Wall clock time and date at job start Tue Mar 31 2020 00:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34180 * 125.43927 * 2 1 4 4 C 1.47019 * 105.95422 * 179.97438 * 3 2 1 5 5 C 1.47379 * 127.18895 * 179.97438 * 4 3 2 6 6 O 1.21613 * 120.00216 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99712 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99879 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.49350 * 35.01177 * 8 7 5 10 10 C 1.53041 * 109.49579 * 155.06703 * 8 7 5 11 11 C 1.53035 * 109.54098 * 181.28854 * 10 8 7 12 12 C 1.53198 * 109.33907 * 298.68612 * 11 10 8 13 13 N 1.46924 * 108.77457 * 54.61370 * 12 11 10 14 14 C 1.36941 * 120.62737 * 126.36898 * 13 12 11 15 15 H 1.08003 * 119.99975 * 207.68960 * 14 13 12 16 16 C 1.38810 * 119.99864 * 27.69766 * 14 13 12 17 17 N 1.31616 * 120.00066 * 17.36282 * 16 14 13 18 18 Si 1.86795 * 120.00031 * 197.35494 * 16 14 13 19 19 H 1.48498 * 109.47087 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46987 * 120.00094 * 18 16 14 21 21 H 1.48495 * 109.47359 * 239.99937 * 18 16 14 22 22 C 1.46927 * 118.74364 * 306.39752 * 13 12 11 23 23 C 1.36423 * 105.61652 * 359.97438 * 4 3 2 24 24 O 1.33647 * 108.39427 * 359.77986 * 23 4 3 25 25 H 1.09002 * 109.47518 * 90.00168 * 1 2 3 26 26 H 1.09000 * 109.47787 * 330.00362 * 1 2 3 27 27 H 1.09009 * 109.47381 * 209.99858 * 1 2 3 28 28 H 1.07996 * 127.02106 * 359.93666 * 3 2 1 29 29 H 0.97000 * 119.99648 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.45965 * 301.34155 * 10 8 7 31 31 H 1.09002 * 109.45904 * 61.29618 * 10 8 7 32 32 H 1.08995 * 109.49829 * 178.71762 * 11 10 8 33 33 H 1.09001 * 109.50020 * 58.64934 * 11 10 8 34 34 H 1.09005 * 109.58134 * 294.83242 * 12 11 10 35 35 H 1.08996 * 109.58970 * 174.40337 * 12 11 10 36 36 H 0.97007 * 120.00542 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.58098 * 293.81961 * 22 13 12 38 38 H 1.08996 * 109.70357 * 173.46566 * 22 13 12 39 39 H 1.08003 * 125.79715 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9024 1.4125 0.0003 6 8 4.8319 2.6266 -0.0010 7 7 6.1068 0.8074 0.0015 8 6 7.3309 1.6122 0.0007 9 1 7.1723 2.5161 0.5889 10 6 8.4762 0.8006 0.6103 11 6 9.7478 1.6516 0.6394 12 6 10.1345 2.0349 -0.7925 13 7 8.9855 2.6884 -1.4339 14 6 9.1192 3.9207 -2.0160 15 1 8.2684 4.5829 -2.0798 16 6 10.3482 4.3186 -2.5240 17 7 11.2827 3.4231 -2.7628 18 14 10.6756 6.1250 -2.8691 19 1 9.4729 6.9220 -2.5175 20 1 11.8286 6.5837 -2.0534 21 1 10.9858 6.3054 -4.3100 22 6 7.6902 1.9950 -1.4384 23 6 3.5789 -0.7583 0.0015 24 8 2.2852 -1.0935 0.0064 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3635 0.8900 0.5138 27 1 -0.3634 -0.8901 0.5138 28 1 1.9595 2.1230 -0.0010 29 1 6.1629 -0.1610 0.0022 30 1 8.2122 0.5065 1.6262 31 1 8.6502 -0.0910 0.0080 32 1 10.5572 1.0809 1.0945 33 1 9.5676 2.5553 1.2217 34 1 10.4033 1.1381 -1.3508 35 1 10.9805 2.7218 -0.7711 36 1 12.1417 3.7012 -3.1175 37 1 7.7597 1.0950 -2.0494 38 1 6.9222 2.6536 -1.8440 39 1 4.4103 -1.4477 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007205178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:16 Heat of formation + Delta-G solvation = -30.849061 kcal Electronic energy + Delta-G solvation = -21445.297466 eV Core-core repulsion = 18160.915498 eV Total energy + Delta-G solvation = -3284.381968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -43.54393 -40.80853 -38.90955 -35.97933 -34.35652 -33.98406 -32.90322 -32.35778 -30.26757 -27.50769 -27.27483 -25.19400 -23.89775 -23.11956 -22.09947 -21.25013 -20.50266 -18.75756 -18.64779 -17.32029 -17.24552 -17.11180 -16.62220 -16.07835 -15.74846 -15.42745 -15.20126 -14.80276 -14.47052 -14.19268 -14.10279 -13.98706 -13.77531 -13.73811 -13.42396 -13.05582 -12.79038 -12.66901 -12.58268 -12.13363 -11.98617 -11.78567 -11.60393 -11.32937 -11.08389 -10.84814 -10.63964 -10.16856 -9.54216 -8.71640 -7.92785 -5.38132 0.35136 1.02718 1.42181 1.43773 1.55753 1.87668 2.09429 2.32946 2.49299 3.21137 3.56597 3.66945 3.72829 3.86796 4.05840 4.10042 4.23726 4.39943 4.46696 4.51830 4.60584 4.74304 4.76014 4.80201 4.89748 4.91415 5.00556 5.09862 5.11896 5.16079 5.26371 5.39164 5.44451 5.54129 5.61616 5.75538 6.00467 6.34803 6.57472 7.10843 7.24288 7.80333 8.29834 9.12918 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028550 B = 0.003750 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.507472 B = 7465.825961 C = 8113.010553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.007 4.007 3 C -0.198 4.198 4 C -0.263 4.263 5 C 0.580 3.420 6 O -0.590 6.590 7 N -0.701 5.701 8 C 0.142 3.858 9 H 0.055 0.945 10 C -0.103 4.103 11 C -0.130 4.130 12 C 0.170 3.830 13 N -0.608 5.608 14 C -0.270 4.270 15 H 0.051 0.949 16 C -0.043 4.043 17 N -0.928 5.928 18 Si 0.966 3.034 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.287 1.287 22 C 0.145 3.855 23 C 0.049 3.951 24 O -0.173 6.173 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.148 0.852 29 H 0.415 0.585 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.008 0.992 35 H 0.055 0.945 36 H 0.253 0.747 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.877 -14.228 8.796 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.055 4.055 3 C -0.218 4.218 4 C -0.268 4.268 5 C 0.369 3.631 6 O -0.472 6.472 7 N -0.352 5.352 8 C 0.036 3.964 9 H 0.073 0.927 10 C -0.141 4.141 11 C -0.170 4.170 12 C 0.045 3.955 13 N -0.332 5.332 14 C -0.400 4.400 15 H 0.068 0.932 16 C -0.239 4.239 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.213 1.213 22 C 0.018 3.982 23 C -0.022 4.022 24 O -0.069 6.069 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.166 0.834 29 H 0.253 0.747 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -16.896 -13.632 8.730 23.399 hybrid contribution 0.725 1.233 -0.636 1.565 sum -16.172 -12.399 8.095 21.927 Atomic orbital electron populations 1.20526 0.81847 1.05559 1.04962 1.22873 0.95554 0.82677 1.04434 1.22631 0.90584 1.00323 1.08247 1.21451 0.93743 0.94735 1.16860 1.17778 0.83442 0.86784 0.75110 1.90784 1.87807 1.16313 1.52266 1.45683 1.04289 1.10765 1.74479 1.21282 0.83741 0.94320 0.97099 0.92681 1.21615 0.92817 0.98054 1.01605 1.22023 0.97806 0.99339 0.97802 1.20748 0.89936 0.94921 0.89856 1.44238 1.05884 1.18509 1.64541 1.19421 0.96350 0.92046 1.32174 0.93170 1.25709 0.97775 1.01681 0.98718 1.70168 1.06102 1.33143 1.47923 0.85245 0.77724 0.80449 0.77261 1.20049 1.20819 1.21334 1.21206 0.87507 0.94825 0.94693 1.25101 0.84966 0.94541 0.97548 1.83764 1.16700 1.35503 1.70904 0.88656 0.88088 0.88744 0.83401 0.74705 0.89248 0.90121 0.89445 0.93561 0.97441 0.92679 0.93780 0.95827 0.95631 0.72832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.40 71.23 0.74 0.05 16 2 C -0.01 -0.13 7.28 24.76 0.18 0.05 16 3 C -0.20 -4.91 10.90 23.65 0.26 -4.66 16 4 C -0.26 -6.82 6.31 -18.99 -0.12 -6.94 16 5 C 0.58 19.48 7.78 86.65 0.67 20.15 16 6 O -0.59 -26.53 16.65 -4.07 -0.07 -26.60 16 7 N -0.70 -19.73 5.07 -445.48 -2.26 -21.99 16 8 C 0.14 5.13 2.60 45.07 0.12 5.25 16 9 H 0.05 2.38 7.58 -2.39 -0.02 2.37 16 10 C -0.10 -3.00 5.36 30.62 0.16 -2.84 16 11 C -0.13 -4.66 6.08 30.67 0.19 -4.47 16 12 C 0.17 8.21 5.31 86.36 0.46 8.66 16 13 N -0.61 -32.40 2.99 -699.10 -2.09 -34.49 16 14 C -0.27 -16.05 9.59 84.03 0.81 -15.25 16 15 H 0.05 3.08 7.89 -2.91 -0.02 3.05 16 16 C -0.04 -2.50 4.91 84.86 0.42 -2.08 16 17 N -0.93 -55.63 11.19 21.65 0.24 -55.38 16 18 Si 0.97 46.98 29.59 68.60 2.03 49.01 16 19 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 22 C 0.14 6.62 6.09 86.36 0.53 7.15 16 23 C 0.05 0.81 11.61 67.40 0.78 1.59 16 24 O -0.17 -3.06 10.52 4.48 0.05 -3.02 16 25 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 29 H 0.42 7.55 7.57 -92.71 -0.70 6.85 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 35 H 0.05 3.02 6.03 -2.39 -0.01 3.00 16 36 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 37 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.02 1.30 7.94 -2.39 -0.02 1.28 16 39 H 0.26 1.59 7.47 -2.91 -0.02 1.57 16 Total: -1.00 -79.99 325.68 3.44 -76.54 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.35 Total: 9.25 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.19 Total: 6.67 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -4.11 Total: -111.86 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.02 Total: -29.61 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -79.99 3.44 -76.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007205178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.695 kcal (2) G-P(sol) polarization free energy of solvation -79.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds