Wall clock time and date at job start Tue Mar 31 2020 01:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35136 * 125.61348 * 2 1 4 4 C 1.40365 * 107.10981 * 180.02562 * 3 2 1 5 5 C 1.50707 * 126.64236 * 180.02562 * 4 3 2 6 6 C 1.36535 * 106.71224 * 359.97438 * 4 3 2 7 7 C 1.46662 * 125.98847 * 179.97438 * 6 4 3 8 8 O 1.21693 * 120.00012 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99943 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99823 * 180.02562 * 9 7 6 11 11 H 1.08992 * 110.78141 * 323.21146 * 10 9 7 12 12 C 1.55402 * 110.69614 * 199.81662 * 10 9 7 13 13 C 1.54912 * 101.66710 * 277.05274 * 12 10 9 14 14 N 1.47422 * 104.83277 * 323.07103 * 13 12 10 15 15 C 1.36938 * 125.65356 * 204.16946 * 14 13 12 16 16 H 1.07998 * 120.00117 * 161.47874 * 15 14 13 17 17 C 1.38813 * 119.99506 * 341.47432 * 15 14 13 18 18 N 1.31618 * 119.99951 * 157.61423 * 17 15 14 19 19 Si 1.86794 * 120.00222 * 337.61816 * 17 15 14 20 20 H 1.48507 * 109.47423 * 84.53407 * 19 17 15 21 21 H 1.48497 * 109.47192 * 204.53458 * 19 17 15 22 22 H 1.48505 * 109.47132 * 324.53466 * 19 17 15 23 23 C 1.47031 * 108.70183 * 24.12999 * 14 13 12 24 24 O 1.33932 * 125.61799 * 180.28174 * 2 1 3 25 25 H 1.09004 * 109.47239 * 90.00778 * 1 2 3 26 26 H 1.09004 * 109.47264 * 210.00789 * 1 2 3 27 27 H 1.08997 * 109.47617 * 330.00518 * 1 2 3 28 28 H 1.07991 * 126.44257 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.47162 * 269.95886 * 5 4 3 30 30 H 1.09003 * 109.46730 * 29.95549 * 5 4 3 31 31 H 1.08997 * 109.46696 * 149.95376 * 5 4 3 32 32 H 0.96998 * 120.00000 * 359.97438 * 9 7 6 33 33 H 1.09000 * 110.89391 * 158.97742 * 12 10 9 34 34 H 1.09002 * 111.03507 * 35.18398 * 12 10 9 35 35 H 1.08998 * 110.36339 * 204.23690 * 13 12 10 36 36 H 1.09001 * 110.46205 * 81.95945 * 13 12 10 37 37 H 0.96997 * 120.00534 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.88159 * 118.35686 * 23 14 13 39 39 H 1.08994 * 109.88220 * 239.36696 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 4.8617 1.5144 -0.0003 6 6 3.5823 -0.7115 -0.0004 7 6 4.7415 -1.6100 -0.0013 8 8 5.8680 -1.1498 -0.0029 9 7 4.5590 -2.9454 -0.0015 10 6 5.7169 -3.8429 -0.0019 11 1 6.5224 -3.4347 -0.6123 12 6 5.3131 -5.2602 -0.4948 13 6 4.7436 -5.8918 0.8000 14 7 5.6003 -5.3725 1.8816 15 6 5.8016 -5.9702 3.0971 16 1 6.6531 -5.6929 3.7008 17 6 4.9111 -6.9323 3.5533 18 7 5.2946 -7.8076 4.4584 19 14 3.1685 -6.9850 2.8825 20 1 3.1491 -7.7586 1.6150 21 1 2.2760 -7.6372 3.8741 22 1 2.6950 -5.6012 2.6252 23 6 6.2036 -4.1069 1.4387 24 8 2.2870 -1.0887 -0.0054 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5140 27 1 -0.3634 0.8900 0.5137 28 1 1.9612 2.1260 0.0004 29 1 5.1600 1.7221 -1.0278 30 1 4.6510 2.4524 0.5136 31 1 5.6683 0.9917 0.5137 32 1 3.6611 -3.3122 -0.0006 33 1 6.1843 -5.8118 -0.8482 34 1 4.5488 -5.2019 -1.2698 35 1 4.8096 -6.9787 0.7527 36 1 3.7099 -5.5814 0.9527 37 1 4.6725 -8.4802 4.7769 38 1 5.8844 -3.2953 2.0924 39 1 7.2903 -4.1891 1.4536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010486985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:04 Heat of formation + Delta-G solvation = 2.269037 kcal Electronic energy + Delta-G solvation = -21828.611076 eV Core-core repulsion = 18545.665216 eV Total energy + Delta-G solvation = -3282.945860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.82920 -39.62070 -37.55437 -34.50908 -33.73311 -32.65567 -31.96043 -29.68777 -28.32823 -28.09213 -26.90347 -24.27262 -22.14241 -21.56291 -20.93184 -19.89202 -19.72383 -18.17871 -16.89455 -16.62764 -16.10782 -15.37458 -15.21590 -14.60181 -14.39940 -14.15670 -13.68816 -13.41773 -13.37499 -13.19240 -13.07624 -13.01925 -12.76419 -12.49424 -12.24543 -11.74841 -11.67167 -11.51789 -11.16820 -11.05141 -10.96690 -10.19546 -10.03490 -9.97248 -9.76095 -9.45195 -8.98659 -8.69231 -8.48072 -7.04600 -5.94068 -3.24256 0.99195 2.18285 2.54484 3.20415 3.30197 3.32293 3.46061 3.48230 4.39430 4.54090 4.66526 4.73683 4.94213 4.99086 5.06472 5.12147 5.24190 5.28350 5.38371 5.40668 5.47876 5.55170 5.64164 5.70556 5.85616 5.96757 5.99509 6.04195 6.13944 6.24706 6.36994 6.53120 6.59020 6.65647 6.77299 6.89037 7.57809 7.72130 8.19143 8.31847 8.84183 9.69099 10.17233 11.22249 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020124 B = 0.005024 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.048133 B = 5572.436903 C = 6303.104703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.019 3.981 3 C -0.225 4.225 4 C -0.087 4.087 5 C -0.094 4.094 6 C -0.083 4.083 7 C 0.604 3.396 8 O -0.521 6.521 9 N -0.704 5.704 10 C 0.130 3.870 11 H 0.099 0.901 12 C -0.138 4.138 13 C 0.108 3.892 14 N -0.608 5.608 15 C -0.240 4.240 16 H 0.093 0.907 17 C 0.021 3.979 18 N -0.909 5.909 19 Si 0.883 3.117 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.278 1.278 23 C 0.126 3.874 24 O -0.161 6.161 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.404 0.596 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.023 0.977 37 H 0.263 0.737 38 H 0.035 0.965 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 16.396 -13.056 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 C -0.244 4.244 4 C -0.089 4.089 5 C -0.150 4.150 6 C -0.134 4.134 7 C 0.391 3.609 8 O -0.399 6.399 9 N -0.354 5.354 10 C 0.026 3.974 11 H 0.117 0.883 12 C -0.176 4.176 13 C -0.017 4.017 14 N -0.335 5.335 15 C -0.367 4.367 16 H 0.110 0.890 17 C -0.177 4.177 18 N -0.553 5.553 19 Si 0.713 3.287 20 H -0.212 1.212 21 H -0.230 1.230 22 H -0.204 1.204 23 C 0.000 4.000 24 O -0.058 6.058 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.172 0.828 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.238 0.762 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.714 16.207 -12.850 22.075 hybrid contribution -1.658 -0.134 -0.140 1.669 sum -9.372 16.073 -12.991 22.692 Atomic orbital electron populations 1.20408 0.84665 1.04565 1.03839 1.22753 0.94250 0.84153 1.02204 1.21443 0.91905 0.99659 1.11359 1.20591 0.96325 0.92161 0.99866 1.20419 0.93994 0.97857 1.02740 1.21925 0.81875 0.94224 1.15403 1.16480 0.85975 0.81537 0.76958 1.90830 1.21918 1.75914 1.51241 1.45933 1.10799 1.05147 1.73490 1.22132 0.87748 0.89309 0.98249 0.88268 1.23106 1.01904 0.94562 0.98073 1.21983 0.93823 0.98664 0.87238 1.44801 1.54359 1.21034 1.13307 1.18661 1.07484 1.17214 0.93357 0.88975 1.24991 0.98151 0.97321 0.97237 1.69839 1.35029 1.16910 1.33495 0.86974 0.87106 0.77409 0.77171 1.21229 1.23048 1.20426 1.21758 0.97064 0.89213 0.91969 1.84019 1.15990 1.34754 1.71012 0.89659 0.90056 0.88999 0.82840 0.90929 0.91618 0.89300 0.76175 0.89302 0.90937 0.91922 0.95974 0.92728 0.94657 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.41 36.00 0.37 -0.15 16 2 C 0.02 0.21 7.31 -35.41 -0.26 -0.05 16 3 C -0.22 -2.47 10.73 -39.89 -0.43 -2.90 16 4 C -0.09 -1.15 6.20 -104.43 -0.65 -1.80 16 5 C -0.09 -1.09 9.81 36.01 0.35 -0.74 16 6 C -0.08 -1.25 7.13 -36.80 -0.26 -1.51 16 7 C 0.60 10.04 7.78 -12.86 -0.10 9.94 16 8 O -0.52 -9.53 14.47 5.19 0.08 -9.45 16 9 N -0.70 -11.36 5.11 -53.21 -0.27 -11.63 16 10 C 0.13 2.18 3.27 -65.96 -0.22 1.97 16 11 H 0.10 1.56 7.70 -51.93 -0.40 1.16 16 12 C -0.14 -2.20 6.65 -24.45 -0.16 -2.36 16 13 C 0.11 2.29 4.68 -2.53 -0.01 2.28 16 14 N -0.61 -14.86 3.21 -170.07 -0.55 -15.40 16 15 C -0.24 -6.93 10.57 -15.06 -0.16 -7.09 16 16 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 17 C 0.02 0.63 5.43 -17.43 -0.09 0.53 16 18 N -0.91 -28.30 13.97 55.49 0.78 -27.53 16 19 Si 0.88 22.65 24.27 -169.99 -4.13 18.52 16 20 H -0.29 -6.95 6.49 56.52 0.37 -6.58 16 21 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.28 -7.05 6.66 56.52 0.38 -6.67 16 23 C 0.13 2.63 6.97 -3.06 -0.02 2.61 16 24 O -0.16 -2.26 10.40 4.99 0.05 -2.20 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.21 6.45 -51.93 -0.33 0.88 16 32 H 0.40 6.15 8.37 -40.82 -0.34 5.81 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.42 6.64 -51.93 -0.34 1.07 16 36 H 0.02 0.49 5.57 -51.93 -0.29 0.20 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 38 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -33.68 320.95 -6.39 -40.07 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.55 Total: 2.05 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.63 Total: 0.74 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.04 Total: -54.56 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.13 Total: -11.66 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.13 Total: 18.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.68 -6.39 -40.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010486985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.340 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds