Wall clock time and date at job start Tue Mar 31 2020 01:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35126 * 126.44644 * 2 1 4 4 O 1.33937 * 108.77087 * 179.75177 * 3 2 1 5 5 C 1.34917 * 109.38113 * 0.41196 * 4 3 2 6 6 C 1.46648 * 125.98547 * 179.85908 * 5 4 3 7 7 O 1.21703 * 120.00267 * 179.68487 * 6 5 4 8 8 N 1.34777 * 120.00162 * 359.68817 * 6 5 4 9 9 C 1.46503 * 119.99726 * 180.27281 * 8 6 5 10 10 H 1.09004 * 109.50006 * 34.79427 * 9 8 6 11 11 C 1.53046 * 109.49363 * 154.88622 * 9 8 6 12 12 C 1.53041 * 109.53773 * 181.31577 * 11 9 8 13 13 C 1.53191 * 109.31491 * 298.63417 * 12 11 9 14 14 N 1.46931 * 108.77386 * 54.63407 * 13 12 11 15 15 C 1.36937 * 120.62888 * 126.40880 * 14 13 12 16 16 H 1.07991 * 120.00440 * 331.81849 * 15 14 13 17 17 C 1.38815 * 119.99640 * 151.80795 * 15 14 13 18 18 N 1.31614 * 120.00167 * 343.08979 * 17 15 14 19 19 Si 1.86800 * 119.99836 * 163.08196 * 17 15 14 20 20 H 1.48497 * 109.47055 * 90.00589 * 19 17 15 21 21 H 1.48500 * 109.47084 * 210.00475 * 19 17 15 22 22 H 1.48498 * 109.47480 * 330.00543 * 19 17 15 23 23 C 1.46928 * 118.73977 * 306.39349 * 14 13 12 24 24 C 1.36553 * 108.02447 * 359.59225 * 5 4 3 25 25 H 1.08996 * 109.47189 * 269.99596 * 1 2 3 26 26 H 1.09000 * 109.46894 * 29.99750 * 1 2 3 27 27 H 1.08996 * 109.47442 * 149.99803 * 1 2 3 28 28 H 1.08005 * 125.61471 * 0.04143 * 3 2 1 29 29 H 0.97000 * 119.99918 * 359.97438 * 8 6 5 30 30 H 1.08999 * 109.45887 * 301.33775 * 11 9 8 31 31 H 1.09001 * 109.46340 * 61.29477 * 11 9 8 32 32 H 1.09000 * 109.49494 * 178.68237 * 12 11 9 33 33 H 1.09007 * 109.49604 * 58.58884 * 12 11 9 34 34 H 1.08999 * 109.58406 * 294.85183 * 13 12 11 35 35 H 1.09000 * 109.70379 * 174.48798 * 13 12 11 36 36 H 0.97003 * 120.00062 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.58628 * 293.81917 * 23 14 13 38 38 H 1.09000 * 109.58896 * 173.39643 * 23 14 13 39 39 H 1.07994 * 126.64436 * 180.22517 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6803 0.0055 5 6 3.6260 -0.6682 0.0000 6 6 4.8378 -1.4942 0.0004 7 8 4.7470 -2.7078 0.0008 8 7 6.0520 -0.9093 0.0004 9 6 7.2625 -1.7345 -0.0052 10 1 7.0868 -2.6343 -0.5948 11 6 8.4192 -0.9404 -0.6166 12 6 9.6761 -1.8127 -0.6531 13 6 10.0618 -2.2056 0.7765 14 7 8.9044 -2.8415 1.4207 15 6 9.0199 -4.0768 2.0002 16 1 9.7523 -4.7798 1.6318 17 6 8.1958 -4.4253 3.0615 18 7 7.5484 -3.4919 3.7261 19 14 8.0054 -6.2193 3.5460 20 1 9.0365 -6.5716 4.5549 21 1 6.6542 -6.4355 4.1229 22 1 8.1741 -7.0770 2.3456 23 6 7.6209 -2.1265 1.4316 24 6 2.3407 -1.1293 -0.0001 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.9770 2.1145 0.0006 29 1 6.1244 0.0580 -0.0003 30 1 8.1567 -0.6390 -1.6307 31 1 8.6102 -0.0534 -0.0125 32 1 10.4932 -1.2545 -1.1100 33 1 9.4781 -2.7119 -1.2367 34 1 10.3475 -1.3148 1.3358 35 1 10.8969 -2.9057 0.7526 36 1 6.9722 -3.7355 4.4675 37 1 7.7076 -1.2293 2.0444 38 1 6.8447 -2.7752 1.8378 39 1 2.0265 -2.1625 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008238739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:57 Heat of formation + Delta-G solvation = -6.644127 kcal Electronic energy + Delta-G solvation = -21793.724094 eV Core-core repulsion = 18510.391730 eV Total energy + Delta-G solvation = -3283.332364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.67723 -39.29236 -37.25702 -34.49238 -33.96736 -32.66097 -30.69845 -30.00004 -28.86809 -27.25058 -25.25367 -23.71866 -22.15931 -21.41193 -21.07827 -19.75369 -19.19966 -17.77618 -16.76399 -16.31165 -16.20451 -15.57162 -14.88341 -14.15612 -14.05206 -13.84482 -13.63416 -13.45977 -13.31016 -13.05533 -12.94823 -12.69559 -12.39299 -12.31090 -11.94982 -11.75813 -11.01030 -10.79238 -10.68212 -10.48679 -10.24672 -10.10983 -9.92582 -9.73001 -9.68697 -9.51016 -8.73135 -8.47695 -8.41414 -6.63607 -5.73688 -3.17429 1.16706 2.29228 2.75814 3.41939 3.46920 3.51306 3.53685 3.54743 4.55646 4.69267 4.71604 4.87769 5.27450 5.36454 5.41221 5.44131 5.54710 5.58310 5.63992 5.67049 5.71366 5.86607 5.93730 6.07802 6.15273 6.33337 6.36149 6.42877 6.47704 6.69393 6.75180 6.81568 6.91209 6.97910 7.30341 7.73175 7.82640 7.88225 8.45983 8.51242 9.24664 9.88718 10.43708 11.34461 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.005013 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.273843 B = 5584.472007 C = 6740.159459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.194 4.194 3 C -0.020 4.020 4 O -0.163 6.163 5 C -0.061 4.061 6 C 0.596 3.404 7 O -0.511 6.511 8 N -0.707 5.707 9 C 0.115 3.885 10 H 0.085 0.915 11 C -0.116 4.116 12 C -0.131 4.131 13 C 0.142 3.858 14 N -0.588 5.588 15 C -0.258 4.258 16 H 0.066 0.934 17 C 0.007 3.993 18 N -0.899 5.899 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.166 3.834 24 C -0.127 4.127 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.206 0.794 29 H 0.397 0.603 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.056 0.944 36 H 0.254 0.746 37 H 0.019 0.981 38 H 0.095 0.905 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 11.411 -9.305 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.195 4.195 3 C -0.090 4.090 4 O -0.058 6.058 5 C -0.113 4.113 6 C 0.380 3.620 7 O -0.388 6.388 8 N -0.357 5.357 9 C 0.010 3.990 10 H 0.103 0.897 11 C -0.154 4.154 12 C -0.170 4.170 13 C 0.015 3.985 14 N -0.311 5.311 15 C -0.387 4.387 16 H 0.084 0.916 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.203 1.203 23 C 0.039 3.961 24 C -0.148 4.148 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.223 0.777 29 H 0.231 0.769 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.113 0.887 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.097 10.656 -9.141 16.729 hybrid contribution -0.373 -0.323 0.380 0.623 sum -9.470 10.333 -8.760 16.529 Atomic orbital electron populations 1.20164 0.88818 1.02640 1.02274 1.20462 0.97569 0.92515 1.08955 1.24109 0.80147 0.99858 1.04845 1.84059 1.29203 1.21957 1.70585 1.22366 0.96576 0.80253 1.12152 1.16546 0.81302 0.86466 0.77654 1.90928 1.85660 1.12076 1.50129 1.46006 1.05681 1.10349 1.73656 1.22090 0.81416 0.93238 1.02231 0.89699 1.21679 0.95577 0.98678 0.99483 1.22001 0.95893 0.99045 1.00092 1.20966 0.91038 0.96007 0.90447 1.43960 1.03519 1.18538 1.65074 1.19138 1.19977 0.89759 1.09849 0.91581 1.25046 1.00888 0.97640 0.95637 1.70010 1.32391 1.31063 1.20849 0.86305 0.77174 0.85090 0.78262 1.21413 1.21498 1.20342 1.21096 0.89873 0.96140 0.88951 1.21837 0.90639 1.00547 1.01787 0.91309 0.91629 0.91351 0.77718 0.76891 0.92988 0.92137 0.92543 0.92053 0.96386 0.92556 0.93622 0.96340 0.88699 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.39 36.00 0.37 -0.28 16 2 C -0.19 -2.19 6.14 -104.93 -0.64 -2.84 16 3 C -0.02 -0.21 12.00 29.63 0.36 0.15 16 4 O -0.16 -2.18 10.40 4.97 0.05 -2.13 16 5 C -0.06 -0.97 7.13 -36.80 -0.26 -1.24 16 6 C 0.60 11.35 7.75 -12.87 -0.10 11.25 16 7 O -0.51 -11.77 16.53 5.19 0.09 -11.69 16 8 N -0.71 -12.40 5.08 -55.00 -0.28 -12.67 16 9 C 0.12 2.30 2.61 -67.81 -0.18 2.12 16 10 H 0.08 1.90 7.57 -51.93 -0.39 1.50 16 11 C -0.12 -1.90 5.35 -26.69 -0.14 -2.05 16 12 C -0.13 -2.22 6.08 -26.61 -0.16 -2.39 16 13 C 0.14 2.97 6.52 -3.71 -0.02 2.94 16 14 N -0.59 -15.14 2.99 -172.32 -0.52 -15.66 16 15 C -0.26 -7.32 9.58 -15.06 -0.14 -7.46 16 16 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 17 C 0.01 0.20 4.92 -17.43 -0.09 0.12 16 18 N -0.90 -27.21 11.20 55.49 0.62 -26.59 16 19 Si 0.90 22.71 29.59 -169.99 -5.03 17.68 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 23 C 0.17 4.14 4.88 -3.71 -0.02 4.12 16 24 C -0.13 -1.84 10.57 -39.39 -0.42 -2.26 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.21 1.21 8.06 -52.48 -0.42 0.78 16 29 H 0.40 5.76 8.36 -40.82 -0.34 5.42 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 36 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 2.77 6.06 -51.93 -0.31 2.46 16 39 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -33.54 326.53 -7.25 -40.79 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.66 Total: 3.15 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.45 Total: 2.19 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.17 Total: -54.92 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.14 Total: -13.82 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.54 -7.25 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008238739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.144 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds