Wall clock time and date at job start Tue Mar 31 2020 00:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34179 * 125.44050 * 2 1 4 4 C 1.47016 * 105.95312 * 180.14262 * 3 2 1 5 5 C 1.47383 * 127.19110 * 179.83359 * 4 3 2 6 6 O 1.21610 * 120.00163 * 179.68396 * 5 4 3 7 7 N 1.34777 * 119.99919 * 359.68207 * 5 4 3 8 8 C 1.46495 * 120.00234 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.91616 * 31.09979 * 8 7 5 10 10 C 1.55157 * 111.00828 * 155.00372 * 8 7 5 11 11 C 1.54325 * 102.94374 * 153.57764 * 10 8 7 12 12 N 1.47015 * 107.27065 * 337.80787 * 11 10 8 13 13 C 1.36939 * 125.64582 * 178.91905 * 12 11 10 14 14 H 1.08008 * 119.99871 * 180.02562 * 13 12 11 15 15 C 1.38809 * 120.00149 * 0.02562 * 13 12 11 16 16 N 1.31616 * 119.99904 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00002 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47238 * 89.99988 * 17 15 13 19 19 H 1.48495 * 109.47303 * 209.99980 * 17 15 13 20 20 H 1.48500 * 109.47436 * 330.00011 * 17 15 13 21 21 C 1.47425 * 108.70882 * 358.94051 * 12 11 10 22 22 C 1.36413 * 105.61850 * 359.57263 * 4 3 2 23 23 C 1.50700 * 125.80188 * 180.26126 * 22 4 3 24 24 O 1.33657 * 108.39371 * 0.25793 * 22 4 3 25 25 H 1.09000 * 109.47284 * 180.31250 * 1 2 3 26 26 H 1.08996 * 109.47093 * 300.31480 * 1 2 3 27 27 H 1.09003 * 109.46889 * 60.31196 * 1 2 3 28 28 H 1.08003 * 127.02213 * 359.97438 * 3 2 1 29 29 H 0.97000 * 120.00256 * 0.02562 * 7 5 4 30 30 H 1.08996 * 110.71539 * 271.94075 * 10 8 7 31 31 H 1.08999 * 110.72004 * 35.03529 * 10 8 7 32 32 H 1.09000 * 109.88274 * 97.22627 * 11 10 8 33 33 H 1.08998 * 109.88226 * 218.38672 * 11 10 8 34 34 H 0.97001 * 120.00208 * 179.97438 * 16 15 13 35 35 H 1.08999 * 110.36633 * 265.29871 * 21 12 11 36 36 H 1.08996 * 110.37033 * 142.96251 * 21 12 11 37 37 H 1.09003 * 109.47242 * 89.99997 * 23 22 4 38 38 H 1.09001 * 109.46658 * 209.99855 * 23 22 4 39 39 H 1.08993 * 109.47466 * 330.00002 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2851 1.0932 0.0000 4 6 3.6710 0.6027 -0.0035 5 6 4.9025 1.4124 -0.0083 6 8 5.9892 0.8664 -0.0050 7 7 4.8244 2.7578 -0.0162 8 6 6.0485 3.5627 -0.0215 9 1 6.8524 3.0449 -0.5447 10 6 5.7918 4.9615 -0.6418 11 6 6.8706 5.8394 0.0268 12 7 7.2690 5.1682 1.2727 13 6 8.2210 5.6142 2.1502 14 1 8.4422 5.0459 3.0417 15 6 8.9015 6.7965 1.8942 16 7 8.6322 7.4888 0.8076 17 14 10.1996 7.4052 3.0916 18 1 11.5236 6.8511 2.7103 19 1 10.2537 8.8886 3.0512 20 1 9.8537 6.9597 4.4653 21 6 6.4743 3.9353 1.4206 22 6 3.5790 -0.7583 0.0045 23 6 4.7390 -1.7202 0.0102 24 8 2.2852 -1.0935 0.0065 25 1 -0.3634 -1.0276 0.0056 26 1 -0.3633 0.5187 0.8871 27 1 -0.3633 0.5090 -0.8928 28 1 1.9596 2.1230 -0.0004 29 1 3.9577 3.1934 -0.0185 30 1 5.9311 4.9355 -1.7225 31 1 4.7921 5.3167 -0.3917 32 1 7.7320 5.9359 -0.6341 33 1 6.4606 6.8241 0.2509 34 1 9.1076 8.3152 0.6288 35 1 5.5963 4.1219 2.0390 36 1 7.0828 3.1414 1.8536 37 1 5.0187 -1.9461 1.0393 38 1 4.4505 -2.6402 -0.4982 39 1 5.5868 -1.2702 -0.5062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010128278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:15 Heat of formation + Delta-G solvation = -2.682320 kcal Electronic energy + Delta-G solvation = -21303.548102 eV Core-core repulsion = 18020.387535 eV Total energy + Delta-G solvation = -3283.160567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -42.72362 -39.34797 -37.16221 -34.07766 -33.27144 -32.98209 -31.77730 -29.71288 -29.07726 -27.19661 -25.37284 -24.43640 -23.05172 -21.29284 -20.36059 -19.93327 -19.35896 -17.34993 -16.83762 -16.62301 -15.87021 -15.59420 -14.67048 -14.51494 -14.34873 -14.01170 -13.69674 -13.55359 -13.38230 -13.04787 -12.83371 -12.75683 -12.57586 -12.38961 -12.16555 -11.78700 -11.71583 -10.99565 -10.87705 -10.73670 -10.33908 -10.08406 -9.89124 -9.85380 -9.74336 -9.63429 -8.73851 -8.58182 -8.46419 -6.81614 -5.69222 -3.02664 1.31202 1.87373 2.55783 3.41397 3.43893 3.48327 3.50063 3.50656 4.28148 4.53387 4.66435 4.77948 4.96648 5.12989 5.13716 5.27847 5.33019 5.39958 5.43522 5.46791 5.57997 5.65743 5.77182 5.79943 5.83799 6.05509 6.18569 6.23491 6.35805 6.44828 6.63694 6.72832 6.91509 7.03237 7.56019 7.59959 7.77033 7.84938 8.26864 8.46464 9.24111 9.84003 10.49171 11.42732 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.003426 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.774293 B = 8170.329705 C = 8509.495964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.018 4.018 3 C -0.185 4.185 4 C -0.237 4.237 5 C 0.587 3.413 6 O -0.542 6.542 7 N -0.708 5.708 8 C 0.128 3.872 9 H 0.098 0.902 10 C -0.149 4.149 11 C 0.180 3.820 12 N -0.604 5.604 13 C -0.226 4.226 14 H 0.078 0.922 15 C -0.009 4.009 16 N -0.924 5.924 17 Si 0.913 3.087 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.129 3.871 22 C 0.073 3.927 23 C -0.081 4.081 24 O -0.177 6.177 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.397 0.603 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.252 0.748 35 H 0.019 0.981 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 -14.650 -4.102 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.205 4.205 4 C -0.241 4.241 5 C 0.374 3.626 6 O -0.422 6.422 7 N -0.358 5.358 8 C 0.023 3.977 9 H 0.116 0.884 10 C -0.188 4.188 11 C 0.055 3.945 12 N -0.331 5.331 13 C -0.355 4.355 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.572 5.572 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.002 3.998 22 C 0.020 3.980 23 C -0.137 4.137 24 O -0.074 6.074 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.174 0.826 29 H 0.231 0.769 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.869 -15.110 -4.077 22.288 hybrid contribution 0.190 0.911 0.627 1.122 sum -15.679 -14.199 -3.450 21.432 Atomic orbital electron populations 1.20325 0.84790 1.04036 1.03757 1.22199 0.93934 0.83756 1.06698 1.22586 0.90868 0.99529 1.07487 1.21226 0.93924 0.93325 1.15674 1.17192 0.87210 0.82066 0.76102 1.90757 1.28712 1.71827 1.50865 1.45792 1.09988 1.05502 1.74480 1.22326 0.86027 0.90747 0.98631 0.88421 1.23184 1.00894 0.94854 0.99905 1.21140 0.93261 0.93154 0.86979 1.44396 1.43181 1.21870 1.23655 1.19083 1.11296 1.04203 1.00874 0.90379 1.24801 1.00114 0.97579 0.98007 1.69947 1.44295 1.16798 1.26112 0.86091 0.81541 0.77792 0.80188 1.21564 1.21690 1.20695 1.21825 0.94594 0.90013 0.93369 1.22779 0.82759 0.94143 0.98329 1.20612 0.92181 0.96459 1.04457 1.83692 1.16263 1.35627 1.71822 0.90576 0.89536 0.89569 0.82625 0.76921 0.91614 0.92103 0.93213 0.93594 0.93756 0.96311 0.93875 0.89353 0.90636 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.40 36.01 0.37 -0.05 16 2 C -0.02 -0.18 7.28 -35.74 -0.26 -0.44 16 3 C -0.19 -2.04 10.48 -37.46 -0.39 -2.43 16 4 C -0.24 -3.27 6.31 -103.28 -0.65 -3.92 16 5 C 0.59 9.62 7.81 -12.54 -0.10 9.52 16 6 O -0.54 -10.47 14.49 5.27 0.08 -10.39 16 7 N -0.71 -10.97 5.19 -52.81 -0.27 -11.24 16 8 C 0.13 2.40 3.42 -65.78 -0.23 2.18 16 9 H 0.10 2.02 7.54 -51.93 -0.39 1.62 16 10 C -0.15 -2.75 6.60 -24.90 -0.16 -2.91 16 11 C 0.18 4.38 5.37 -3.07 -0.02 4.36 16 12 N -0.60 -15.91 3.39 -170.07 -0.58 -16.49 16 13 C -0.23 -6.49 10.28 -15.06 -0.15 -6.65 16 14 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -27.36 10.31 55.49 0.57 -26.78 16 17 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.13 2.87 6.93 -2.52 -0.02 2.85 16 22 C 0.07 0.92 7.37 -34.97 -0.26 0.66 16 23 C -0.08 -0.86 9.89 36.01 0.36 -0.50 16 24 O -0.18 -2.08 10.52 7.65 0.08 -2.00 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.16 1.33 7.74 -52.48 -0.41 0.93 16 29 H 0.40 5.03 7.74 -40.82 -0.32 4.71 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.99 8.00 -51.93 -0.42 0.58 16 32 H 0.05 1.34 7.38 -51.93 -0.38 0.95 16 33 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 1.35 6.48 -51.93 -0.34 1.01 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -33.56 326.08 -7.40 -40.96 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.57 Total: 1.25 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.60 Total: 2.32 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.28 Total: -54.52 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.16 Total: -12.39 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.56 -7.40 -40.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010128278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.276 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds