Wall clock time and date at job start Tue Mar 31 2020 01:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40371 * 126.43838 * 2 1 4 4 C 1.36542 * 106.70404 * 180.02562 * 3 2 1 5 5 C 1.46661 * 125.98561 * 179.97438 * 4 3 2 6 6 O 1.21690 * 119.99859 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99975 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99796 * 179.97438 * 7 5 4 9 9 H 1.08993 * 110.88715 * 31.11705 * 8 7 5 10 10 C 1.55159 * 111.00248 * 155.00033 * 8 7 5 11 11 C 1.54320 * 102.94349 * 82.57245 * 10 8 7 12 12 N 1.47018 * 107.27210 * 22.19183 * 11 10 8 13 13 C 1.36945 * 125.64695 * 181.02594 * 12 11 10 14 14 H 1.08000 * 119.99441 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00031 * 0.02562 * 13 12 11 16 16 N 1.31619 * 120.00283 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46722 * 90.00437 * 17 15 13 19 19 H 1.48497 * 109.47157 * 210.00127 * 17 15 13 20 20 H 1.48494 * 109.47346 * 330.00290 * 17 15 13 21 21 C 1.47421 * 108.70379 * 1.28563 * 12 11 10 22 22 O 1.34916 * 108.02775 * 0.24537 * 4 3 2 23 23 C 1.33933 * 109.38338 * 359.59860 * 22 4 3 24 24 C 1.50702 * 125.61590 * 180.12707 * 23 22 4 25 25 H 1.08997 * 109.47204 * 90.02527 * 1 2 3 26 26 H 1.08998 * 109.46766 * 210.02170 * 1 2 3 27 27 H 1.08992 * 109.47468 * 330.02045 * 1 2 3 28 28 H 1.07992 * 126.64435 * 359.97438 * 3 2 1 29 29 H 0.97002 * 120.00333 * 359.97438 * 7 5 4 30 30 H 1.08996 * 110.71852 * 324.20747 * 10 8 7 31 31 H 1.08998 * 110.86977 * 201.00616 * 10 8 7 32 32 H 1.09010 * 109.88205 * 262.77471 * 11 10 8 33 33 H 1.09004 * 110.01290 * 141.68524 * 11 10 8 34 34 H 0.96998 * 120.00243 * 179.97438 * 16 15 13 35 35 H 1.08996 * 110.36244 * 94.48455 * 21 12 11 36 36 H 1.08997 * 110.36930 * 216.80538 * 21 12 11 37 37 H 1.09000 * 109.46502 * 270.32407 * 24 23 22 38 38 H 1.08999 * 109.47063 * 30.32748 * 24 23 22 39 39 H 1.08997 * 109.46841 * 150.32599 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1293 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8379 1.4943 -0.0013 6 8 4.7470 2.7078 -0.0019 7 7 6.0521 0.9094 -0.0024 8 6 7.2626 1.7346 -0.0037 9 1 7.0931 2.6739 0.5225 10 6 8.4621 0.9632 0.6075 11 6 8.9687 0.1159 -0.5787 12 7 8.5045 0.7689 -1.8113 13 6 8.7275 0.3192 -3.0855 14 1 8.3431 0.8737 -3.9288 15 6 9.4475 -0.8492 -3.2930 16 7 9.9156 -1.5252 -2.2652 17 14 9.7511 -1.4630 -5.0310 18 1 11.0183 -0.8847 -5.5458 19 1 9.8506 -2.9446 -5.0224 20 1 8.6258 -1.0476 -5.9063 21 6 7.7646 1.9914 -1.4489 22 8 3.5858 -0.6803 -0.0064 23 6 2.3098 -1.0870 -0.0007 24 6 1.8456 -2.5208 -0.0017 25 1 -0.3633 -0.0005 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8901 0.5135 28 1 2.0265 2.1625 -0.0004 29 1 6.1245 -0.0579 -0.0023 30 1 8.1324 0.3230 1.4257 31 1 9.2350 1.6528 0.9467 32 1 8.5585 -0.8921 -0.5161 33 1 10.0579 0.0739 -0.5689 34 1 10.4184 -2.3419 -2.4102 35 1 8.4264 2.8571 -1.4748 36 1 6.9205 2.1379 -2.1228 37 1 1.7339 -2.8657 -1.0296 38 1 2.5803 -3.1409 0.5119 39 1 0.8869 -2.5926 0.5119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010619128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:19 Heat of formation + Delta-G solvation = -24.006094 kcal Electronic energy + Delta-G solvation = -21645.347423 eV Core-core repulsion = 18361.262188 eV Total energy + Delta-G solvation = -3284.085235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.77046 -40.86298 -38.88821 -35.71353 -35.26146 -33.71826 -32.93368 -31.07589 -29.67232 -29.11155 -27.34655 -26.32019 -23.72364 -22.28430 -21.98633 -21.53157 -20.70990 -19.15394 -18.65850 -17.62419 -17.48640 -16.69054 -16.55615 -15.95730 -15.69291 -15.53059 -15.01389 -14.58845 -14.15519 -14.12909 -13.96072 -13.88196 -13.66201 -13.62670 -13.59184 -12.95598 -12.91281 -12.84016 -12.45620 -12.35940 -12.16102 -12.05379 -11.85039 -11.63709 -11.40127 -10.75955 -10.73508 -10.25090 -9.38053 -8.88856 -7.86971 -5.21631 -0.02933 1.26835 1.44205 1.45579 1.54239 1.59454 2.04591 2.17729 2.47649 3.31878 3.54812 3.63664 3.75290 3.80146 3.89257 4.02210 4.26336 4.31095 4.46370 4.63378 4.65966 4.68159 4.70285 4.74035 4.84969 4.90117 4.92577 4.99989 5.06918 5.08694 5.10845 5.41683 5.42321 5.57982 5.63813 5.73973 5.87868 6.17913 6.40777 6.94946 7.09578 7.74764 8.38895 9.23069 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.004716 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.144650 B = 5936.202010 C = 6776.548116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.202 4.202 3 C -0.116 4.116 4 C -0.107 4.107 5 C 0.602 3.398 6 O -0.559 6.559 7 N -0.692 5.692 8 C 0.137 3.863 9 H 0.112 0.888 10 C -0.133 4.133 11 C 0.183 3.817 12 N -0.622 5.622 13 C -0.245 4.245 14 H 0.073 0.927 15 C -0.059 4.059 16 N -0.946 5.946 17 Si 0.976 3.024 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.274 1.274 21 C 0.122 3.878 22 O -0.176 6.176 23 C 0.014 3.986 24 C -0.078 4.078 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.408 0.592 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.017 0.983 33 H 0.013 0.987 34 H 0.248 0.752 35 H 0.040 0.960 36 H 0.027 0.973 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.892 -0.657 8.387 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.203 4.203 3 C -0.137 4.137 4 C -0.159 4.159 5 C 0.389 3.611 6 O -0.440 6.440 7 N -0.340 5.340 8 C 0.032 3.968 9 H 0.129 0.871 10 C -0.171 4.171 11 C 0.058 3.942 12 N -0.349 5.349 13 C -0.374 4.374 14 H 0.091 0.909 15 C -0.252 4.252 16 N -0.595 5.595 17 Si 0.804 3.196 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.200 1.200 21 C -0.005 4.005 22 O -0.073 6.073 23 C -0.038 4.038 24 C -0.134 4.134 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.182 0.818 29 H 0.243 0.757 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.035 0.965 33 H 0.031 0.969 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.555 -0.152 8.288 19.413 hybrid contribution 0.751 -0.613 -1.159 1.511 sum -16.804 -0.765 7.129 18.269 Atomic orbital electron populations 1.20288 0.85843 1.04123 1.03185 1.20613 0.99245 0.90647 1.09795 1.22071 0.90330 1.01421 0.99882 1.21832 0.96127 0.80849 1.17070 1.16753 0.81817 0.86258 0.76230 1.90805 1.86580 1.13270 1.53371 1.45768 1.04841 1.11016 1.72339 1.22150 0.83468 0.94984 0.96184 0.87054 1.23088 0.96486 0.99675 0.97895 1.20967 0.96147 0.93589 0.83466 1.44723 1.63102 1.24715 1.02371 1.19369 1.28744 1.05480 0.83780 0.90875 1.25549 1.00532 0.97964 1.01172 1.70150 1.41817 1.18025 1.29499 0.85127 0.77955 0.76983 0.79540 1.21221 1.21675 1.19965 1.22123 0.94003 0.89724 0.94604 1.84031 1.30531 1.21448 1.71245 1.23530 0.79759 0.99264 1.01285 1.20659 1.03164 0.84433 1.05137 0.90508 0.89257 0.90725 0.81833 0.75703 0.89045 0.88425 0.96465 0.96908 0.94285 0.94206 0.95498 0.88445 0.89769 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.17 71.24 0.72 -0.30 16 2 C -0.20 -4.42 6.14 -20.06 -0.12 -4.54 16 3 C -0.12 -3.21 10.57 22.39 0.24 -2.97 16 4 C -0.11 -3.49 7.13 24.07 0.17 -3.32 16 5 C 0.60 21.98 7.79 86.44 0.67 22.65 16 6 O -0.56 -22.60 16.50 -4.32 -0.07 -22.67 16 7 N -0.69 -24.92 5.19 -439.57 -2.28 -27.20 16 8 C 0.14 4.98 3.43 46.46 0.16 5.14 16 9 H 0.11 3.72 7.54 -2.39 -0.02 3.70 16 10 C -0.13 -4.64 6.54 31.78 0.21 -4.43 16 11 C 0.18 8.81 5.37 86.73 0.47 9.28 16 12 N -0.62 -32.41 3.39 -691.56 -2.35 -34.76 16 13 C -0.24 -14.06 10.28 84.03 0.86 -13.20 16 14 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 15 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16 16 N -0.95 -56.32 10.31 21.65 0.22 -56.09 16 17 Si 0.98 46.30 29.55 68.60 2.03 48.32 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 C 0.12 5.33 6.95 86.93 0.60 5.93 16 22 O -0.18 -5.33 10.40 -5.08 -0.05 -5.39 16 23 C 0.01 0.32 7.31 24.97 0.18 0.50 16 24 C -0.08 -1.02 10.21 71.24 0.73 -0.30 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 0.75 7.13 -2.39 -0.02 0.73 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.41 14.72 8.42 -92.71 -0.78 13.94 16 30 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.02 0.91 7.38 -2.38 -0.02 0.90 16 33 H 0.01 0.69 7.50 -2.38 -0.02 0.67 16 34 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.12 0.85 7.13 -2.39 -0.02 0.83 16 Total: -1.00 -71.72 328.47 3.13 -68.59 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.28 Total: 17.66 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.36 Total: 11.54 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -4.41 Total: -118.06 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.12 Total: -28.06 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -71.72 3.13 -68.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010619128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.581 kcal (2) G-P(sol) polarization free energy of solvation -71.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds