Wall clock time and date at job start Tue Mar 31 2020 01:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41382 * 126.58058 * 2 1 4 4 C 1.34510 * 106.84026 * 180.23393 * 3 2 1 5 5 O 1.34305 * 108.42288 * 359.77196 * 4 3 2 6 6 C 1.34306 * 109.47303 * 359.97438 * 5 4 3 7 7 C 1.50704 * 125.78659 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46866 * 270.01871 * 7 6 5 9 9 O 1.21285 * 120.00083 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99811 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99619 * 180.02562 * 10 8 7 12 12 H 1.08996 * 110.64604 * 325.69808 * 11 10 8 13 13 C 1.55160 * 110.72144 * 202.55780 * 11 10 8 14 14 C 1.55387 * 101.36919 * 277.04845 * 13 11 10 15 15 N 1.47426 * 104.86810 * 323.01421 * 14 13 11 16 16 C 1.36941 * 125.64319 * 204.16832 * 15 14 13 17 17 H 1.08001 * 119.99739 * 161.48110 * 16 15 14 18 18 C 1.38811 * 120.00074 * 341.47856 * 16 15 14 19 19 N 1.31623 * 119.99514 * 157.61254 * 18 16 15 20 20 Si 1.86789 * 120.00200 * 337.61301 * 18 16 15 21 21 H 1.48501 * 109.47403 * 84.53482 * 20 18 16 22 22 H 1.48500 * 109.47303 * 204.53560 * 20 18 16 23 23 H 1.48503 * 109.47313 * 324.53570 * 20 18 16 24 24 C 1.47018 * 108.70905 * 24.13175 * 15 14 13 25 25 H 1.09007 * 109.47052 * 270.16618 * 1 2 3 26 26 H 1.08995 * 109.47104 * 30.16111 * 1 2 3 27 27 H 1.08992 * 109.47117 * 150.16487 * 1 2 3 28 28 H 1.07992 * 126.57969 * 359.97438 * 3 2 1 29 29 H 1.08002 * 125.78939 * 179.78850 * 4 3 2 30 30 H 1.08998 * 109.46828 * 150.02716 * 7 6 5 31 31 H 1.08989 * 109.47532 * 30.02113 * 7 6 5 32 32 H 0.96996 * 119.99971 * 0.02562 * 10 8 7 33 33 H 1.09004 * 111.00070 * 35.21427 * 13 11 10 34 34 H 1.08991 * 111.00655 * 159.06376 * 13 11 10 35 35 H 1.08993 * 110.34462 * 204.16839 * 14 13 11 36 36 H 1.08998 * 110.44529 * 81.90804 * 14 13 11 37 37 H 0.96997 * 119.99266 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.88652 * 239.52825 * 24 15 14 39 39 H 1.08998 * 110.01346 * 118.42654 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6810 -0.0053 5 8 3.5848 -0.6617 -0.0034 6 6 2.3086 -1.0802 0.0037 7 6 1.8522 -2.5164 0.0073 8 6 1.6931 -2.9965 -1.4124 9 8 1.9277 -2.2464 -2.3361 10 7 1.2900 -4.2594 -1.6554 11 6 1.1359 -4.7262 -3.0355 12 1 0.7876 -3.9177 -3.6780 13 6 0.1663 -5.9358 -3.1008 14 6 1.1171 -7.1104 -2.7391 15 7 2.4006 -6.7690 -3.3790 16 6 3.3742 -7.6614 -3.7409 17 1 4.1303 -7.3748 -4.4568 18 6 3.3893 -8.9344 -3.1875 19 7 4.0034 -9.9165 -3.8128 20 14 2.5382 -9.2536 -1.5558 21 1 1.0962 -9.5178 -1.7929 22 1 3.1558 -10.4329 -0.8977 23 1 2.6858 -8.0640 -0.6793 24 6 2.4619 -5.3119 -3.5651 25 1 -0.3633 0.0030 1.0277 26 1 -0.3633 0.8885 -0.5163 27 1 -0.3633 -0.8914 -0.5112 28 1 2.0367 2.1689 -0.0004 29 1 4.5060 1.2923 -0.0099 30 1 0.8964 -2.5926 0.5258 31 1 2.5927 -3.1317 0.5181 32 1 1.1020 -4.8592 -0.9167 33 1 -0.6331 -5.8358 -2.3666 34 1 -0.2403 -6.0568 -4.1048 35 1 0.7310 -8.0476 -3.1398 36 1 1.2394 -7.1823 -1.6584 37 1 4.0142 -10.8059 -3.4259 38 1 2.5739 -5.0777 -4.6237 39 1 3.2999 -4.8991 -3.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015676147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:25 Heat of formation + Delta-G solvation = 5.147438 kcal Electronic energy + Delta-G solvation = -21636.154452 eV Core-core repulsion = 18353.333409 eV Total energy + Delta-G solvation = -3282.821043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.65894 -39.75076 -37.57973 -34.35432 -33.95565 -32.41389 -31.78760 -29.70369 -28.94213 -27.92584 -26.13459 -24.24492 -21.75018 -21.25407 -20.89987 -19.89311 -19.64066 -17.46538 -17.10418 -16.82331 -16.02776 -15.65319 -15.43737 -15.18545 -14.57975 -14.06218 -13.70451 -13.55214 -13.31697 -13.25600 -13.14932 -12.81491 -12.55930 -12.28465 -12.17939 -11.69532 -11.54956 -11.48671 -11.17189 -11.03724 -10.98155 -10.19335 -10.03545 -9.83168 -9.66636 -9.46773 -8.87524 -8.70859 -8.41139 -7.06177 -5.95480 -3.25807 1.63652 2.48236 2.68624 2.88597 3.29862 3.40611 3.42453 3.46189 4.45456 4.52173 4.77194 4.78501 4.82452 4.97144 5.02474 5.04829 5.16753 5.27992 5.34893 5.40205 5.47914 5.54331 5.66175 5.73418 5.85533 5.91715 5.98948 6.10543 6.13810 6.27467 6.47961 6.51329 6.59278 6.66183 6.87675 7.09322 7.58821 7.71235 8.30027 8.31155 8.82973 9.67536 10.15694 11.20914 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029318 B = 0.004003 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.823010 B = 6992.823628 C = 7184.190428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.168 4.168 3 C -0.212 4.212 4 C -0.037 4.037 5 O -0.169 6.169 6 C 0.008 3.992 7 C -0.064 4.064 8 C 0.515 3.485 9 O -0.530 6.530 10 N -0.714 5.714 11 C 0.131 3.869 12 H 0.096 0.904 13 C -0.138 4.138 14 C 0.109 3.891 15 N -0.608 5.608 16 C -0.241 4.241 17 H 0.092 0.908 18 C 0.020 3.980 19 N -0.909 5.909 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.303 1.303 23 H -0.278 1.278 24 C 0.126 3.874 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.146 0.854 29 H 0.201 0.799 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.023 0.977 37 H 0.263 0.737 38 H 0.042 0.958 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 18.442 10.608 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.169 4.169 3 C -0.232 4.232 4 C -0.105 4.105 5 O -0.065 6.065 6 C -0.042 4.042 7 C -0.103 4.103 8 C 0.300 3.700 9 O -0.406 6.406 10 N -0.366 5.366 11 C 0.026 3.974 12 H 0.114 0.886 13 C -0.177 4.177 14 C -0.016 4.016 15 N -0.335 5.335 16 C -0.368 4.368 17 H 0.110 0.890 18 C -0.178 4.178 19 N -0.553 5.553 20 Si 0.716 3.284 21 H -0.212 1.212 22 H -0.231 1.231 23 H -0.205 1.205 24 C 0.000 4.000 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.164 0.836 29 H 0.218 0.782 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.308 18.558 9.876 22.605 hybrid contribution -0.387 -0.419 1.330 1.447 sum -8.695 18.139 11.206 23.027 Atomic orbital electron populations 1.20160 0.89398 1.02706 1.01607 1.20124 0.96964 0.91997 1.07846 1.21649 0.92645 0.99640 1.09232 1.23939 0.99708 0.80602 1.06201 1.84007 1.28629 1.22779 1.71108 1.21255 0.81221 0.94934 1.06816 1.20104 1.04095 0.89857 0.96284 1.20284 0.77075 0.81953 0.90710 1.90735 1.49140 1.54957 1.45781 1.45965 1.68769 1.12571 1.09275 1.22009 0.96825 0.96360 0.82183 0.88607 1.23142 0.96890 0.94987 1.02687 1.22059 0.86777 0.96925 0.95885 1.44791 1.15381 1.01307 1.72028 1.18665 1.06607 0.91949 1.19557 0.89047 1.25008 0.98565 0.95490 0.98751 1.69850 1.46969 1.00513 1.37939 0.86936 0.78527 0.76455 0.86504 1.21237 1.23076 1.20452 1.21751 0.94605 0.85124 0.98518 0.91631 0.91524 0.91820 0.83637 0.78199 0.86126 0.86954 0.76574 0.90933 0.89529 0.92030 0.95949 0.92719 0.94017 0.94695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.00 36.01 0.36 -0.41 16 2 C -0.17 -2.03 6.16 -104.74 -0.65 -2.67 16 3 C -0.21 -2.35 10.87 -39.70 -0.43 -2.78 16 4 C -0.04 -0.41 12.09 29.41 0.36 -0.05 16 5 O -0.17 -2.37 10.65 5.70 0.06 -2.31 16 6 C 0.01 0.11 5.81 -35.62 -0.21 -0.10 16 7 C -0.06 -0.70 5.85 -29.03 -0.17 -0.87 16 8 C 0.51 7.51 7.82 -10.98 -0.09 7.43 16 9 O -0.53 -9.88 15.72 5.55 0.09 -9.79 16 10 N -0.71 -10.06 5.10 -52.03 -0.27 -10.32 16 11 C 0.13 2.12 3.28 -66.09 -0.22 1.90 16 12 H 0.10 1.52 7.62 -51.93 -0.40 1.13 16 13 C -0.14 -2.12 6.69 -24.32 -0.16 -2.28 16 14 C 0.11 2.23 4.68 -2.27 -0.01 2.22 16 15 N -0.61 -14.59 3.21 -169.77 -0.54 -15.13 16 16 C -0.24 -6.88 10.57 -15.06 -0.16 -7.04 16 17 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 18 C 0.02 0.59 5.43 -17.43 -0.09 0.49 16 19 N -0.91 -28.10 13.97 55.49 0.78 -27.33 16 20 Si 0.89 22.13 24.27 -169.99 -4.13 18.01 16 21 H -0.29 -6.77 6.49 56.52 0.37 -6.41 16 22 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 23 H -0.28 -6.75 6.66 56.52 0.38 -6.37 16 24 C 0.13 2.60 6.98 -3.06 -0.02 2.58 16 25 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.61 7.79 -51.93 -0.40 0.20 16 28 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.12 0.92 7.78 -51.93 -0.40 0.51 16 31 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.40 4.80 8.63 -40.82 -0.35 4.45 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.36 6.63 -51.93 -0.34 1.02 16 36 H 0.02 0.47 5.57 -51.93 -0.29 0.18 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -35.42 322.81 -6.25 -41.66 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.61 Total: 1.93 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.49 Total: -1.58 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.03 Total: -52.78 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.15 Total: -12.10 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.13 Total: 18.01 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.42 -6.25 -41.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015676147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.811 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds