Wall clock time and date at job start Tue Mar 31 2020 00:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34179 * 125.44050 * 2 1 4 4 C 1.47016 * 105.95312 * 180.14262 * 3 2 1 5 5 C 1.47383 * 127.19110 * 179.83359 * 4 3 2 6 6 O 1.21610 * 120.00163 * 179.68396 * 5 4 3 7 7 N 1.34777 * 119.99919 * 359.68207 * 5 4 3 8 8 C 1.46495 * 120.00234 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.91616 * 31.09979 * 8 7 5 10 10 C 1.55157 * 111.00828 * 155.00372 * 8 7 5 11 11 C 1.54325 * 102.94374 * 153.57764 * 10 8 7 12 12 N 1.47015 * 107.27065 * 337.80787 * 11 10 8 13 13 C 1.36939 * 125.64582 * 178.91905 * 12 11 10 14 14 H 1.08008 * 119.99871 * 180.02562 * 13 12 11 15 15 C 1.38809 * 120.00149 * 0.02562 * 13 12 11 16 16 N 1.31616 * 119.99904 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00002 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47238 * 89.99988 * 17 15 13 19 19 H 1.48495 * 109.47303 * 209.99980 * 17 15 13 20 20 H 1.48500 * 109.47436 * 330.00011 * 17 15 13 21 21 C 1.47425 * 108.70882 * 358.94051 * 12 11 10 22 22 C 1.36413 * 105.61850 * 359.57263 * 4 3 2 23 23 C 1.50700 * 125.80188 * 180.26126 * 22 4 3 24 24 O 1.33657 * 108.39371 * 0.25793 * 22 4 3 25 25 H 1.09000 * 109.47284 * 180.31250 * 1 2 3 26 26 H 1.08996 * 109.47093 * 300.31480 * 1 2 3 27 27 H 1.09003 * 109.46889 * 60.31196 * 1 2 3 28 28 H 1.08003 * 127.02213 * 359.97438 * 3 2 1 29 29 H 0.97000 * 120.00256 * 0.02562 * 7 5 4 30 30 H 1.08996 * 110.71539 * 271.94075 * 10 8 7 31 31 H 1.08999 * 110.72004 * 35.03529 * 10 8 7 32 32 H 1.09000 * 109.88274 * 97.22627 * 11 10 8 33 33 H 1.08998 * 109.88226 * 218.38672 * 11 10 8 34 34 H 0.97001 * 120.00208 * 179.97438 * 16 15 13 35 35 H 1.08999 * 110.36633 * 265.29871 * 21 12 11 36 36 H 1.08996 * 110.37033 * 142.96251 * 21 12 11 37 37 H 1.09003 * 109.47242 * 89.99997 * 23 22 4 38 38 H 1.09001 * 109.46658 * 209.99855 * 23 22 4 39 39 H 1.08993 * 109.47466 * 330.00002 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2851 1.0932 0.0000 4 6 3.6710 0.6027 -0.0035 5 6 4.9025 1.4124 -0.0083 6 8 5.9892 0.8664 -0.0050 7 7 4.8244 2.7578 -0.0162 8 6 6.0485 3.5627 -0.0215 9 1 6.8524 3.0449 -0.5447 10 6 5.7918 4.9615 -0.6418 11 6 6.8706 5.8394 0.0268 12 7 7.2690 5.1682 1.2727 13 6 8.2210 5.6142 2.1502 14 1 8.4422 5.0459 3.0417 15 6 8.9015 6.7965 1.8942 16 7 8.6322 7.4888 0.8076 17 14 10.1996 7.4052 3.0916 18 1 11.5236 6.8511 2.7103 19 1 10.2537 8.8886 3.0512 20 1 9.8537 6.9597 4.4653 21 6 6.4743 3.9353 1.4206 22 6 3.5790 -0.7583 0.0045 23 6 4.7390 -1.7202 0.0102 24 8 2.2852 -1.0935 0.0065 25 1 -0.3634 -1.0276 0.0056 26 1 -0.3633 0.5187 0.8871 27 1 -0.3633 0.5090 -0.8928 28 1 1.9596 2.1230 -0.0004 29 1 3.9577 3.1934 -0.0185 30 1 5.9311 4.9355 -1.7225 31 1 4.7921 5.3167 -0.3917 32 1 7.7320 5.9359 -0.6341 33 1 6.4606 6.8241 0.2509 34 1 9.1076 8.3152 0.6288 35 1 5.5963 4.1219 2.0390 36 1 7.0828 3.1414 1.8536 37 1 5.0187 -1.9461 1.0393 38 1 4.4505 -2.6402 -0.4982 39 1 5.5868 -1.2702 -0.5062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010128278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:10 Heat of formation + Delta-G solvation = -25.026412 kcal Electronic energy + Delta-G solvation = -21304.517014 eV Core-core repulsion = 18020.387535 eV Total energy + Delta-G solvation = -3284.129479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 5.25 seconds Orbital eigenvalues (eV) -43.60167 -40.74126 -38.86819 -35.67662 -34.30338 -33.83743 -33.54274 -31.08672 -30.33500 -28.89397 -26.73202 -25.91176 -24.17868 -22.43214 -22.10431 -21.51818 -20.54350 -18.96566 -18.28079 -17.50550 -17.28345 -16.72568 -16.61874 -16.04840 -15.63173 -15.57665 -14.80200 -14.42142 -14.27253 -14.15617 -14.11123 -13.91373 -13.79907 -13.70883 -13.45259 -13.19889 -12.96974 -12.77106 -12.50535 -12.42344 -12.12967 -12.04090 -11.82801 -11.60257 -11.05271 -10.81184 -10.73186 -10.11855 -9.35113 -8.93606 -7.87461 -5.23957 0.30463 1.04021 1.45249 1.47740 1.56279 1.71550 2.15334 2.30072 2.50109 3.31095 3.49920 3.66217 3.67836 3.83039 3.94382 4.03695 4.18535 4.28192 4.46681 4.56389 4.57957 4.60496 4.69383 4.71267 4.78518 4.85003 4.92702 4.96072 5.03486 5.09809 5.24126 5.40746 5.44597 5.52424 5.62586 5.72053 6.05976 6.17093 6.56416 7.07836 7.21224 7.72924 8.36580 9.22651 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.003426 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.774293 B = 8170.329705 C = 8509.495964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.014 4.014 3 C -0.194 4.194 4 C -0.263 4.263 5 C 0.585 3.415 6 O -0.579 6.579 7 N -0.695 5.695 8 C 0.147 3.853 9 H 0.078 0.922 10 C -0.128 4.128 11 C 0.185 3.815 12 N -0.626 5.626 13 C -0.249 4.249 14 H 0.077 0.923 15 C -0.062 4.062 16 N -0.948 5.948 17 Si 0.981 3.019 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.270 1.270 21 C 0.129 3.871 22 C 0.067 3.933 23 C -0.081 4.081 24 O -0.180 6.180 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.180 0.820 29 H 0.414 0.586 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.015 0.985 33 H 0.018 0.982 34 H 0.249 0.751 35 H 0.030 0.970 36 H 0.025 0.975 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.999 -15.374 -4.023 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.213 4.213 4 C -0.268 4.268 5 C 0.375 3.625 6 O -0.461 6.461 7 N -0.346 5.346 8 C 0.040 3.960 9 H 0.096 0.904 10 C -0.166 4.166 11 C 0.060 3.940 12 N -0.353 5.353 13 C -0.378 4.378 14 H 0.095 0.905 15 C -0.255 4.255 16 N -0.597 5.597 17 Si 0.809 3.191 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.195 1.195 21 C 0.002 3.998 22 C 0.014 3.986 23 C -0.136 4.136 24 O -0.077 6.077 25 H 0.103 0.897 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.197 0.803 29 H 0.251 0.749 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.239 -15.852 -3.997 24.493 hybrid contribution 0.854 1.066 0.616 1.498 sum -17.385 -14.786 -3.382 23.071 Atomic orbital electron populations 1.20549 0.81621 1.05202 1.05409 1.23029 0.95568 0.82929 1.04682 1.22850 0.89348 1.01090 1.08041 1.21144 0.94065 0.93760 1.17790 1.17591 0.87698 0.82177 0.75061 1.90741 1.30387 1.72474 1.52466 1.45525 1.09584 1.05169 1.74292 1.21829 0.86955 0.91225 0.95948 0.90434 1.23000 1.00234 0.92803 1.00613 1.20937 0.93610 0.93314 0.86157 1.44681 1.43323 1.23358 1.23922 1.19434 1.12214 1.04615 1.01525 0.90466 1.25655 1.02252 0.97781 0.99851 1.70156 1.45108 1.16849 1.27565 0.85049 0.78659 0.76940 0.78485 1.21305 1.21559 1.19499 1.21920 0.94072 0.88066 0.95715 1.23074 0.83602 0.94241 0.97683 1.20621 0.91064 0.97064 1.04895 1.83723 1.15903 1.36465 1.71658 0.89694 0.87902 0.87709 0.80276 0.74860 0.89260 0.89044 0.96719 0.96345 0.94164 0.95209 0.95618 0.88763 0.88050 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.40 71.24 0.74 0.18 16 2 C -0.01 -0.24 7.28 24.76 0.18 -0.06 16 3 C -0.19 -3.77 10.48 23.65 0.25 -3.52 16 4 C -0.26 -6.93 6.31 -18.99 -0.12 -7.05 16 5 C 0.59 18.88 7.81 86.65 0.68 19.56 16 6 O -0.58 -22.75 14.49 -4.06 -0.06 -22.80 16 7 N -0.69 -20.52 5.19 -439.25 -2.28 -22.80 16 8 C 0.15 5.44 3.42 46.39 0.16 5.60 16 9 H 0.08 3.24 7.54 -2.39 -0.02 3.22 16 10 C -0.13 -4.52 6.60 31.78 0.21 -4.31 16 11 C 0.18 9.18 5.37 86.73 0.47 9.65 16 12 N -0.63 -33.66 3.39 -691.99 -2.35 -36.01 16 13 C -0.25 -14.59 10.28 84.03 0.86 -13.73 16 14 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 15 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 16 N -0.95 -57.53 10.31 21.65 0.22 -57.31 16 17 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 18 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 C 0.13 5.76 6.93 86.86 0.60 6.36 16 22 C 0.07 1.63 7.37 25.26 0.19 1.81 16 23 C -0.08 -1.65 9.89 71.24 0.70 -0.95 16 24 O -0.18 -3.87 10.52 4.47 0.05 -3.82 16 25 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.18 2.43 7.74 -2.91 -0.02 2.41 16 29 H 0.41 9.36 7.74 -92.71 -0.72 8.64 16 30 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.09 2.71 8.00 -2.39 -0.02 2.69 16 32 H 0.01 0.81 7.38 -2.39 -0.02 0.80 16 33 H 0.02 1.00 7.51 -2.39 -0.02 0.98 16 34 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 2.27 6.48 -2.39 -0.02 2.26 16 Total: -1.00 -74.98 326.08 3.33 -71.64 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.34 Total: 11.93 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.38 Total: 10.37 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -4.41 Total: -116.12 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.01 Total: -26.63 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -74.98 3.33 -71.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010128278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.615 kcal (2) G-P(sol) polarization free energy of solvation -74.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.25 seconds