Wall clock time and date at job start Tue Mar 31 2020 00:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34520 * 125.78890 * 2 1 4 4 C 1.41375 * 106.84284 * 179.79301 * 3 2 1 5 5 C 1.34510 * 106.84024 * 0.36958 * 4 3 2 6 6 C 1.50705 * 125.78813 * 179.88609 * 5 4 3 7 7 C 1.50700 * 109.46660 * 89.72189 * 6 5 4 8 8 O 1.21284 * 120.00316 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99830 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00177 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.64117 * 36.68202 * 10 9 7 12 12 C 1.55156 * 110.87405 * 159.93748 * 10 9 7 13 13 C 1.55126 * 101.48754 * 82.76470 * 12 10 9 14 14 N 1.47434 * 104.72222 * 37.29406 * 13 12 10 15 15 C 1.36932 * 125.64632 * 155.81137 * 14 13 12 16 16 H 1.08002 * 120.00190 * 193.30500 * 15 14 13 17 17 C 1.38810 * 120.00000 * 13.31675 * 15 14 13 18 18 N 1.31622 * 120.00329 * 27.27513 * 17 15 14 19 19 Si 1.86804 * 120.00004 * 207.27879 * 17 15 14 20 20 H 1.48504 * 109.47028 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47343 * 119.99619 * 19 17 15 22 22 H 1.48500 * 109.47052 * 239.99862 * 19 17 15 23 23 C 1.47021 * 108.70158 * 335.55483 * 14 13 12 24 24 O 1.34299 * 125.79586 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.47178 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47279 * 300.00045 * 1 2 3 27 27 H 1.08997 * 109.47730 * 60.00136 * 1 2 3 28 28 H 1.08005 * 126.57642 * 0.04181 * 3 2 1 29 29 H 1.08000 * 126.58139 * 180.23285 * 4 3 2 30 30 H 1.08992 * 109.47178 * 329.71936 * 6 5 4 31 31 H 1.09001 * 109.47202 * 209.71705 * 6 5 4 32 32 H 0.97003 * 120.00025 * 359.97438 * 9 7 6 33 33 H 1.09000 * 111.00053 * 201.00848 * 12 10 9 34 34 H 1.08999 * 111.00390 * 324.85552 * 12 10 9 35 35 H 1.08997 * 110.50082 * 278.45370 * 13 12 10 36 36 H 1.08999 * 110.34237 * 156.05327 * 13 12 10 37 37 H 0.96997 * 119.99781 * 5.85554 * 18 17 15 38 38 H 1.08998 * 109.88098 * 120.70139 * 23 14 13 39 39 H 1.09001 * 109.88035 * 241.86508 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 0.0049 5 6 3.5814 -0.7120 -0.0007 6 6 4.7707 -1.6376 -0.0009 7 6 5.1669 -1.9464 1.4199 8 8 4.5452 -1.4622 2.3419 9 7 6.2123 -2.7607 1.6662 10 6 6.5979 -3.0605 3.0474 11 1 5.7162 -3.1457 3.6826 12 6 7.4504 -4.3551 3.1148 13 6 8.8617 -3.8142 2.7652 14 7 8.9287 -2.4933 3.4166 15 6 10.0754 -1.8457 3.7916 16 1 10.0223 -0.9903 4.4487 17 6 11.3062 -2.2886 3.3270 18 7 11.3859 -2.9229 2.1765 19 14 12.8494 -1.9844 4.3347 20 1 12.4928 -1.2558 5.5786 21 1 13.4765 -3.2842 4.6844 22 1 13.8059 -1.1707 3.5420 23 6 7.5606 -1.9839 3.5913 24 8 2.2925 -1.0893 -0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.9664 2.1205 0.0006 29 1 4.5211 1.2435 0.0097 30 1 5.6040 -1.1584 -0.5145 31 1 4.5108 -2.5630 -0.5149 32 1 6.7093 -3.1483 0.9288 33 1 7.4300 -4.7846 4.1164 34 1 7.1175 -5.0812 2.3731 35 1 8.9744 -3.7110 1.6859 36 1 9.6306 -4.4744 3.1663 37 1 10.6006 -3.0066 1.6134 38 1 7.3623 -1.8095 4.6488 39 1 7.4357 -1.0575 3.0308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010672154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:23 Heat of formation + Delta-G solvation = -24.944132 kcal Electronic energy + Delta-G solvation = -21326.052143 eV Core-core repulsion = 18041.926232 eV Total energy + Delta-G solvation = -3284.125911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.57648 -41.03764 -39.09762 -35.71926 -34.24318 -34.06992 -33.54841 -31.25204 -30.67026 -28.97343 -26.49792 -25.88711 -22.92598 -22.42364 -22.07194 -21.42062 -21.03341 -19.64833 -18.44505 -17.88430 -17.12178 -16.85571 -16.50402 -16.29077 -15.66645 -15.53767 -15.12578 -15.03361 -14.73327 -14.25522 -13.92057 -13.78871 -13.72823 -13.64764 -13.61435 -13.01379 -12.68892 -12.57815 -12.54804 -12.46268 -12.28683 -11.98325 -11.88196 -11.60034 -11.10705 -10.82953 -10.55304 -10.19258 -9.23816 -9.05148 -8.35078 -5.33536 0.66673 1.52092 1.57314 1.58704 1.64859 1.81759 1.89361 2.27972 2.62004 3.17191 3.46460 3.52937 3.61539 3.86379 3.90461 3.97578 4.09387 4.15891 4.23644 4.39587 4.43996 4.52226 4.56187 4.71854 4.78769 4.84198 4.84845 4.91225 4.91595 5.04555 5.05876 5.24651 5.26790 5.48136 5.61068 5.62662 6.18211 6.31507 6.47280 6.88998 7.16029 7.68274 8.24363 8.99075 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035591 B = 0.003369 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.516811 B = 8310.211783 C = 8595.213145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.023 4.023 3 C -0.229 4.229 4 C -0.211 4.211 5 C -0.015 4.015 6 C -0.053 4.053 7 C 0.513 3.487 8 O -0.579 6.579 9 N -0.704 5.704 10 C 0.146 3.854 11 H 0.098 0.902 12 C -0.121 4.121 13 C 0.145 3.855 14 N -0.624 5.624 15 C -0.350 4.350 16 H 0.052 0.948 17 C -0.073 4.073 18 N -0.944 5.944 19 Si 1.119 2.881 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.290 1.290 23 C 0.127 3.873 24 O -0.189 6.189 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.414 0.586 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.019 0.981 36 H 0.025 0.975 37 H 0.260 0.740 38 H 0.025 0.975 39 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.152 0.581 -7.618 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.247 4.247 4 C -0.230 4.230 5 C -0.065 4.065 6 C -0.092 4.092 7 C 0.300 3.700 8 O -0.459 6.459 9 N -0.355 5.355 10 C 0.040 3.960 11 H 0.115 0.885 12 C -0.160 4.160 13 C 0.020 3.980 14 N -0.351 5.351 15 C -0.478 4.478 16 H 0.070 0.930 17 C -0.270 4.270 18 N -0.587 5.587 19 Si 0.943 3.057 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.217 1.217 23 C 0.000 4.000 24 O -0.086 6.086 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.184 0.816 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.251 0.749 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -18.003 0.390 -6.827 19.258 hybrid contribution -0.903 0.771 -0.248 1.213 sum -18.906 1.160 -7.075 20.220 Atomic orbital electron populations 1.20484 0.82265 1.04832 1.05098 1.23232 0.95665 0.83650 1.04780 1.21851 0.92328 1.00601 1.09959 1.21828 0.99228 0.94231 1.07727 1.21798 0.83009 0.94443 1.07235 1.20184 0.93710 1.01603 0.93683 1.20978 0.79395 0.77644 0.91943 1.90709 1.54851 1.52475 1.47824 1.45843 1.31927 1.49098 1.08671 1.21706 0.96388 0.94465 0.83399 0.88454 1.23082 0.93323 0.95493 1.04054 1.21591 0.95529 0.86053 0.94815 1.44838 1.01083 1.17274 1.71949 1.20027 0.86349 1.15204 1.26216 0.93013 1.27041 1.02492 0.99527 0.97894 1.70846 1.32150 1.46703 1.09043 0.82810 0.72265 0.76406 0.74190 1.20448 1.20956 1.21653 1.21764 0.85378 0.95509 0.97307 1.83905 1.16633 1.36183 1.71895 0.90131 0.88508 0.87499 0.81596 0.83172 0.83501 0.83882 0.74934 0.89164 0.87148 0.96360 0.95628 0.92917 0.95737 0.97735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.42 71.23 0.74 -0.19 16 2 C -0.02 -0.54 7.32 24.83 0.18 -0.36 16 3 C -0.23 -5.46 10.81 22.19 0.24 -5.22 16 4 C -0.21 -5.68 10.81 22.19 0.24 -5.44 16 5 C -0.01 -0.40 5.81 24.83 0.14 -0.26 16 6 C -0.05 -1.14 6.23 29.10 0.18 -0.95 16 7 C 0.51 15.42 7.82 87.66 0.69 16.10 16 8 O -0.58 -22.82 15.76 -3.04 -0.05 -22.87 16 9 N -0.70 -20.12 5.12 -436.90 -2.24 -22.35 16 10 C 0.15 4.94 3.24 46.18 0.15 5.09 16 11 H 0.10 3.24 7.69 -2.39 -0.02 3.23 16 12 C -0.12 -3.81 6.66 32.06 0.21 -3.59 16 13 C 0.15 6.40 5.20 86.93 0.45 6.85 16 14 N -0.62 -32.06 3.33 -691.54 -2.30 -34.36 16 15 C -0.35 -20.34 10.05 84.03 0.84 -19.50 16 16 H 0.05 3.08 7.96 -2.91 -0.02 3.05 16 17 C -0.07 -4.23 5.09 84.86 0.43 -3.80 16 18 N -0.94 -56.79 12.82 21.65 0.28 -56.51 16 19 Si 1.12 51.75 30.00 68.60 2.06 53.81 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 C 0.13 5.64 6.98 86.73 0.61 6.25 16 24 O -0.19 -5.23 10.65 -2.42 -0.03 -5.26 16 25 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 30 H 0.15 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.41 9.75 8.63 -92.71 -0.80 8.95 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.02 0.84 6.84 -2.39 -0.02 0.82 16 36 H 0.03 1.27 7.73 -2.39 -0.02 1.25 16 37 H 0.26 15.53 5.83 -92.71 -0.54 14.99 16 38 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.00 0.22 8.04 -2.39 -0.02 0.20 16 Total: -1.00 -78.68 329.42 3.32 -75.35 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.48 Total: 17.20 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 5.11 Total: -5.02 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -4.26 Total: -113.22 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.07 Total: -28.13 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 2.06 Total: 53.81 kcal Total: -78.68 3.32 -75.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010672154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.410 kcal (2) G-P(sol) polarization free energy of solvation -78.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds