Wall clock time and date at job start Tue Mar 31 2020 01:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40371 * 126.43838 * 2 1 4 4 C 1.36542 * 106.70404 * 180.02562 * 3 2 1 5 5 C 1.46661 * 125.98561 * 179.97438 * 4 3 2 6 6 O 1.21690 * 119.99859 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99975 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99796 * 179.97438 * 7 5 4 9 9 H 1.08993 * 110.88715 * 31.11705 * 8 7 5 10 10 C 1.55159 * 111.00248 * 155.00033 * 8 7 5 11 11 C 1.54320 * 102.94349 * 82.57245 * 10 8 7 12 12 N 1.47018 * 107.27210 * 22.19183 * 11 10 8 13 13 C 1.36945 * 125.64695 * 181.02594 * 12 11 10 14 14 H 1.08000 * 119.99441 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00031 * 0.02562 * 13 12 11 16 16 N 1.31619 * 120.00283 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46722 * 90.00437 * 17 15 13 19 19 H 1.48497 * 109.47157 * 210.00127 * 17 15 13 20 20 H 1.48494 * 109.47346 * 330.00290 * 17 15 13 21 21 C 1.47421 * 108.70379 * 1.28563 * 12 11 10 22 22 O 1.34916 * 108.02775 * 0.24537 * 4 3 2 23 23 C 1.33933 * 109.38338 * 359.59860 * 22 4 3 24 24 C 1.50702 * 125.61590 * 180.12707 * 23 22 4 25 25 H 1.08997 * 109.47204 * 90.02527 * 1 2 3 26 26 H 1.08998 * 109.46766 * 210.02170 * 1 2 3 27 27 H 1.08992 * 109.47468 * 330.02045 * 1 2 3 28 28 H 1.07992 * 126.64435 * 359.97438 * 3 2 1 29 29 H 0.97002 * 120.00333 * 359.97438 * 7 5 4 30 30 H 1.08996 * 110.71852 * 324.20747 * 10 8 7 31 31 H 1.08998 * 110.86977 * 201.00616 * 10 8 7 32 32 H 1.09010 * 109.88205 * 262.77471 * 11 10 8 33 33 H 1.09004 * 110.01290 * 141.68524 * 11 10 8 34 34 H 0.96998 * 120.00243 * 179.97438 * 16 15 13 35 35 H 1.08996 * 110.36244 * 94.48455 * 21 12 11 36 36 H 1.08997 * 110.36930 * 216.80538 * 21 12 11 37 37 H 1.09000 * 109.46502 * 270.32407 * 24 23 22 38 38 H 1.08999 * 109.47063 * 30.32748 * 24 23 22 39 39 H 1.08997 * 109.46841 * 150.32599 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1293 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8379 1.4943 -0.0013 6 8 4.7470 2.7078 -0.0019 7 7 6.0521 0.9094 -0.0024 8 6 7.2626 1.7346 -0.0037 9 1 7.0931 2.6739 0.5225 10 6 8.4621 0.9632 0.6075 11 6 8.9687 0.1159 -0.5787 12 7 8.5045 0.7689 -1.8113 13 6 8.7275 0.3192 -3.0855 14 1 8.3431 0.8737 -3.9288 15 6 9.4475 -0.8492 -3.2930 16 7 9.9156 -1.5252 -2.2652 17 14 9.7511 -1.4630 -5.0310 18 1 11.0183 -0.8847 -5.5458 19 1 9.8506 -2.9446 -5.0224 20 1 8.6258 -1.0476 -5.9063 21 6 7.7646 1.9914 -1.4489 22 8 3.5858 -0.6803 -0.0064 23 6 2.3098 -1.0870 -0.0007 24 6 1.8456 -2.5208 -0.0017 25 1 -0.3633 -0.0005 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8901 0.5135 28 1 2.0265 2.1625 -0.0004 29 1 6.1245 -0.0579 -0.0023 30 1 8.1324 0.3230 1.4257 31 1 9.2350 1.6528 0.9467 32 1 8.5585 -0.8921 -0.5161 33 1 10.0579 0.0739 -0.5689 34 1 10.4184 -2.3419 -2.4102 35 1 8.4264 2.8571 -1.4748 36 1 6.9205 2.1379 -2.1228 37 1 1.7339 -2.8657 -1.0296 38 1 2.5803 -3.1409 0.5119 39 1 0.8869 -2.5926 0.5119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010619128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:21 Heat of formation + Delta-G solvation = -2.788925 kcal Electronic energy + Delta-G solvation = -21644.427377 eV Core-core repulsion = 18361.262188 eV Total energy + Delta-G solvation = -3283.165189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.71494 -39.39067 -37.20543 -34.60830 -33.69409 -32.14837 -31.69042 -29.25658 -28.80879 -27.54431 -26.16074 -24.43319 -22.52328 -21.14136 -20.13449 -20.02206 -19.47262 -17.80589 -16.79892 -16.50776 -15.97533 -15.47100 -14.66252 -14.49132 -14.23206 -13.87900 -13.71259 -13.44863 -13.32746 -13.07294 -12.94469 -12.77353 -12.42244 -12.34261 -11.94102 -11.82501 -11.66927 -10.96102 -10.91262 -10.74094 -10.42464 -10.13756 -9.96762 -9.92688 -9.71787 -9.68183 -8.83441 -8.57536 -8.33852 -6.82383 -5.71918 -3.04605 1.12865 2.25492 2.67141 3.36039 3.40028 3.45430 3.47063 3.48513 4.50295 4.56253 4.70362 4.82363 5.03932 5.22293 5.25949 5.33943 5.43927 5.45070 5.48157 5.50977 5.63264 5.71907 5.75492 5.82728 5.86529 5.98651 6.17492 6.34846 6.41103 6.47381 6.48464 6.67238 6.86224 7.02784 7.53550 7.55672 7.78663 7.81679 8.24712 8.35758 9.21986 9.81872 10.47413 11.40066 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.004716 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.144650 B = 5936.202010 C = 6776.548116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.197 4.197 3 C -0.122 4.122 4 C -0.067 4.067 5 C 0.601 3.399 6 O -0.532 6.532 7 N -0.690 5.690 8 C 0.126 3.874 9 H 0.094 0.906 10 C -0.153 4.153 11 C 0.175 3.825 12 N -0.604 5.604 13 C -0.225 4.225 14 H 0.077 0.923 15 C -0.008 4.008 16 N -0.923 5.923 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.125 3.875 22 O -0.157 6.157 23 C 0.013 3.987 24 C -0.077 4.077 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.158 0.842 29 H 0.408 0.592 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.252 0.748 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.948 -0.164 7.951 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.198 4.198 3 C -0.143 4.143 4 C -0.120 4.120 5 C 0.386 3.614 6 O -0.411 6.411 7 N -0.339 5.339 8 C 0.020 3.980 9 H 0.111 0.889 10 C -0.192 4.192 11 C 0.050 3.950 12 N -0.331 5.331 13 C -0.353 4.353 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.571 5.571 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.208 1.208 21 C -0.002 4.002 22 O -0.053 6.053 23 C -0.039 4.039 24 C -0.133 4.133 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.176 0.824 29 H 0.243 0.757 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.594 0.323 7.842 17.457 hybrid contribution 0.242 -0.742 -1.008 1.275 sum -15.352 -0.419 6.834 16.809 Atomic orbital electron populations 1.20163 0.88789 1.02523 1.02137 1.20166 0.97347 0.91833 1.10450 1.21753 0.90529 1.00296 1.01678 1.22131 0.96354 0.80203 1.13266 1.16532 0.81352 0.86311 0.77178 1.90841 1.86053 1.12191 1.52004 1.45769 1.04805 1.11136 1.72165 1.22268 0.83159 0.94068 0.98458 0.88852 1.23226 0.96365 0.99901 0.99722 1.21188 0.98254 0.93749 0.81817 1.44486 1.62660 1.23460 1.02516 1.19065 1.28702 1.05126 0.82456 0.90532 1.24770 1.00467 0.97722 0.97460 1.69949 1.41395 1.17988 1.27810 0.86124 0.78040 0.77857 0.83795 1.21604 1.21701 1.20761 1.21993 0.94731 0.90753 0.92752 1.84053 1.28675 1.21914 1.70637 1.22561 0.80778 0.97148 1.03419 1.20390 1.01781 0.87240 1.03936 0.91400 0.91639 0.91450 0.82440 0.75655 0.91538 0.90717 0.93582 0.93634 0.93812 0.95144 0.93893 0.89597 0.90115 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.17 36.01 0.37 -0.28 16 2 C -0.20 -2.35 6.14 -104.92 -0.64 -3.00 16 3 C -0.12 -1.73 10.57 -39.39 -0.42 -2.14 16 4 C -0.07 -1.09 7.13 -36.80 -0.26 -1.35 16 5 C 0.60 10.87 7.79 -12.86 -0.10 10.77 16 6 O -0.53 -10.68 16.50 5.20 0.09 -10.60 16 7 N -0.69 -12.39 5.19 -52.92 -0.27 -12.66 16 8 C 0.13 2.32 3.43 -65.66 -0.23 2.09 16 9 H 0.09 1.63 7.54 -51.93 -0.39 1.24 16 10 C -0.15 -2.76 6.54 -24.90 -0.16 -2.93 16 11 C 0.17 4.12 5.37 -3.07 -0.02 4.10 16 12 N -0.60 -15.42 3.39 -169.94 -0.58 -16.00 16 13 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 14 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 15 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 16 N -0.92 -26.86 10.31 55.49 0.57 -26.29 16 17 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.12 2.71 6.95 -2.41 -0.02 2.69 16 22 O -0.16 -2.40 10.40 4.99 0.05 -2.35 16 23 C 0.01 0.16 7.31 -35.41 -0.26 -0.09 16 24 C -0.08 -0.62 10.21 36.01 0.37 -0.25 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.42 7.13 -51.93 -0.37 0.05 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.16 2.05 8.06 -52.49 -0.42 1.62 16 29 H 0.41 7.25 8.42 -40.82 -0.34 6.91 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.19 7.38 -51.92 -0.38 0.80 16 33 H 0.05 1.19 7.50 -51.93 -0.39 0.80 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.51 7.13 -51.93 -0.37 0.14 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -32.37 328.47 -7.44 -39.80 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.60 Total: 3.11 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.62 Total: 2.78 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.28 Total: -54.95 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.14 Total: -12.95 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.37 -7.44 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010619128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.016 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds