Wall clock time and date at job start Tue Mar 31 2020 00:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34520 * 125.78890 * 2 1 4 4 C 1.41375 * 106.84284 * 179.79301 * 3 2 1 5 5 C 1.34510 * 106.84024 * 0.36958 * 4 3 2 6 6 C 1.50705 * 125.78813 * 179.88609 * 5 4 3 7 7 C 1.50700 * 109.46660 * 89.72189 * 6 5 4 8 8 O 1.21284 * 120.00316 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99830 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00177 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.64117 * 36.68202 * 10 9 7 12 12 C 1.55156 * 110.87405 * 159.93748 * 10 9 7 13 13 C 1.55126 * 101.48754 * 82.76470 * 12 10 9 14 14 N 1.47434 * 104.72222 * 37.29406 * 13 12 10 15 15 C 1.36932 * 125.64632 * 155.81137 * 14 13 12 16 16 H 1.08002 * 120.00190 * 193.30500 * 15 14 13 17 17 C 1.38810 * 120.00000 * 13.31675 * 15 14 13 18 18 N 1.31622 * 120.00329 * 27.27513 * 17 15 14 19 19 Si 1.86804 * 120.00004 * 207.27879 * 17 15 14 20 20 H 1.48504 * 109.47028 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47343 * 119.99619 * 19 17 15 22 22 H 1.48500 * 109.47052 * 239.99862 * 19 17 15 23 23 C 1.47021 * 108.70158 * 335.55483 * 14 13 12 24 24 O 1.34299 * 125.79586 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.47178 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47279 * 300.00045 * 1 2 3 27 27 H 1.08997 * 109.47730 * 60.00136 * 1 2 3 28 28 H 1.08005 * 126.57642 * 0.04181 * 3 2 1 29 29 H 1.08000 * 126.58139 * 180.23285 * 4 3 2 30 30 H 1.08992 * 109.47178 * 329.71936 * 6 5 4 31 31 H 1.09001 * 109.47202 * 209.71705 * 6 5 4 32 32 H 0.97003 * 120.00025 * 359.97438 * 9 7 6 33 33 H 1.09000 * 111.00053 * 201.00848 * 12 10 9 34 34 H 1.08999 * 111.00390 * 324.85552 * 12 10 9 35 35 H 1.08997 * 110.50082 * 278.45370 * 13 12 10 36 36 H 1.08999 * 110.34237 * 156.05327 * 13 12 10 37 37 H 0.96997 * 119.99781 * 5.85554 * 18 17 15 38 38 H 1.08998 * 109.88098 * 120.70139 * 23 14 13 39 39 H 1.09001 * 109.88035 * 241.86508 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 0.0049 5 6 3.5814 -0.7120 -0.0007 6 6 4.7707 -1.6376 -0.0009 7 6 5.1669 -1.9464 1.4199 8 8 4.5452 -1.4622 2.3419 9 7 6.2123 -2.7607 1.6662 10 6 6.5979 -3.0605 3.0474 11 1 5.7162 -3.1457 3.6826 12 6 7.4504 -4.3551 3.1148 13 6 8.8617 -3.8142 2.7652 14 7 8.9287 -2.4933 3.4166 15 6 10.0754 -1.8457 3.7916 16 1 10.0223 -0.9903 4.4487 17 6 11.3062 -2.2886 3.3270 18 7 11.3859 -2.9229 2.1765 19 14 12.8494 -1.9844 4.3347 20 1 12.4928 -1.2558 5.5786 21 1 13.4765 -3.2842 4.6844 22 1 13.8059 -1.1707 3.5420 23 6 7.5606 -1.9839 3.5913 24 8 2.2925 -1.0893 -0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.9664 2.1205 0.0006 29 1 4.5211 1.2435 0.0097 30 1 5.6040 -1.1584 -0.5145 31 1 4.5108 -2.5630 -0.5149 32 1 6.7093 -3.1483 0.9288 33 1 7.4300 -4.7846 4.1164 34 1 7.1175 -5.0812 2.3731 35 1 8.9744 -3.7110 1.6859 36 1 9.6306 -4.4744 3.1663 37 1 10.6006 -3.0066 1.6134 38 1 7.3623 -1.8095 4.6488 39 1 7.4357 -1.0575 3.0308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010672154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:24 Heat of formation + Delta-G solvation = -0.997869 kcal Electronic energy + Delta-G solvation = -21325.013755 eV Core-core repulsion = 18041.926232 eV Total energy + Delta-G solvation = -3283.087523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.61926 -39.67968 -37.46824 -34.02824 -33.21582 -33.08967 -31.92015 -30.08749 -29.10773 -27.35151 -25.16021 -24.27848 -21.88812 -21.18002 -20.28150 -20.06900 -19.90162 -17.63685 -17.20528 -16.77818 -15.98898 -15.67360 -15.24064 -14.58630 -14.29539 -13.86147 -13.71729 -13.51025 -13.36919 -13.13575 -13.07797 -12.83046 -12.65832 -12.37781 -12.06942 -11.94354 -11.67621 -10.98097 -10.78063 -10.71135 -10.46762 -10.31734 -10.05282 -9.89179 -9.74956 -9.55604 -8.79906 -8.42501 -8.30028 -6.96349 -6.10981 -3.12745 1.63607 2.55384 2.72073 2.82555 3.45036 3.51911 3.54822 3.68378 4.43893 4.58450 4.77566 4.89392 4.96829 5.00821 5.13048 5.18264 5.22749 5.23161 5.31910 5.35724 5.48926 5.57309 5.69603 5.79341 5.94570 6.01567 6.09346 6.12514 6.24844 6.37593 6.51409 6.64773 6.87332 6.92625 6.98586 7.13719 7.66466 7.78472 8.36528 8.47994 9.01436 9.81104 10.34736 11.22951 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035591 B = 0.003369 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.516811 B = 8310.211783 C = 8595.213145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.017 4.017 3 C -0.211 4.211 4 C -0.192 4.192 5 C 0.008 3.992 6 C -0.062 4.062 7 C 0.514 3.486 8 O -0.533 6.533 9 N -0.711 5.711 10 C 0.132 3.868 11 H 0.090 0.910 12 C -0.144 4.144 13 C 0.144 3.856 14 N -0.604 5.604 15 C -0.332 4.332 16 H 0.066 0.934 17 C -0.028 4.028 18 N -0.923 5.923 19 Si 1.069 2.931 20 H -0.293 1.293 21 H -0.290 1.290 22 H -0.295 1.295 23 C 0.128 3.872 24 O -0.171 6.171 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.401 0.599 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.055 0.945 37 H 0.268 0.732 38 H 0.033 0.967 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.048 1.254 -6.995 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 C -0.230 4.230 4 C -0.211 4.211 5 C -0.043 4.043 6 C -0.101 4.101 7 C 0.299 3.701 8 O -0.410 6.410 9 N -0.363 5.363 10 C 0.028 3.972 11 H 0.108 0.892 12 C -0.183 4.183 13 C 0.018 3.982 14 N -0.332 5.332 15 C -0.460 4.460 16 H 0.084 0.916 17 C -0.228 4.228 18 N -0.565 5.565 19 Si 0.899 3.101 20 H -0.219 1.219 21 H -0.217 1.217 22 H -0.222 1.222 23 C 0.002 3.998 24 O -0.068 6.068 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.164 0.836 29 H 0.165 0.835 30 H 0.142 0.858 31 H 0.128 0.872 32 H 0.235 0.765 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -16.881 1.076 -6.174 18.007 hybrid contribution -1.185 0.483 -0.441 1.354 sum -18.067 1.560 -6.615 19.303 Atomic orbital electron populations 1.20273 0.85269 1.03860 1.03381 1.22362 0.93880 0.84195 1.06305 1.21504 0.92689 0.99309 1.09478 1.21518 0.98286 0.93751 1.07575 1.21422 0.82491 0.93885 1.06475 1.20112 0.93687 1.00088 0.96246 1.20297 0.80252 0.78863 0.90714 1.90729 1.53361 1.50869 1.46021 1.45936 1.31920 1.49140 1.09263 1.21968 0.97288 0.95971 0.82017 0.89196 1.23183 0.97491 0.95362 1.02242 1.21605 0.93104 0.87780 0.95720 1.44604 1.00739 1.15936 1.71883 1.19830 0.84630 1.15049 1.26475 0.91567 1.25709 0.99620 0.99870 0.97632 1.70748 1.32367 1.45199 1.08212 0.83475 0.75458 0.76101 0.75067 1.21884 1.21667 1.22223 1.21691 0.85542 0.94790 0.97816 1.83910 1.16247 1.35121 1.71558 0.90726 0.89767 0.89848 0.83611 0.83531 0.85764 0.87183 0.76481 0.90103 0.91194 0.95823 0.92617 0.92041 0.94876 0.95481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.42 36.00 0.37 -0.17 16 2 C -0.02 -0.21 7.32 -35.63 -0.26 -0.47 16 3 C -0.21 -2.60 10.81 -39.70 -0.43 -3.03 16 4 C -0.19 -2.62 10.81 -39.71 -0.43 -3.05 16 5 C 0.01 0.11 5.81 -35.62 -0.21 -0.10 16 6 C -0.06 -0.72 6.23 -29.03 -0.18 -0.90 16 7 C 0.51 8.02 7.82 -10.99 -0.09 7.94 16 8 O -0.53 -10.56 15.76 5.55 0.09 -10.47 16 9 N -0.71 -10.77 5.12 -52.03 -0.27 -11.04 16 10 C 0.13 2.32 3.24 -66.09 -0.21 2.11 16 11 H 0.09 1.57 7.69 -51.93 -0.40 1.17 16 12 C -0.14 -2.43 6.66 -24.47 -0.16 -2.59 16 13 C 0.14 3.18 5.20 -2.41 -0.01 3.17 16 14 N -0.60 -15.30 3.33 -169.93 -0.57 -15.87 16 15 C -0.33 -9.48 10.05 -15.06 -0.15 -9.63 16 16 H 0.07 1.91 7.96 -52.49 -0.42 1.50 16 17 C -0.03 -0.79 5.09 -17.43 -0.09 -0.88 16 18 N -0.92 -27.51 12.82 55.49 0.71 -26.80 16 19 Si 1.07 25.58 30.00 -169.99 -5.10 20.48 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C 0.13 2.82 6.98 -3.06 -0.02 2.80 16 24 O -0.17 -2.46 10.65 5.73 0.06 -2.39 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.40 5.20 8.63 -40.82 -0.35 4.85 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.02 0.54 6.84 -51.93 -0.36 0.19 16 36 H 0.06 1.37 7.73 -51.93 -0.40 0.97 16 37 H 0.27 7.88 5.83 -40.82 -0.24 7.64 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.64 8.04 -51.93 -0.42 0.22 16 LS Contribution 329.42 15.07 4.96 4.96 Total: -1.00 -35.40 329.42 -7.58 -42.98 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.61 Total: 2.95 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.87 Total: -4.81 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.12 Total: -53.70 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.15 Total: -12.87 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.10 Total: 20.48 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.40 -7.58 -42.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010672154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.983 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds