Wall clock time and date at job start Tue Mar 31 2020 01:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41382 * 126.58058 * 2 1 4 4 C 1.34510 * 106.84026 * 180.23393 * 3 2 1 5 5 O 1.34305 * 108.42288 * 359.77196 * 4 3 2 6 6 C 1.34306 * 109.47303 * 359.97438 * 5 4 3 7 7 C 1.50704 * 125.78659 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46866 * 270.01871 * 7 6 5 9 9 O 1.21285 * 120.00083 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99811 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99619 * 180.02562 * 10 8 7 12 12 H 1.08996 * 110.64604 * 325.69808 * 11 10 8 13 13 C 1.55160 * 110.72144 * 202.55780 * 11 10 8 14 14 C 1.55387 * 101.36919 * 277.04845 * 13 11 10 15 15 N 1.47426 * 104.86810 * 323.01421 * 14 13 11 16 16 C 1.36941 * 125.64319 * 204.16832 * 15 14 13 17 17 H 1.08001 * 119.99739 * 161.48110 * 16 15 14 18 18 C 1.38811 * 120.00074 * 341.47856 * 16 15 14 19 19 N 1.31623 * 119.99514 * 157.61254 * 18 16 15 20 20 Si 1.86789 * 120.00200 * 337.61301 * 18 16 15 21 21 H 1.48501 * 109.47403 * 84.53482 * 20 18 16 22 22 H 1.48500 * 109.47303 * 204.53560 * 20 18 16 23 23 H 1.48503 * 109.47313 * 324.53570 * 20 18 16 24 24 C 1.47018 * 108.70905 * 24.13175 * 15 14 13 25 25 H 1.09007 * 109.47052 * 270.16618 * 1 2 3 26 26 H 1.08995 * 109.47104 * 30.16111 * 1 2 3 27 27 H 1.08992 * 109.47117 * 150.16487 * 1 2 3 28 28 H 1.07992 * 126.57969 * 359.97438 * 3 2 1 29 29 H 1.08002 * 125.78939 * 179.78850 * 4 3 2 30 30 H 1.08998 * 109.46828 * 150.02716 * 7 6 5 31 31 H 1.08989 * 109.47532 * 30.02113 * 7 6 5 32 32 H 0.96996 * 119.99971 * 0.02562 * 10 8 7 33 33 H 1.09004 * 111.00070 * 35.21427 * 13 11 10 34 34 H 1.08991 * 111.00655 * 159.06376 * 13 11 10 35 35 H 1.08993 * 110.34462 * 204.16839 * 14 13 11 36 36 H 1.08998 * 110.44529 * 81.90804 * 14 13 11 37 37 H 0.96997 * 119.99266 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.88652 * 239.52825 * 24 15 14 39 39 H 1.08998 * 110.01346 * 118.42654 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6810 -0.0053 5 8 3.5848 -0.6617 -0.0034 6 6 2.3086 -1.0802 0.0037 7 6 1.8522 -2.5164 0.0073 8 6 1.6931 -2.9965 -1.4124 9 8 1.9277 -2.2464 -2.3361 10 7 1.2900 -4.2594 -1.6554 11 6 1.1359 -4.7262 -3.0355 12 1 0.7876 -3.9177 -3.6780 13 6 0.1663 -5.9358 -3.1008 14 6 1.1171 -7.1104 -2.7391 15 7 2.4006 -6.7690 -3.3790 16 6 3.3742 -7.6614 -3.7409 17 1 4.1303 -7.3748 -4.4568 18 6 3.3893 -8.9344 -3.1875 19 7 4.0034 -9.9165 -3.8128 20 14 2.5382 -9.2536 -1.5558 21 1 1.0962 -9.5178 -1.7929 22 1 3.1558 -10.4329 -0.8977 23 1 2.6858 -8.0640 -0.6793 24 6 2.4619 -5.3119 -3.5651 25 1 -0.3633 0.0030 1.0277 26 1 -0.3633 0.8885 -0.5163 27 1 -0.3633 -0.8914 -0.5112 28 1 2.0367 2.1689 -0.0004 29 1 4.5060 1.2923 -0.0099 30 1 0.8964 -2.5926 0.5258 31 1 2.5927 -3.1317 0.5181 32 1 1.1020 -4.8592 -0.9167 33 1 -0.6331 -5.8358 -2.3666 34 1 -0.2403 -6.0568 -4.1048 35 1 0.7310 -8.0476 -3.1398 36 1 1.2394 -7.1823 -1.6584 37 1 4.0142 -10.8059 -3.4259 38 1 2.5739 -5.0777 -4.6237 39 1 3.2999 -4.8991 -3.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015676147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:23 Heat of formation + Delta-G solvation = -20.898479 kcal Electronic energy + Delta-G solvation = -21637.283888 eV Core-core repulsion = 18353.333409 eV Total energy + Delta-G solvation = -3283.950479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.51862 -40.99287 -39.07915 -35.52727 -35.19747 -34.01059 -33.02550 -31.28421 -29.97898 -29.30344 -27.09434 -26.07194 -22.78967 -22.63190 -22.20046 -21.31667 -20.53139 -19.04899 -18.33076 -17.99219 -17.24306 -17.17352 -16.67456 -16.44255 -15.89997 -15.33398 -15.29746 -14.84461 -14.74462 -14.33406 -13.97034 -13.91100 -13.62549 -13.45593 -13.40628 -13.21752 -12.97315 -12.96494 -12.66178 -12.37651 -12.31024 -12.01966 -11.81251 -11.42680 -11.02964 -10.82248 -10.49050 -10.14491 -9.26569 -9.07956 -8.18651 -5.46986 0.75802 1.30940 1.40862 1.50718 1.58039 1.65381 2.05111 2.37726 2.42058 3.03512 3.30268 3.60839 3.64886 3.84666 3.95506 4.00940 4.08657 4.19789 4.28525 4.40687 4.43643 4.54641 4.65367 4.79986 4.83695 4.89691 4.92156 4.92949 4.98550 5.01119 5.17264 5.18070 5.34257 5.53689 5.65280 5.70890 6.08094 6.24289 6.52539 6.74648 7.21998 7.51606 8.06753 9.01565 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029318 B = 0.004003 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.823010 B = 6992.823628 C = 7184.190428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.176 4.176 3 C -0.226 4.226 4 C -0.045 4.045 5 O -0.198 6.198 6 C -0.025 4.025 7 C -0.056 4.056 8 C 0.514 3.486 9 O -0.576 6.576 10 N -0.706 5.706 11 C 0.145 3.855 12 H 0.103 0.897 13 C -0.117 4.117 14 C 0.098 3.902 15 N -0.624 5.624 16 C -0.244 4.244 17 H 0.047 0.953 18 C -0.041 4.041 19 N -0.960 5.960 20 Si 0.957 3.043 21 H -0.259 1.259 22 H -0.311 1.311 23 H -0.262 1.262 24 C 0.123 3.877 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.168 0.832 29 H 0.232 0.768 30 H 0.160 0.840 31 H 0.125 0.875 32 H 0.414 0.586 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.035 0.965 37 H 0.263 0.737 38 H 0.029 0.971 39 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.732 19.743 13.153 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.178 4.178 3 C -0.245 4.245 4 C -0.112 4.112 5 O -0.095 6.095 6 C -0.075 4.075 7 C -0.095 4.095 8 C 0.302 3.698 9 O -0.455 6.455 10 N -0.358 5.358 11 C 0.039 3.961 12 H 0.121 0.879 13 C -0.155 4.155 14 C -0.026 4.026 15 N -0.351 5.351 16 C -0.372 4.372 17 H 0.065 0.935 18 C -0.235 4.235 19 N -0.607 5.607 20 Si 0.784 3.216 21 H -0.184 1.184 22 H -0.240 1.240 23 H -0.187 1.187 24 C -0.003 4.003 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.185 0.815 29 H 0.248 0.752 30 H 0.177 0.823 31 H 0.143 0.857 32 H 0.251 0.749 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -11.229 19.883 12.454 26.010 hybrid contribution 0.601 -0.723 0.425 1.032 sum -10.627 19.160 12.879 25.415 Atomic orbital electron populations 1.20235 0.87640 1.02909 1.03003 1.20606 0.98405 0.92066 1.06676 1.22050 0.92658 1.00667 1.09161 1.24697 1.01258 0.79992 1.05206 1.83984 1.29538 1.24178 1.71782 1.21714 0.81200 0.96174 1.08418 1.20201 1.06419 0.88983 0.93900 1.20925 0.75607 0.81471 0.91809 1.90717 1.51016 1.56194 1.47550 1.45864 1.68415 1.12773 1.08757 1.21748 0.94078 0.96760 0.83487 0.87871 1.23101 0.96467 0.91252 1.04681 1.22270 0.85964 0.98502 0.95891 1.44833 1.16006 1.02071 1.72208 1.18542 1.06985 0.93058 1.18660 0.93518 1.25765 1.00426 0.94998 1.02309 1.70000 1.49866 1.01059 1.39727 0.85791 0.78588 0.76333 0.80858 1.18408 1.23974 1.18654 1.21845 0.96926 0.83641 0.97875 0.89535 0.91035 0.91904 0.81472 0.75150 0.82260 0.85679 0.74904 0.86298 0.88658 0.93614 0.94794 0.92792 0.95293 0.96801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.00 71.24 0.71 -0.59 16 2 C -0.18 -3.92 6.16 -19.94 -0.12 -4.04 16 3 C -0.23 -4.63 10.87 22.19 0.24 -4.39 16 4 C -0.04 -0.93 12.09 66.97 0.81 -0.13 16 5 O -0.20 -5.42 10.65 -2.53 -0.03 -5.44 16 6 C -0.03 -0.63 5.81 24.83 0.14 -0.48 16 7 C -0.06 -1.09 5.85 29.10 0.17 -0.92 16 8 C 0.51 13.96 7.82 87.66 0.69 14.64 16 9 O -0.58 -21.02 15.72 -3.04 -0.05 -21.07 16 10 N -0.71 -17.68 5.10 -436.90 -2.23 -19.91 16 11 C 0.15 4.34 3.28 46.18 0.15 4.49 16 12 H 0.10 3.04 7.62 -2.39 -0.02 3.02 16 13 C -0.12 -3.09 6.69 32.16 0.22 -2.88 16 14 C 0.10 3.73 4.68 87.02 0.41 4.14 16 15 N -0.62 -29.90 3.21 -691.04 -2.22 -32.12 16 16 C -0.24 -14.43 10.57 84.03 0.89 -13.54 16 17 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 18 C -0.04 -2.42 5.43 84.86 0.46 -1.96 16 19 N -0.96 -61.36 13.97 21.65 0.30 -61.06 16 20 Si 0.96 45.30 24.27 68.60 1.66 46.96 16 21 H -0.26 -11.10 6.49 99.48 0.65 -10.45 16 22 H -0.31 -15.08 7.11 99.48 0.71 -14.37 16 23 H -0.26 -11.54 6.66 99.48 0.66 -10.88 16 24 C 0.12 5.10 6.98 86.73 0.61 5.70 16 25 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.01 7.79 -2.39 -0.02 0.99 16 28 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.23 2.85 8.06 -2.91 -0.02 2.82 16 30 H 0.16 1.75 7.78 -2.39 -0.02 1.73 16 31 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.41 8.10 8.63 -92.71 -0.80 7.30 16 33 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.05 1.90 6.63 -2.39 -0.02 1.88 16 36 H 0.03 1.25 5.57 -2.39 -0.01 1.24 16 37 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 38 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.01 0.63 8.04 -2.39 -0.02 0.61 16 Total: -1.00 -81.16 322.81 2.97 -78.19 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.15 Total: 14.39 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.37 Total: 0.06 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -4.14 Total: -113.09 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.51 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.66 Total: 46.96 kcal Total: -81.16 2.97 -78.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015676147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.290 kcal (2) G-P(sol) polarization free energy of solvation -81.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds