Wall clock time and date at job start Tue Mar 31 2020 00:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34180 * 125.43927 * 2 1 4 4 C 1.47019 * 105.95422 * 179.97438 * 3 2 1 5 5 C 1.47379 * 127.18895 * 179.97438 * 4 3 2 6 6 O 1.21613 * 120.00216 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99712 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99879 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.49350 * 35.01177 * 8 7 5 10 10 C 1.53041 * 109.49579 * 155.06703 * 8 7 5 11 11 C 1.53035 * 109.54098 * 181.28854 * 10 8 7 12 12 C 1.53198 * 109.33907 * 298.68612 * 11 10 8 13 13 N 1.46924 * 108.77457 * 54.61370 * 12 11 10 14 14 C 1.36941 * 120.62737 * 126.36898 * 13 12 11 15 15 H 1.08003 * 119.99975 * 207.68960 * 14 13 12 16 16 C 1.38810 * 119.99864 * 27.69766 * 14 13 12 17 17 N 1.31616 * 120.00066 * 17.36282 * 16 14 13 18 18 Si 1.86795 * 120.00031 * 197.35494 * 16 14 13 19 19 H 1.48498 * 109.47087 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46987 * 120.00094 * 18 16 14 21 21 H 1.48495 * 109.47359 * 239.99937 * 18 16 14 22 22 C 1.46927 * 118.74364 * 306.39752 * 13 12 11 23 23 C 1.36423 * 105.61652 * 359.97438 * 4 3 2 24 24 O 1.33647 * 108.39427 * 359.77986 * 23 4 3 25 25 H 1.09002 * 109.47518 * 90.00168 * 1 2 3 26 26 H 1.09000 * 109.47787 * 330.00362 * 1 2 3 27 27 H 1.09009 * 109.47381 * 209.99858 * 1 2 3 28 28 H 1.07996 * 127.02106 * 359.93666 * 3 2 1 29 29 H 0.97000 * 119.99648 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.45965 * 301.34155 * 10 8 7 31 31 H 1.09002 * 109.45904 * 61.29618 * 10 8 7 32 32 H 1.08995 * 109.49829 * 178.71762 * 11 10 8 33 33 H 1.09001 * 109.50020 * 58.64934 * 11 10 8 34 34 H 1.09005 * 109.58134 * 294.83242 * 12 11 10 35 35 H 1.08996 * 109.58970 * 174.40337 * 12 11 10 36 36 H 0.97007 * 120.00542 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.58098 * 293.81961 * 22 13 12 38 38 H 1.08996 * 109.70357 * 173.46566 * 22 13 12 39 39 H 1.08003 * 125.79715 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9024 1.4125 0.0003 6 8 4.8319 2.6266 -0.0010 7 7 6.1068 0.8074 0.0015 8 6 7.3309 1.6122 0.0007 9 1 7.1723 2.5161 0.5889 10 6 8.4762 0.8006 0.6103 11 6 9.7478 1.6516 0.6394 12 6 10.1345 2.0349 -0.7925 13 7 8.9855 2.6884 -1.4339 14 6 9.1192 3.9207 -2.0160 15 1 8.2684 4.5829 -2.0798 16 6 10.3482 4.3186 -2.5240 17 7 11.2827 3.4231 -2.7628 18 14 10.6756 6.1250 -2.8691 19 1 9.4729 6.9220 -2.5175 20 1 11.8286 6.5837 -2.0534 21 1 10.9858 6.3054 -4.3100 22 6 7.6902 1.9950 -1.4384 23 6 3.5789 -0.7583 0.0015 24 8 2.2852 -1.0935 0.0064 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3635 0.8900 0.5138 27 1 -0.3634 -0.8901 0.5138 28 1 1.9595 2.1230 -0.0010 29 1 6.1629 -0.1610 0.0022 30 1 8.2122 0.5065 1.6262 31 1 8.6502 -0.0910 0.0080 32 1 10.5572 1.0809 1.0945 33 1 9.5676 2.5553 1.2217 34 1 10.4033 1.1381 -1.3508 35 1 10.9805 2.7218 -0.7711 36 1 12.1417 3.7012 -3.1175 37 1 7.7597 1.0950 -2.0494 38 1 6.9222 2.6536 -1.8440 39 1 4.4103 -1.4477 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007205178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:18 Heat of formation + Delta-G solvation = -7.009139 kcal Electronic energy + Delta-G solvation = -21444.263689 eV Core-core repulsion = 18160.915498 eV Total energy + Delta-G solvation = -3283.348192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.69055 -39.40599 -37.25342 -34.30790 -33.23717 -32.65547 -31.89025 -30.44431 -28.71944 -26.75750 -25.26860 -23.97388 -22.11375 -21.60347 -21.16347 -19.77462 -19.14156 -17.76981 -16.73693 -16.46638 -16.11108 -15.55601 -14.80316 -14.61173 -14.41778 -13.90390 -13.45850 -13.43443 -13.34240 -13.28056 -13.05489 -12.92210 -12.39428 -12.37856 -12.03495 -11.77811 -11.08583 -10.88958 -10.77626 -10.24637 -10.20101 -9.99638 -9.89344 -9.84116 -9.61586 -9.55266 -8.84594 -8.72037 -8.37964 -6.65351 -5.76165 -3.18031 1.26971 1.93305 2.64195 3.33668 3.41087 3.48913 3.53197 3.53801 4.35201 4.54306 4.60151 4.80863 5.07591 5.14995 5.26142 5.35752 5.39624 5.43028 5.55600 5.61225 5.64061 5.73184 5.81602 6.09179 6.16567 6.20366 6.25337 6.53680 6.62354 6.68140 6.70956 6.83478 6.86226 7.01594 7.37381 7.66117 7.75919 7.86216 8.44381 8.50600 9.24640 9.86898 10.42376 11.32606 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028550 B = 0.003750 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.507472 B = 7465.825961 C = 8113.010553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.020 4.020 3 C -0.162 4.162 4 C -0.222 4.222 5 C 0.580 3.420 6 O -0.531 6.531 7 N -0.719 5.719 8 C 0.127 3.873 9 H 0.087 0.913 10 C -0.114 4.114 11 C -0.140 4.140 12 C 0.167 3.833 13 N -0.588 5.588 14 C -0.249 4.249 15 H 0.067 0.933 16 C 0.001 3.999 17 N -0.904 5.904 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.142 3.858 23 C 0.012 3.988 24 O -0.175 6.175 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.391 0.609 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.019 0.981 35 H 0.090 0.910 36 H 0.253 0.747 37 H 0.017 0.983 38 H 0.058 0.942 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.957 -11.638 7.696 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 C -0.182 4.182 4 C -0.227 4.227 5 C 0.367 3.633 6 O -0.408 6.408 7 N -0.369 5.369 8 C 0.021 3.979 9 H 0.105 0.895 10 C -0.153 4.153 11 C -0.179 4.179 12 C 0.041 3.959 13 N -0.311 5.311 14 C -0.379 4.379 15 H 0.085 0.915 16 C -0.197 4.197 17 N -0.549 5.549 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.217 1.217 22 C 0.014 3.986 23 C -0.058 4.058 24 O -0.071 6.071 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.176 0.824 29 H 0.224 0.776 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -15.954 -10.972 7.613 20.806 hybrid contribution 0.509 0.481 -0.249 0.743 sum -15.446 -10.491 7.364 20.071 Atomic orbital electron populations 1.20314 0.84733 1.04122 1.03686 1.22298 0.94101 0.83673 1.06798 1.22527 0.90117 0.99743 1.05777 1.21655 0.94943 0.93295 1.12778 1.17271 0.82211 0.87215 0.76606 1.90816 1.86967 1.13562 1.49427 1.45998 1.05862 1.09816 1.75232 1.21769 0.81430 0.94127 1.00526 0.89473 1.21678 0.95686 0.98644 0.99255 1.22181 0.95279 0.98728 1.01750 1.20851 0.91480 0.96615 0.86933 1.44012 1.04258 1.18768 1.64030 1.19284 0.96408 0.90651 1.31533 0.91481 1.25017 0.98122 0.97861 0.98683 1.70050 1.05937 1.31560 1.47362 0.86212 0.77968 0.85170 0.77438 1.20135 1.21542 1.21743 1.21180 0.89738 0.95782 0.91850 1.24382 0.84185 0.95450 1.01751 1.83700 1.16499 1.35529 1.71416 0.89979 0.89200 0.90505 0.82382 0.77563 0.93062 0.92242 0.92689 0.92389 0.96304 0.89215 0.93736 0.96503 0.92355 0.77242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 36.00 0.37 -0.06 16 2 C -0.02 -0.21 7.28 -35.74 -0.26 -0.47 16 3 C -0.16 -2.01 10.90 -37.45 -0.41 -2.42 16 4 C -0.22 -2.98 6.31 -103.27 -0.65 -3.63 16 5 C 0.58 9.68 7.78 -12.54 -0.10 9.58 16 6 O -0.53 -11.28 16.65 5.27 0.09 -11.19 16 7 N -0.72 -10.64 5.07 -54.78 -0.28 -10.92 16 8 C 0.13 2.32 2.60 -67.82 -0.18 2.14 16 9 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 10 C -0.11 -1.84 5.36 -26.69 -0.14 -1.99 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 13 N -0.59 -15.18 2.99 -172.32 -0.52 -15.70 16 14 C -0.25 -7.12 9.59 -15.06 -0.14 -7.27 16 15 H 0.07 1.94 7.89 -52.48 -0.41 1.53 16 16 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 17 N -0.90 -26.52 11.19 55.49 0.62 -25.90 16 18 Si 0.90 22.30 29.59 -169.99 -5.03 17.27 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C 0.14 3.17 6.09 -3.71 -0.02 3.15 16 23 C 0.01 0.12 11.61 30.08 0.35 0.47 16 24 O -0.18 -1.84 10.52 7.65 0.08 -1.76 16 25 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.39 4.26 7.57 -40.82 -0.31 3.95 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 2.39 6.03 -51.93 -0.31 2.08 16 36 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 1.41 7.94 -51.93 -0.41 0.99 16 39 H 0.21 1.23 7.47 -52.48 -0.39 0.84 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -34.34 325.68 -7.17 -41.51 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.60 Total: 1.15 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.45 Total: 0.64 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.17 Total: -52.52 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.17 Total: -12.95 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.34 -7.17 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007205178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.499 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds