Wall clock time and date at job start Tue Mar 31 2020 01:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35126 * 126.44644 * 2 1 4 4 O 1.33937 * 108.77087 * 179.75177 * 3 2 1 5 5 C 1.34917 * 109.38113 * 0.41196 * 4 3 2 6 6 C 1.46648 * 125.98547 * 179.85908 * 5 4 3 7 7 O 1.21703 * 120.00267 * 179.68487 * 6 5 4 8 8 N 1.34777 * 120.00162 * 359.68817 * 6 5 4 9 9 C 1.46503 * 119.99726 * 180.27281 * 8 6 5 10 10 H 1.09004 * 109.50006 * 34.79427 * 9 8 6 11 11 C 1.53046 * 109.49363 * 154.88622 * 9 8 6 12 12 C 1.53041 * 109.53773 * 181.31577 * 11 9 8 13 13 C 1.53191 * 109.31491 * 298.63417 * 12 11 9 14 14 N 1.46931 * 108.77386 * 54.63407 * 13 12 11 15 15 C 1.36937 * 120.62888 * 126.40880 * 14 13 12 16 16 H 1.07991 * 120.00440 * 331.81849 * 15 14 13 17 17 C 1.38815 * 119.99640 * 151.80795 * 15 14 13 18 18 N 1.31614 * 120.00167 * 343.08979 * 17 15 14 19 19 Si 1.86800 * 119.99836 * 163.08196 * 17 15 14 20 20 H 1.48497 * 109.47055 * 90.00589 * 19 17 15 21 21 H 1.48500 * 109.47084 * 210.00475 * 19 17 15 22 22 H 1.48498 * 109.47480 * 330.00543 * 19 17 15 23 23 C 1.46928 * 118.73977 * 306.39349 * 14 13 12 24 24 C 1.36553 * 108.02447 * 359.59225 * 5 4 3 25 25 H 1.08996 * 109.47189 * 269.99596 * 1 2 3 26 26 H 1.09000 * 109.46894 * 29.99750 * 1 2 3 27 27 H 1.08996 * 109.47442 * 149.99803 * 1 2 3 28 28 H 1.08005 * 125.61471 * 0.04143 * 3 2 1 29 29 H 0.97000 * 119.99918 * 359.97438 * 8 6 5 30 30 H 1.08999 * 109.45887 * 301.33775 * 11 9 8 31 31 H 1.09001 * 109.46340 * 61.29477 * 11 9 8 32 32 H 1.09000 * 109.49494 * 178.68237 * 12 11 9 33 33 H 1.09007 * 109.49604 * 58.58884 * 12 11 9 34 34 H 1.08999 * 109.58406 * 294.85183 * 13 12 11 35 35 H 1.09000 * 109.70379 * 174.48798 * 13 12 11 36 36 H 0.97003 * 120.00062 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.58628 * 293.81917 * 23 14 13 38 38 H 1.09000 * 109.58896 * 173.39643 * 23 14 13 39 39 H 1.07994 * 126.64436 * 180.22517 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6803 0.0055 5 6 3.6260 -0.6682 0.0000 6 6 4.8378 -1.4942 0.0004 7 8 4.7470 -2.7078 0.0008 8 7 6.0520 -0.9093 0.0004 9 6 7.2625 -1.7345 -0.0052 10 1 7.0868 -2.6343 -0.5948 11 6 8.4192 -0.9404 -0.6166 12 6 9.6761 -1.8127 -0.6531 13 6 10.0618 -2.2056 0.7765 14 7 8.9044 -2.8415 1.4207 15 6 9.0199 -4.0768 2.0002 16 1 9.7523 -4.7798 1.6318 17 6 8.1958 -4.4253 3.0615 18 7 7.5484 -3.4919 3.7261 19 14 8.0054 -6.2193 3.5460 20 1 9.0365 -6.5716 4.5549 21 1 6.6542 -6.4355 4.1229 22 1 8.1741 -7.0770 2.3456 23 6 7.6209 -2.1265 1.4316 24 6 2.3407 -1.1293 -0.0001 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.9770 2.1145 0.0006 29 1 6.1244 0.0580 -0.0003 30 1 8.1567 -0.6390 -1.6307 31 1 8.6102 -0.0534 -0.0125 32 1 10.4932 -1.2545 -1.1100 33 1 9.4781 -2.7119 -1.2367 34 1 10.3475 -1.3148 1.3358 35 1 10.8969 -2.9057 0.7526 36 1 6.9722 -3.7355 4.4675 37 1 7.7076 -1.2293 2.0444 38 1 6.8447 -2.7752 1.8378 39 1 2.0265 -2.1625 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008238739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:55 Heat of formation + Delta-G solvation = -30.014049 kcal Electronic energy + Delta-G solvation = -21794.737490 eV Core-core repulsion = 18510.391730 eV Total energy + Delta-G solvation = -3284.345759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.70365 -40.84207 -38.94894 -35.98476 -35.15875 -34.45257 -32.08971 -31.72128 -30.36009 -28.08922 -27.26625 -25.07091 -23.95155 -22.93224 -22.16053 -21.30277 -20.61639 -18.94817 -18.76494 -17.42228 -17.32453 -17.25292 -16.70437 -15.88813 -15.70481 -15.31799 -15.21990 -14.74961 -14.46315 -14.18803 -14.10404 -14.03567 -13.94649 -13.57344 -13.46207 -12.96875 -12.63818 -12.56950 -12.55441 -12.32341 -12.10133 -11.78352 -11.67203 -11.31741 -11.25847 -10.75257 -10.58136 -10.27232 -9.55810 -8.71505 -7.91613 -5.37927 0.01076 1.33679 1.39650 1.44350 1.52553 1.63120 2.08025 2.21143 2.48204 3.25190 3.60618 3.77752 3.81908 3.91858 4.04806 4.10677 4.23160 4.33636 4.45132 4.56785 4.66334 4.79671 4.88302 4.89021 4.90946 5.03364 5.07552 5.08171 5.16273 5.18384 5.27697 5.34110 5.50009 5.51821 5.59679 5.71391 5.83785 6.33715 6.47296 7.03805 7.10909 7.82268 8.31846 9.13579 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.005013 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.273843 B = 5584.472007 C = 6740.159459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.206 4.206 3 C 0.008 3.992 4 O -0.165 6.165 5 C -0.098 4.098 6 C 0.592 3.408 7 O -0.567 6.567 8 N -0.696 5.696 9 C 0.129 3.871 10 H 0.057 0.943 11 C -0.107 4.107 12 C -0.121 4.121 13 C 0.134 3.866 14 N -0.610 5.610 15 C -0.267 4.267 16 H 0.070 0.930 17 C -0.050 4.050 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.271 1.271 23 C 0.179 3.821 24 C -0.130 4.130 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.259 0.741 29 H 0.415 0.585 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.247 0.753 37 H 0.000 1.000 38 H 0.043 0.957 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.684 13.794 -10.912 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.207 4.207 3 C -0.061 4.061 4 O -0.060 6.060 5 C -0.150 4.150 6 C 0.379 3.621 7 O -0.447 6.447 8 N -0.346 5.346 9 C 0.023 3.977 10 H 0.075 0.925 11 C -0.145 4.145 12 C -0.160 4.160 13 C 0.010 3.990 14 N -0.333 5.333 15 C -0.397 4.397 16 H 0.088 0.912 17 C -0.246 4.246 18 N -0.578 5.578 19 Si 0.790 3.210 20 H -0.201 1.201 21 H -0.224 1.224 22 H -0.196 1.196 23 C 0.052 3.948 24 C -0.151 4.151 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.275 0.725 29 H 0.251 0.749 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.018 0.982 38 H 0.061 0.939 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.503 13.086 -10.778 19.435 hybrid contribution -0.301 -0.957 0.872 1.330 sum -9.804 12.129 -9.906 18.476 Atomic orbital electron populations 1.20257 0.86273 1.04029 1.03106 1.20848 0.99296 0.91385 1.09190 1.25199 0.78548 1.01744 1.00615 1.84042 1.30984 1.20311 1.70702 1.21682 0.95417 0.81452 1.16479 1.16966 0.82470 0.86261 0.76367 1.90882 1.86645 1.14529 1.52691 1.45818 1.04748 1.10991 1.73081 1.21659 0.83773 0.93727 0.98541 0.92484 1.21658 0.93323 0.98206 1.01295 1.21903 0.97510 0.99484 0.97088 1.21205 0.89506 0.95803 0.92532 1.44247 1.05289 1.18344 1.65459 1.19520 1.19520 0.91224 1.09409 0.91215 1.25822 1.01245 1.01351 0.96168 1.70171 1.33421 1.32790 1.21464 0.85347 0.76708 0.80710 0.78203 1.20125 1.22398 1.19562 1.20771 0.88517 0.93972 0.91576 1.22089 0.91061 1.01426 1.00506 0.90678 0.88836 0.91463 0.72517 0.74864 0.89477 0.90660 0.88178 0.92836 0.96010 0.92417 0.94381 0.98207 0.93854 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.39 71.23 0.74 -0.30 16 2 C -0.21 -4.19 6.14 -20.06 -0.12 -4.32 16 3 C 0.01 0.14 12.00 67.10 0.81 0.94 16 4 O -0.17 -4.12 10.40 -5.13 -0.05 -4.17 16 5 C -0.10 -3.17 7.13 24.07 0.17 -3.00 16 6 C 0.59 23.64 7.75 86.44 0.67 24.31 16 7 O -0.57 -28.04 16.53 -4.36 -0.07 -28.12 16 8 N -0.70 -24.80 5.08 -446.13 -2.26 -27.07 16 9 C 0.13 5.24 2.61 45.07 0.12 5.36 16 10 H 0.06 2.65 7.57 -2.39 -0.02 2.64 16 11 C -0.11 -3.25 5.35 30.62 0.16 -3.08 16 12 C -0.12 -3.79 6.08 30.67 0.19 -3.61 16 13 C 0.13 5.51 6.52 86.36 0.56 6.08 16 14 N -0.61 -32.18 2.99 -699.09 -2.09 -34.27 16 15 C -0.27 -15.56 9.58 84.03 0.81 -14.76 16 16 H 0.07 3.92 7.88 -2.92 -0.02 3.89 16 17 C -0.05 -3.02 4.92 84.86 0.42 -2.60 16 18 N -0.93 -59.22 11.20 21.65 0.24 -58.98 16 19 Si 0.96 48.27 29.59 68.60 2.03 50.30 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 22 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 23 C 0.18 9.29 4.88 86.36 0.42 9.71 16 24 C -0.13 -3.78 10.57 22.39 0.24 -3.54 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.26 1.46 8.06 -2.91 -0.02 1.44 16 29 H 0.41 11.69 8.36 -92.71 -0.77 10.92 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 36 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.04 2.70 6.06 -2.39 -0.01 2.68 16 39 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -79.20 326.53 3.24 -75.96 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.28 Total: 15.16 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.18 Total: 11.19 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -4.11 Total: -120.32 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.13 Total: -32.29 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -79.20 3.24 -75.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008238739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.941 kcal (2) G-P(sol) polarization free energy of solvation -79.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds