Wall clock time and date at job start Tue Mar 31 2020 01:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41382 * 126.58161 * 2 1 4 4 C 1.34505 * 106.84567 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42111 * 359.73124 * 4 3 2 6 6 C 1.34304 * 109.47132 * 0.43938 * 5 4 3 7 7 C 1.50700 * 125.78579 * 179.82898 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.68837 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 H 1.09000 * 110.64039 * 34.30346 * 11 10 8 13 13 C 1.55155 * 110.72215 * 157.44231 * 11 10 8 14 14 C 1.55118 * 101.48729 * 153.73736 * 13 11 10 15 15 N 1.47434 * 104.94460 * 323.22482 * 14 13 11 16 16 C 1.36929 * 125.65063 * 203.96851 * 15 14 13 17 17 H 1.08000 * 120.00194 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00219 * 0.03835 * 16 15 14 19 19 N 1.31622 * 119.99833 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00231 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47060 * 60.00171 * 20 18 16 22 22 H 1.48497 * 109.47527 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47414 * 300.00204 * 20 18 16 24 24 C 1.47028 * 108.69740 * 24.00205 * 15 14 13 25 25 H 1.08998 * 109.47554 * 270.04736 * 1 2 3 26 26 H 1.08995 * 109.46894 * 30.05613 * 1 2 3 27 27 H 1.09001 * 109.46766 * 150.04953 * 1 2 3 28 28 H 1.08007 * 126.57476 * 359.96955 * 3 2 1 29 29 H 1.07999 * 125.79214 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47210 * 149.69130 * 7 6 5 31 31 H 1.08994 * 109.47551 * 29.68783 * 7 6 5 32 32 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 33 33 H 1.08997 * 111.00739 * 271.94039 * 13 11 10 34 34 H 1.08997 * 111.00252 * 35.79486 * 13 11 10 35 35 H 1.08998 * 110.42537 * 204.29668 * 14 13 11 36 36 H 1.09000 * 110.20884 * 82.04169 * 14 13 11 37 37 H 0.96997 * 120.00265 * 180.02562 * 19 18 16 38 38 H 1.09006 * 109.87702 * 239.52377 * 24 15 14 39 39 H 1.08996 * 109.88016 * 118.36601 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0069 6 6 2.3087 -1.0801 0.0007 7 6 1.8523 -2.5164 0.0011 8 6 1.7006 -2.9956 -1.4196 9 8 1.9401 -2.2450 -2.3417 10 7 1.3048 -4.2602 -1.6656 11 6 1.1632 -4.7280 -3.0467 12 1 1.9133 -4.2651 -3.6879 13 6 1.2616 -6.2749 -3.1152 14 6 0.4418 -6.5801 -4.3962 15 7 -0.6645 -5.6056 -4.3808 16 6 -1.8702 -5.7570 -5.0118 17 1 -2.6185 -4.9816 -4.9399 18 6 -2.1309 -6.9073 -5.7439 19 7 -1.2193 -7.8527 -5.8309 20 14 -3.7760 -7.1142 -6.6041 21 1 -3.9636 -6.0148 -7.5847 22 1 -3.8035 -8.4188 -7.3128 23 1 -4.8687 -7.0730 -5.5993 24 6 -0.2582 -4.4440 -3.5763 25 1 -0.3634 0.0008 1.0276 26 1 -0.3633 0.8894 -0.5147 27 1 -0.3633 -0.8905 -0.5131 28 1 2.0366 2.1690 -0.0005 29 1 4.5060 1.2924 0.0011 30 1 0.8938 -2.5930 0.5146 31 1 2.5902 -3.1320 0.5154 32 1 1.1136 -4.8607 -0.9282 33 1 2.2974 -6.5960 -3.2251 34 1 0.8024 -6.7347 -2.2402 35 1 0.0516 -7.5974 -4.3647 36 1 1.0606 -6.4375 -5.2821 37 1 -1.4013 -8.6563 -6.3427 38 1 -0.9459 -4.3130 -2.7408 39 1 -0.2505 -3.5479 -4.1968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015676148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:30 Heat of formation + Delta-G solvation = 2.836796 kcal Electronic energy + Delta-G solvation = -21365.643138 eV Core-core repulsion = 18082.721898 eV Total energy + Delta-G solvation = -3282.921240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.64564 -39.58511 -37.22241 -34.32134 -34.01539 -32.38387 -31.64040 -29.32788 -28.83741 -27.16695 -25.97710 -24.38108 -21.64356 -21.05231 -20.49206 -19.80484 -19.53149 -17.38053 -17.08010 -16.78348 -15.95350 -15.62819 -15.27388 -14.76729 -14.54292 -13.98326 -13.67330 -13.46734 -13.17212 -13.01907 -12.80547 -12.55194 -12.40212 -12.23330 -11.88477 -11.62671 -11.48997 -11.11494 -10.94986 -10.78448 -10.50132 -10.15320 -9.83129 -9.74871 -9.64293 -9.56891 -8.76551 -8.65976 -8.38787 -6.84758 -5.66372 -3.07998 1.64677 2.51120 2.73321 2.90386 3.40637 3.44106 3.45518 3.48328 4.47025 4.49686 4.80638 4.84189 4.89839 5.04855 5.17630 5.35198 5.40156 5.44607 5.51961 5.56390 5.71597 5.78642 5.79754 5.81742 5.98315 6.13315 6.19201 6.38344 6.47640 6.50496 6.53433 6.74483 6.99944 7.09681 7.46488 7.60468 7.67954 7.82814 8.32669 8.38996 9.21049 9.81606 10.45811 11.37809 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033303 B = 0.003459 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.556720 B = 8092.256200 C = 8622.973902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.165 4.165 3 C -0.211 4.211 4 C -0.039 4.039 5 O -0.172 6.172 6 C 0.006 3.994 7 C -0.062 4.062 8 C 0.510 3.490 9 O -0.529 6.529 10 N -0.716 5.716 11 C 0.131 3.869 12 H 0.091 0.909 13 C -0.149 4.149 14 C 0.153 3.847 15 N -0.603 5.603 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.924 5.924 20 Si 0.916 3.084 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.129 3.871 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.146 0.854 29 H 0.201 0.799 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.399 0.601 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.015 0.985 37 H 0.253 0.747 38 H 0.025 0.975 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.806 11.190 15.683 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.166 4.166 3 C -0.230 4.230 4 C -0.107 4.107 5 O -0.068 6.068 6 C -0.045 4.045 7 C -0.102 4.102 8 C 0.295 3.705 9 O -0.404 6.404 10 N -0.367 5.367 11 C 0.027 3.973 12 H 0.109 0.891 13 C -0.189 4.189 14 C 0.028 3.972 15 N -0.330 5.330 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.747 3.253 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.002 3.998 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.164 0.836 29 H 0.218 0.782 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.233 0.767 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.108 11.383 14.857 20.397 hybrid contribution -0.930 -0.046 -0.186 0.950 sum 7.178 11.338 14.671 19.883 Atomic orbital electron populations 1.20187 0.89264 1.03020 1.01656 1.20163 0.97080 0.91999 1.07379 1.21672 0.92666 0.99712 1.08934 1.23905 0.99666 0.80586 1.06541 1.83974 1.28669 1.22793 1.71376 1.21258 0.81148 0.95027 1.07033 1.20104 1.04028 0.89680 0.96341 1.20337 0.77295 0.82237 0.90633 1.90750 1.49280 1.54454 1.45959 1.46041 1.68757 1.12507 1.09387 1.22111 0.98459 0.95482 0.81277 0.89101 1.23360 1.00568 0.92805 1.02137 1.21980 0.87069 0.97900 0.90236 1.44442 1.14092 1.15949 1.58518 1.19046 0.90273 1.02016 1.23691 0.90513 1.24785 0.98432 0.96821 1.00626 1.69756 1.33054 1.08931 1.45546 0.86125 0.82929 0.76997 0.79289 1.21186 1.21546 1.21154 1.21597 0.92268 0.91606 0.94327 0.91572 0.91445 0.91583 0.83619 0.78232 0.86065 0.87192 0.76685 0.91705 0.91622 0.87154 0.96717 0.93635 0.95693 0.95581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.99 36.01 0.36 -0.54 16 2 C -0.16 -2.08 6.16 -104.74 -0.65 -2.72 16 3 C -0.21 -2.39 10.87 -39.71 -0.43 -2.82 16 4 C -0.04 -0.42 12.09 29.41 0.36 -0.07 16 5 O -0.17 -2.29 10.65 5.70 0.06 -2.23 16 6 C 0.01 0.07 5.81 -35.62 -0.21 -0.13 16 7 C -0.06 -0.65 5.85 -29.03 -0.17 -0.82 16 8 C 0.51 7.53 7.82 -10.98 -0.09 7.45 16 9 O -0.53 -10.35 15.72 5.55 0.09 -10.26 16 10 N -0.72 -10.06 5.12 -52.03 -0.27 -10.32 16 11 C 0.13 2.38 3.27 -66.10 -0.22 2.17 16 12 H 0.09 1.79 7.62 -51.93 -0.40 1.40 16 13 C -0.15 -2.70 6.73 -24.47 -0.16 -2.86 16 14 C 0.15 3.68 5.89 -2.41 -0.01 3.67 16 15 N -0.60 -15.67 3.40 -169.93 -0.58 -16.24 16 16 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 19 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 20 Si 0.92 22.13 29.55 -169.99 -5.02 17.10 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.13 2.84 7.00 -3.06 -0.02 2.81 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 28 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.12 0.95 7.76 -51.93 -0.40 0.55 16 31 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.40 4.27 8.54 -40.82 -0.35 3.92 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 35 H 0.11 2.94 5.87 -51.93 -0.30 2.64 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.03 0.54 8.03 -51.93 -0.42 0.12 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 327.80 15.07 4.94 4.94 Total: -1.00 -34.52 327.80 -7.33 -41.85 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.62 Total: 2.11 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.49 Total: -0.70 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.28 Total: -52.81 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.15 Total: -12.49 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.52 -7.33 -41.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015676148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.684 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds