1.00 -83.06 324.62 3.66 -79.41 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.50 Total: 10.96 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 5.11 Total: -1.53 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -3.99 Total: -114.47 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.02 Total: -29.88 kcal Atomic # 14 Polarization: 53.46 SS G_CDS: 2.06 Total: 55.51 kcal Total: -83.06 3.66 -79.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007205175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.965 kcal (2) G-P(sol) polarization free energy of solvation -83.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.19 seconds