Wall clock time and date at job start Tue Mar 31 2020 01:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35136 * 125.61348 * 2 1 4 4 C 1.40365 * 107.10981 * 180.02562 * 3 2 1 5 5 C 1.50707 * 126.64236 * 180.02562 * 4 3 2 6 6 C 1.36535 * 106.71224 * 359.97438 * 4 3 2 7 7 C 1.46662 * 125.98847 * 179.97438 * 6 4 3 8 8 O 1.21693 * 120.00012 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99943 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99823 * 180.02562 * 9 7 6 11 11 H 1.08992 * 110.78141 * 323.21146 * 10 9 7 12 12 C 1.55402 * 110.69614 * 199.81662 * 10 9 7 13 13 C 1.54912 * 101.66710 * 277.05274 * 12 10 9 14 14 N 1.47422 * 104.83277 * 323.07103 * 13 12 10 15 15 C 1.36938 * 125.65356 * 204.16946 * 14 13 12 16 16 H 1.07998 * 120.00117 * 161.47874 * 15 14 13 17 17 C 1.38813 * 119.99506 * 341.47432 * 15 14 13 18 18 N 1.31618 * 119.99951 * 157.61423 * 17 15 14 19 19 Si 1.86794 * 120.00222 * 337.61816 * 17 15 14 20 20 H 1.48507 * 109.47423 * 84.53407 * 19 17 15 21 21 H 1.48497 * 109.47192 * 204.53458 * 19 17 15 22 22 H 1.48505 * 109.47132 * 324.53466 * 19 17 15 23 23 C 1.47031 * 108.70183 * 24.12999 * 14 13 12 24 24 O 1.33932 * 125.61799 * 180.28174 * 2 1 3 25 25 H 1.09004 * 109.47239 * 90.00778 * 1 2 3 26 26 H 1.09004 * 109.47264 * 210.00789 * 1 2 3 27 27 H 1.08997 * 109.47617 * 330.00518 * 1 2 3 28 28 H 1.07991 * 126.44257 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.47162 * 269.95886 * 5 4 3 30 30 H 1.09003 * 109.46730 * 29.95549 * 5 4 3 31 31 H 1.08997 * 109.46696 * 149.95376 * 5 4 3 32 32 H 0.96998 * 120.00000 * 359.97438 * 9 7 6 33 33 H 1.09000 * 110.89391 * 158.97742 * 12 10 9 34 34 H 1.09002 * 111.03507 * 35.18398 * 12 10 9 35 35 H 1.08998 * 110.36339 * 204.23690 * 13 12 10 36 36 H 1.09001 * 110.46205 * 81.95945 * 13 12 10 37 37 H 0.96997 * 120.00534 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.88159 * 118.35686 * 23 14 13 39 39 H 1.08994 * 109.88220 * 239.36696 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 4.8617 1.5144 -0.0003 6 6 3.5823 -0.7115 -0.0004 7 6 4.7415 -1.6100 -0.0013 8 8 5.8680 -1.1498 -0.0029 9 7 4.5590 -2.9454 -0.0015 10 6 5.7169 -3.8429 -0.0019 11 1 6.5224 -3.4347 -0.6123 12 6 5.3131 -5.2602 -0.4948 13 6 4.7436 -5.8918 0.8000 14 7 5.6003 -5.3725 1.8816 15 6 5.8016 -5.9702 3.0971 16 1 6.6531 -5.6929 3.7008 17 6 4.9111 -6.9323 3.5533 18 7 5.2946 -7.8076 4.4584 19 14 3.1685 -6.9850 2.8825 20 1 3.1491 -7.7586 1.6150 21 1 2.2760 -7.6372 3.8741 22 1 2.6950 -5.6012 2.6252 23 6 6.2036 -4.1069 1.4387 24 8 2.2870 -1.0887 -0.0054 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5140 27 1 -0.3634 0.8900 0.5137 28 1 1.9612 2.1260 0.0004 29 1 5.1600 1.7221 -1.0278 30 1 4.6510 2.4524 0.5136 31 1 5.6683 0.9917 0.5137 32 1 3.6611 -3.3122 -0.0006 33 1 6.1843 -5.8118 -0.8482 34 1 4.5488 -5.2019 -1.2698 35 1 4.8096 -6.9787 0.7527 36 1 3.7099 -5.5814 0.9527 37 1 4.6725 -8.4802 4.7769 38 1 5.8844 -3.2953 2.0924 39 1 7.2903 -4.1891 1.4536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010486985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:03 Heat of formation + Delta-G solvation = -21.864446 kcal Electronic energy + Delta-G solvation = -21829.657582 eV Core-core repulsion = 18545.665216 eV Total energy + Delta-G solvation = -3283.992366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.76820 -40.95522 -39.09715 -35.80600 -35.02163 -34.01363 -33.32393 -31.40284 -29.84599 -28.90801 -28.04626 -26.16212 -23.29839 -22.70922 -22.45411 -21.39148 -20.75524 -19.36772 -18.84576 -17.62936 -17.48782 -17.22163 -16.32240 -15.94599 -15.92552 -15.42787 -15.22819 -14.84790 -14.56479 -14.10117 -14.05469 -13.97696 -13.71376 -13.63452 -13.45895 -13.29717 -13.25764 -13.01660 -12.74149 -12.58925 -12.41733 -12.06245 -11.87200 -11.48137 -11.22151 -10.85096 -10.66720 -10.31522 -9.44334 -9.10305 -8.20892 -5.48536 -0.03656 1.26719 1.30422 1.36686 1.45643 1.58460 2.02632 2.14651 2.38318 3.01256 3.26919 3.52482 3.60628 3.76881 3.80777 3.84361 4.14079 4.35978 4.43595 4.47110 4.49817 4.56159 4.69930 4.71103 4.74668 4.76717 4.83464 4.89643 4.92474 4.96820 5.13037 5.14676 5.24535 5.39362 5.52061 5.62967 5.85580 6.06289 6.37896 6.71790 6.96062 7.49323 8.04817 8.99195 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020124 B = 0.005024 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.048133 B = 5572.436903 C = 6303.104703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.025 3.975 3 C -0.230 4.230 4 C -0.086 4.086 5 C -0.093 4.093 6 C -0.124 4.124 7 C 0.602 3.398 8 O -0.547 6.547 9 N -0.702 5.702 10 C 0.143 3.857 11 H 0.116 0.884 12 C -0.117 4.117 13 C 0.098 3.902 14 N -0.624 5.624 15 C -0.241 4.241 16 H 0.053 0.947 17 C -0.036 4.036 18 N -0.956 5.956 19 Si 0.951 3.049 20 H -0.260 1.260 21 H -0.308 1.308 22 H -0.273 1.273 23 C 0.124 3.876 24 O -0.177 6.177 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.186 0.814 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.409 0.591 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.049 0.951 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.013 0.987 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.046 18.008 -15.618 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.028 4.028 3 C -0.249 4.249 4 C -0.089 4.089 5 C -0.149 4.149 6 C -0.175 4.175 7 C 0.390 3.610 8 O -0.428 6.428 9 N -0.352 5.352 10 C 0.038 3.962 11 H 0.134 0.866 12 C -0.156 4.156 13 C -0.026 4.026 14 N -0.351 5.351 15 C -0.370 4.370 16 H 0.071 0.929 17 C -0.230 4.230 18 N -0.603 5.603 19 Si 0.779 3.221 20 H -0.185 1.185 21 H -0.236 1.236 22 H -0.199 1.199 23 C -0.002 4.002 24 O -0.074 6.074 25 H 0.124 0.876 26 H 0.100 0.900 27 H 0.135 0.865 28 H 0.203 0.797 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.244 0.756 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.330 17.838 -15.458 25.765 hybrid contribution -0.822 -0.518 0.704 1.200 sum -11.152 17.320 -14.754 25.339 Atomic orbital electron populations 1.20671 0.81472 1.05806 1.05489 1.23712 0.95953 0.83501 0.99598 1.21819 0.90599 1.01262 1.11227 1.21008 0.97946 0.91835 0.98145 1.20441 0.92753 0.98356 1.03355 1.21690 0.82113 0.94576 1.19132 1.16721 0.86331 0.81718 0.76184 1.90804 1.23109 1.76369 1.52500 1.45879 1.10747 1.05061 1.73539 1.21972 0.88617 0.90315 0.95254 0.86634 1.23070 1.03409 0.92866 0.96211 1.22150 0.93583 0.98225 0.88638 1.44869 1.55008 1.22440 1.12794 1.18573 1.06347 1.17079 0.94968 0.92882 1.25661 1.02048 0.97051 0.98265 1.69972 1.36354 1.18090 1.35883 0.85881 0.81127 0.77763 0.77344 1.18510 1.23611 1.19856 1.21862 0.96818 0.87098 0.94463 1.83997 1.15718 1.36079 1.71573 0.87621 0.90021 0.86514 0.79683 0.89909 0.89152 0.91779 0.75569 0.87689 0.87026 0.93233 0.95771 0.92744 0.96899 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.41 71.24 0.74 -0.02 16 2 C 0.02 0.48 7.31 24.97 0.18 0.66 16 3 C -0.23 -4.38 10.73 22.07 0.24 -4.15 16 4 C -0.09 -2.17 6.20 -19.74 -0.12 -2.29 16 5 C -0.09 -2.05 9.81 71.24 0.70 -1.35 16 6 C -0.12 -3.65 7.13 24.07 0.17 -3.47 16 7 C 0.60 19.82 7.78 86.44 0.67 20.50 16 8 O -0.55 -20.19 14.47 -4.33 -0.06 -20.25 16 9 N -0.70 -21.79 5.11 -440.48 -2.25 -24.04 16 10 C 0.14 4.59 3.27 46.27 0.15 4.74 16 11 H 0.12 3.41 7.70 -2.39 -0.02 3.39 16 12 C -0.12 -3.37 6.65 32.07 0.21 -3.16 16 13 C 0.10 3.99 4.68 86.86 0.41 4.39 16 14 N -0.62 -30.72 3.21 -691.97 -2.22 -32.94 16 15 C -0.24 -14.41 10.57 84.03 0.89 -13.52 16 16 H 0.05 3.48 8.06 -2.91 -0.02 3.46 16 17 C -0.04 -2.15 5.43 84.86 0.46 -1.69 16 18 N -0.96 -61.45 13.97 21.65 0.30 -61.15 16 19 Si 0.95 47.03 24.27 68.60 1.66 48.69 16 20 H -0.26 -11.70 6.49 99.48 0.65 -11.06 16 21 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 22 H -0.27 -13.12 6.66 99.48 0.66 -12.46 16 23 C 0.12 5.21 6.97 86.73 0.60 5.82 16 24 O -0.18 -4.66 10.40 -5.05 -0.05 -4.71 16 25 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.19 2.19 8.06 -2.92 -0.02 2.17 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.76 6.45 -2.39 -0.02 1.74 16 32 H 0.41 11.72 8.37 -92.71 -0.78 10.95 16 33 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.05 2.14 6.64 -2.39 -0.02 2.13 16 36 H 0.02 1.00 5.57 -2.39 -0.01 0.99 16 37 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 38 H 0.01 0.60 8.04 -2.39 -0.02 0.58 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -76.39 320.95 2.87 -73.52 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.18 Total: 14.42 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.31 Total: 6.45 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -4.17 Total: -118.12 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.12 Total: -24.96 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.66 Total: 48.69 kcal Total: -76.39 2.87 -73.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010486985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.654 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds