Wall clock time and date at job start Tue Mar 31 2020 01:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35130 * 125.61585 * 2 1 4 4 C 1.40356 * 107.11686 * 179.90867 * 3 2 1 5 5 C 1.50703 * 126.64839 * 180.13574 * 4 3 2 6 6 C 1.36549 * 106.70903 * 0.35381 * 4 3 2 7 7 C 1.46658 * 125.99034 * 179.76488 * 6 4 3 8 8 O 1.21694 * 120.00092 * 359.97438 * 7 6 4 9 9 N 1.34775 * 119.99529 * 179.97438 * 7 6 4 10 10 C 1.46505 * 119.99512 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.88588 * 31.12386 * 10 9 7 12 12 C 1.55155 * 111.00108 * 155.00089 * 10 9 7 13 13 C 1.54327 * 102.94217 * 153.58111 * 12 10 9 14 14 N 1.47028 * 107.26852 * 337.80451 * 13 12 10 15 15 C 1.36937 * 125.64708 * 178.96011 * 14 13 12 16 16 H 1.07996 * 119.99856 * 179.97438 * 15 14 13 17 17 C 1.38815 * 119.99840 * 359.97438 * 15 14 13 18 18 N 1.31617 * 120.00382 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99644 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47115 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46884 * 119.99599 * 19 17 15 22 22 H 1.48494 * 109.47040 * 239.99491 * 19 17 15 23 23 C 1.47426 * 108.70279 * 358.94323 * 14 13 12 24 24 O 1.33928 * 125.61654 * 180.31365 * 2 1 3 25 25 H 1.09002 * 109.47152 * 179.71455 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.71555 * 1 2 3 27 27 H 1.09004 * 109.47113 * 299.71536 * 1 2 3 28 28 H 1.08001 * 126.44280 * 0.02562 * 3 2 1 29 29 H 1.08994 * 109.47236 * 270.25688 * 5 4 3 30 30 H 1.08996 * 109.47262 * 30.26320 * 5 4 3 31 31 H 1.09006 * 109.47069 * 150.25533 * 5 4 3 32 32 H 0.96999 * 120.00528 * 359.97438 * 9 7 6 33 33 H 1.09006 * 110.72099 * 271.93813 * 12 10 9 34 34 H 1.08999 * 110.72504 * 35.03711 * 12 10 9 35 35 H 1.08998 * 109.88310 * 97.22298 * 13 12 10 36 36 H 1.08999 * 109.87823 * 218.39197 * 13 12 10 37 37 H 0.96997 * 120.00520 * 179.97438 * 18 17 15 38 38 H 1.08997 * 110.36517 * 265.29072 * 23 14 13 39 39 H 1.08997 * 110.36583 * 142.96286 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6532 0.0021 5 6 4.8617 1.5144 0.0058 6 6 3.5824 -0.7116 -0.0047 7 6 4.7415 -1.6101 -0.0102 8 8 5.8681 -1.1499 -0.0093 9 7 4.5590 -2.9454 -0.0163 10 6 5.7169 -3.8429 -0.0224 11 1 6.5589 -3.3944 0.5048 12 6 5.3531 -5.2240 0.5837 13 6 6.3595 -6.1759 -0.0965 14 7 6.8070 -5.5245 -1.3363 15 6 7.7195 -6.0340 -2.2211 16 1 7.9823 -5.4755 -3.1073 17 6 8.3067 -7.2683 -1.9789 18 7 7.9868 -7.9487 -0.8986 19 14 9.5510 -7.9636 -3.1863 20 1 9.7348 -7.0115 -4.3109 21 1 10.8490 -8.1705 -2.4952 22 1 9.0580 -9.2616 -3.7127 23 6 6.1102 -4.2320 -1.4693 24 8 2.2870 -1.0887 -0.0060 25 1 -0.3633 -1.0277 -0.0051 26 1 -0.3633 0.5183 -0.8874 27 1 -0.3633 0.5094 0.8926 28 1 1.9613 2.1260 0.0004 29 1 5.1593 1.7272 -1.0209 30 1 4.6516 2.4497 0.5245 31 1 5.6687 0.9891 0.5167 32 1 3.6610 -3.3122 -0.0167 33 1 5.4956 -5.2206 1.6644 34 1 4.3285 -5.4979 0.3322 35 1 7.2117 -6.3461 0.5613 36 1 5.8738 -7.1234 -0.3301 37 1 8.3968 -8.8113 -0.7295 38 1 5.2195 -4.3432 -2.0876 39 1 6.7779 -3.4832 -1.8953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010486987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:09 Heat of formation + Delta-G solvation = -1.542374 kcal Electronic energy + Delta-G solvation = -21364.764739 eV Core-core repulsion = 18081.653604 eV Total energy + Delta-G solvation = -3283.111135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.84597 -39.44101 -37.23827 -34.54399 -33.77543 -32.67028 -31.82661 -29.23990 -28.10998 -27.90049 -26.45948 -24.41010 -21.95441 -21.53623 -20.38217 -20.03958 -19.59931 -18.09017 -16.87234 -16.63444 -15.97611 -15.33426 -14.66829 -14.55837 -14.22596 -14.08770 -13.76416 -13.39018 -13.32907 -13.09385 -12.85428 -12.73647 -12.49634 -12.41278 -12.21146 -11.82630 -11.73675 -11.02518 -10.90723 -10.76714 -10.39839 -10.07072 -9.91341 -9.88865 -9.77291 -9.68966 -8.88279 -8.60073 -8.46705 -6.83247 -5.70442 -3.04040 0.98432 2.16612 2.52699 3.24742 3.32688 3.42178 3.47889 3.50410 4.37391 4.52430 4.65321 4.76908 5.01351 5.08205 5.22634 5.27344 5.36560 5.44023 5.46244 5.59863 5.66382 5.70100 5.75011 5.79581 5.95733 6.04465 6.17532 6.30123 6.36137 6.42492 6.56487 6.67236 6.76206 6.97724 7.54430 7.58479 7.65799 7.82583 8.22770 8.27782 9.22746 9.82525 10.47393 11.41554 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033316 B = 0.003484 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.243949 B = 8035.652073 C = 8383.438084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.016 3.984 3 C -0.224 4.224 4 C -0.088 4.088 5 C -0.095 4.095 6 C -0.081 4.081 7 C 0.600 3.400 8 O -0.518 6.518 9 N -0.705 5.705 10 C 0.126 3.874 11 H 0.100 0.900 12 C -0.149 4.149 13 C 0.179 3.821 14 N -0.604 5.604 15 C -0.226 4.226 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.129 3.871 24 O -0.162 6.162 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.402 0.598 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.252 0.748 38 H 0.020 0.980 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.579 16.376 4.263 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 C -0.243 4.243 4 C -0.090 4.090 5 C -0.151 4.151 6 C -0.133 4.133 7 C 0.386 3.614 8 O -0.396 6.396 9 N -0.354 5.354 10 C 0.021 3.979 11 H 0.118 0.882 12 C -0.188 4.188 13 C 0.054 3.946 14 N -0.331 5.331 15 C -0.354 4.354 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.002 3.998 24 O -0.058 6.058 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.171 0.829 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.236 0.764 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.699 16.168 4.238 22.258 hybrid contribution 0.096 -0.465 -0.623 0.783 sum -14.603 15.702 3.615 21.746 Atomic orbital electron populations 1.20399 0.84667 1.04466 1.03857 1.22731 0.94214 0.84177 1.02498 1.21429 0.91924 0.99709 1.11257 1.20608 0.96308 0.92242 0.99890 1.20425 0.93965 0.97780 1.02934 1.21988 0.81814 0.94275 1.15235 1.16536 0.85915 0.81732 0.77204 1.90856 1.21940 1.75851 1.50920 1.45941 1.10735 1.05204 1.73550 1.22408 0.87534 0.89013 0.98935 0.88187 1.23197 1.00788 0.94821 1.00033 1.21153 0.93852 0.92556 0.86994 1.44405 1.48111 1.16576 1.23995 1.19129 1.14650 1.00743 1.00919 0.90287 1.24808 1.00372 0.97281 0.98039 1.69954 1.46169 1.14469 1.26509 0.86014 0.80809 0.78720 0.80064 1.20471 1.21714 1.21772 1.21824 0.95584 0.89292 0.93131 1.84009 1.15997 1.34732 1.71067 0.90206 0.89288 0.89314 0.82879 0.90796 0.91668 0.89338 0.76390 0.91498 0.91978 0.93131 0.93519 0.93782 0.96205 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.41 36.01 0.37 -0.06 16 2 C 0.02 0.16 7.31 -35.41 -0.26 -0.10 16 3 C -0.22 -2.31 10.73 -39.89 -0.43 -2.74 16 4 C -0.09 -1.13 6.20 -104.43 -0.65 -1.78 16 5 C -0.09 -1.10 9.82 36.01 0.35 -0.75 16 6 C -0.08 -1.17 7.13 -36.79 -0.26 -1.43 16 7 C 0.60 9.93 7.79 -12.86 -0.10 9.83 16 8 O -0.52 -9.94 14.38 5.19 0.07 -9.86 16 9 N -0.70 -11.09 5.19 -53.04 -0.28 -11.36 16 10 C 0.13 2.35 3.42 -65.78 -0.23 2.13 16 11 H 0.10 2.02 7.54 -51.93 -0.39 1.63 16 12 C -0.15 -2.75 6.60 -24.90 -0.16 -2.91 16 13 C 0.18 4.36 5.37 -3.06 -0.02 4.34 16 14 N -0.60 -15.84 3.39 -170.07 -0.58 -16.42 16 15 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 16 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -27.27 10.31 55.49 0.57 -26.70 16 19 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 C 0.13 2.84 6.93 -2.53 -0.02 2.83 16 24 O -0.16 -2.05 10.40 5.00 0.05 -1.99 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.20 6.45 -51.93 -0.33 0.87 16 32 H 0.40 5.39 8.32 -40.82 -0.34 5.05 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.02 8.00 -51.93 -0.42 0.61 16 35 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 36 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -32.81 326.54 -7.50 -40.31 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.61 Total: 1.30 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.64 Total: 2.39 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.28 Total: -54.48 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.13 Total: -11.86 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.81 -7.50 -40.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010486987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.773 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds