Wall clock time and date at job start Tue Mar 31 2020 01:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35130 * 125.61585 * 2 1 4 4 C 1.40356 * 107.11686 * 179.90867 * 3 2 1 5 5 C 1.50703 * 126.64839 * 180.13574 * 4 3 2 6 6 C 1.36549 * 106.70903 * 0.35381 * 4 3 2 7 7 C 1.46658 * 125.99034 * 179.76488 * 6 4 3 8 8 O 1.21694 * 120.00092 * 359.97438 * 7 6 4 9 9 N 1.34775 * 119.99529 * 179.97438 * 7 6 4 10 10 C 1.46505 * 119.99512 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.88588 * 31.12386 * 10 9 7 12 12 C 1.55155 * 111.00108 * 155.00089 * 10 9 7 13 13 C 1.54327 * 102.94217 * 153.58111 * 12 10 9 14 14 N 1.47028 * 107.26852 * 337.80451 * 13 12 10 15 15 C 1.36937 * 125.64708 * 178.96011 * 14 13 12 16 16 H 1.07996 * 119.99856 * 179.97438 * 15 14 13 17 17 C 1.38815 * 119.99840 * 359.97438 * 15 14 13 18 18 N 1.31617 * 120.00382 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99644 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47115 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46884 * 119.99599 * 19 17 15 22 22 H 1.48494 * 109.47040 * 239.99491 * 19 17 15 23 23 C 1.47426 * 108.70279 * 358.94323 * 14 13 12 24 24 O 1.33928 * 125.61654 * 180.31365 * 2 1 3 25 25 H 1.09002 * 109.47152 * 179.71455 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.71555 * 1 2 3 27 27 H 1.09004 * 109.47113 * 299.71536 * 1 2 3 28 28 H 1.08001 * 126.44280 * 0.02562 * 3 2 1 29 29 H 1.08994 * 109.47236 * 270.25688 * 5 4 3 30 30 H 1.08996 * 109.47262 * 30.26320 * 5 4 3 31 31 H 1.09006 * 109.47069 * 150.25533 * 5 4 3 32 32 H 0.96999 * 120.00528 * 359.97438 * 9 7 6 33 33 H 1.09006 * 110.72099 * 271.93813 * 12 10 9 34 34 H 1.08999 * 110.72504 * 35.03711 * 12 10 9 35 35 H 1.08998 * 109.88310 * 97.22298 * 13 12 10 36 36 H 1.08999 * 109.87823 * 218.39197 * 13 12 10 37 37 H 0.96997 * 120.00520 * 179.97438 * 18 17 15 38 38 H 1.08997 * 110.36517 * 265.29072 * 23 14 13 39 39 H 1.08997 * 110.36583 * 142.96286 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6532 0.0021 5 6 4.8617 1.5144 0.0058 6 6 3.5824 -0.7116 -0.0047 7 6 4.7415 -1.6101 -0.0102 8 8 5.8681 -1.1499 -0.0093 9 7 4.5590 -2.9454 -0.0163 10 6 5.7169 -3.8429 -0.0224 11 1 6.5589 -3.3944 0.5048 12 6 5.3531 -5.2240 0.5837 13 6 6.3595 -6.1759 -0.0965 14 7 6.8070 -5.5245 -1.3363 15 6 7.7195 -6.0340 -2.2211 16 1 7.9823 -5.4755 -3.1073 17 6 8.3067 -7.2683 -1.9789 18 7 7.9868 -7.9487 -0.8986 19 14 9.5510 -7.9636 -3.1863 20 1 9.7348 -7.0115 -4.3109 21 1 10.8490 -8.1705 -2.4952 22 1 9.0580 -9.2616 -3.7127 23 6 6.1102 -4.2320 -1.4693 24 8 2.2870 -1.0887 -0.0060 25 1 -0.3633 -1.0277 -0.0051 26 1 -0.3633 0.5183 -0.8874 27 1 -0.3633 0.5094 0.8926 28 1 1.9613 2.1260 0.0004 29 1 5.1593 1.7272 -1.0209 30 1 4.6516 2.4497 0.5245 31 1 5.6687 0.9891 0.5167 32 1 3.6610 -3.3122 -0.0167 33 1 5.4956 -5.2206 1.6644 34 1 4.3285 -5.4979 0.3322 35 1 7.2117 -6.3461 0.5613 36 1 5.8738 -7.1234 -0.3301 37 1 8.3968 -8.8113 -0.7295 38 1 5.2195 -4.3432 -2.0876 39 1 6.7779 -3.4832 -1.8953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010486987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:08 Heat of formation + Delta-G solvation = -23.384917 kcal Electronic energy + Delta-G solvation = -21365.711903 eV Core-core repulsion = 18081.653604 eV Total energy + Delta-G solvation = -3284.058299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.74174 -40.82082 -38.93456 -35.89048 -35.00979 -33.87105 -33.23939 -31.09931 -29.36903 -28.88802 -27.82321 -26.32312 -23.17736 -22.43728 -22.10792 -21.68752 -20.67062 -19.33413 -18.78915 -17.60498 -17.45046 -16.71557 -16.29466 -16.07206 -15.63371 -15.51784 -14.87412 -14.41575 -14.22881 -14.12060 -14.04915 -13.93005 -13.74799 -13.66080 -13.59841 -13.22702 -12.97551 -12.80949 -12.58601 -12.46532 -12.16555 -12.00620 -11.84733 -11.63228 -11.22548 -10.74731 -10.64667 -10.27595 -9.41493 -8.94926 -7.88251 -5.24921 -0.01791 1.32835 1.45193 1.46584 1.56486 1.58435 2.04835 2.11268 2.49108 3.30461 3.55331 3.62632 3.74152 3.78675 3.93135 3.99798 4.15182 4.46750 4.49872 4.53263 4.58258 4.66271 4.73626 4.75146 4.76879 4.82770 4.91424 4.97983 4.99683 5.17208 5.27672 5.37914 5.41913 5.53283 5.60556 5.70650 5.88099 6.15963 6.43750 7.00022 7.07175 7.71580 8.35270 9.22098 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033316 B = 0.003484 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.243949 B = 8035.652073 C = 8383.438084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.029 3.971 3 C -0.232 4.232 4 C -0.087 4.087 5 C -0.095 4.095 6 C -0.120 4.120 7 C 0.600 3.400 8 O -0.554 6.554 9 N -0.695 5.695 10 C 0.145 3.855 11 H 0.083 0.917 12 C -0.129 4.129 13 C 0.185 3.815 14 N -0.626 5.626 15 C -0.248 4.248 16 H 0.078 0.922 17 C -0.062 4.062 18 N -0.948 5.948 19 Si 0.981 3.019 20 H -0.268 1.268 21 H -0.290 1.290 22 H -0.288 1.288 23 C 0.129 3.871 24 O -0.171 6.171 25 H 0.084 0.916 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.185 0.815 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.415 0.585 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.249 0.751 38 H 0.029 0.971 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.983 18.009 4.221 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.023 4.023 3 C -0.251 4.251 4 C -0.090 4.090 5 C -0.151 4.151 6 C -0.171 4.171 7 C 0.388 3.612 8 O -0.435 6.435 9 N -0.345 5.345 10 C 0.039 3.961 11 H 0.101 0.899 12 C -0.167 4.167 13 C 0.060 3.940 14 N -0.353 5.353 15 C -0.377 4.377 16 H 0.096 0.904 17 C -0.256 4.256 18 N -0.597 5.597 19 Si 0.809 3.191 20 H -0.193 1.193 21 H -0.217 1.217 22 H -0.215 1.215 23 C 0.002 3.998 24 O -0.068 6.068 25 H 0.103 0.897 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.202 0.798 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.252 0.748 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -17.148 17.822 4.195 25.085 hybrid contribution 0.732 -0.864 -0.622 1.292 sum -16.416 16.958 3.573 23.871 Atomic orbital electron populations 1.20679 0.81241 1.05524 1.05918 1.23713 0.95949 0.83390 0.99291 1.21782 0.90477 1.01394 1.11402 1.20992 0.97903 0.91926 0.98225 1.20439 0.92996 0.98574 1.03088 1.21518 0.82044 0.94272 1.19245 1.16816 0.86347 0.81846 0.76176 1.90833 1.23633 1.76458 1.52530 1.45688 1.10394 1.04812 1.73610 1.21917 0.88257 0.89622 0.96268 0.89856 1.23015 1.00374 0.92564 1.00776 1.20941 0.93777 0.93038 0.86234 1.44686 1.48177 1.18156 1.24240 1.19470 1.15442 1.01215 1.01555 0.90386 1.25663 1.02352 0.97621 0.99917 1.70160 1.47044 1.14498 1.27980 0.84971 0.78065 0.77923 0.78117 1.19296 1.21683 1.21457 1.21913 0.95090 0.87326 0.95487 1.83993 1.15399 1.35903 1.71475 0.89716 0.87174 0.86998 0.79813 0.90608 0.88858 0.91768 0.74765 0.89076 0.89252 0.96500 0.96335 0.94153 0.95294 0.95265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.41 71.24 0.74 0.20 16 2 C 0.03 0.49 7.31 24.97 0.18 0.67 16 3 C -0.23 -4.07 10.73 22.07 0.24 -3.83 16 4 C -0.09 -2.13 6.20 -19.74 -0.12 -2.26 16 5 C -0.09 -2.13 9.82 71.24 0.70 -1.43 16 6 C -0.12 -3.35 7.13 24.07 0.17 -3.18 16 7 C 0.60 19.96 7.79 86.44 0.67 20.63 16 8 O -0.55 -21.92 14.38 -4.33 -0.06 -21.98 16 9 N -0.69 -21.46 5.19 -439.93 -2.28 -23.75 16 10 C 0.15 5.44 3.42 46.38 0.16 5.60 16 11 H 0.08 3.45 7.54 -2.39 -0.02 3.43 16 12 C -0.13 -4.62 6.60 31.78 0.21 -4.41 16 13 C 0.19 9.24 5.37 86.73 0.47 9.70 16 14 N -0.63 -33.72 3.39 -691.98 -2.35 -36.07 16 15 C -0.25 -14.53 10.28 84.03 0.86 -13.67 16 16 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 17 C -0.06 -3.63 5.49 84.86 0.47 -3.17 16 18 N -0.95 -57.58 10.31 21.65 0.22 -57.36 16 19 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 C 0.13 5.76 6.93 86.85 0.60 6.37 16 24 O -0.17 -4.01 10.40 -5.04 -0.05 -4.06 16 25 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.78 6.45 -2.38 -0.02 1.76 16 32 H 0.42 10.53 8.32 -92.71 -0.77 9.76 16 33 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 34 H 0.09 2.75 8.00 -2.39 -0.02 2.73 16 35 H 0.02 0.94 7.38 -2.39 -0.02 0.92 16 36 H 0.02 1.01 7.51 -2.39 -0.02 0.99 16 37 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -74.03 326.54 3.14 -70.89 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.29 Total: 12.24 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 5.35 Total: 11.23 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -4.41 Total: -117.18 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.11 Total: -26.04 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -74.03 3.14 -70.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010486987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.503 kcal (2) G-P(sol) polarization free energy of solvation -74.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds