Wall clock time and date at job start Tue Mar 31 2020 01:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41382 * 126.58161 * 2 1 4 4 C 1.34505 * 106.84567 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42111 * 359.73124 * 4 3 2 6 6 C 1.34304 * 109.47132 * 0.43938 * 5 4 3 7 7 C 1.50700 * 125.78579 * 179.82898 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.68837 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 H 1.09000 * 110.64039 * 34.30346 * 11 10 8 13 13 C 1.55155 * 110.72215 * 157.44231 * 11 10 8 14 14 C 1.55118 * 101.48729 * 153.73736 * 13 11 10 15 15 N 1.47434 * 104.94460 * 323.22482 * 14 13 11 16 16 C 1.36929 * 125.65063 * 203.96851 * 15 14 13 17 17 H 1.08000 * 120.00194 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00219 * 0.03835 * 16 15 14 19 19 N 1.31622 * 119.99833 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00231 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47060 * 60.00171 * 20 18 16 22 22 H 1.48497 * 109.47527 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47414 * 300.00204 * 20 18 16 24 24 C 1.47028 * 108.69740 * 24.00205 * 15 14 13 25 25 H 1.08998 * 109.47554 * 270.04736 * 1 2 3 26 26 H 1.08995 * 109.46894 * 30.05613 * 1 2 3 27 27 H 1.09001 * 109.46766 * 150.04953 * 1 2 3 28 28 H 1.08007 * 126.57476 * 359.96955 * 3 2 1 29 29 H 1.07999 * 125.79214 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47210 * 149.69130 * 7 6 5 31 31 H 1.08994 * 109.47551 * 29.68783 * 7 6 5 32 32 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 33 33 H 1.08997 * 111.00739 * 271.94039 * 13 11 10 34 34 H 1.08997 * 111.00252 * 35.79486 * 13 11 10 35 35 H 1.08998 * 110.42537 * 204.29668 * 14 13 11 36 36 H 1.09000 * 110.20884 * 82.04169 * 14 13 11 37 37 H 0.96997 * 120.00265 * 180.02562 * 19 18 16 38 38 H 1.09006 * 109.87702 * 239.52377 * 24 15 14 39 39 H 1.08996 * 109.88016 * 118.36601 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0069 6 6 2.3087 -1.0801 0.0007 7 6 1.8523 -2.5164 0.0011 8 6 1.7006 -2.9956 -1.4196 9 8 1.9401 -2.2450 -2.3417 10 7 1.3048 -4.2602 -1.6656 11 6 1.1632 -4.7280 -3.0467 12 1 1.9133 -4.2651 -3.6879 13 6 1.2616 -6.2749 -3.1152 14 6 0.4418 -6.5801 -4.3962 15 7 -0.6645 -5.6056 -4.3808 16 6 -1.8702 -5.7570 -5.0118 17 1 -2.6185 -4.9816 -4.9399 18 6 -2.1309 -6.9073 -5.7439 19 7 -1.2193 -7.8527 -5.8309 20 14 -3.7760 -7.1142 -6.6041 21 1 -3.9636 -6.0148 -7.5847 22 1 -3.8035 -8.4188 -7.3128 23 1 -4.8687 -7.0730 -5.5993 24 6 -0.2582 -4.4440 -3.5763 25 1 -0.3634 0.0008 1.0276 26 1 -0.3633 0.8894 -0.5147 27 1 -0.3633 -0.8905 -0.5131 28 1 2.0366 2.1690 -0.0005 29 1 4.5060 1.2924 0.0011 30 1 0.8938 -2.5930 0.5146 31 1 2.5902 -3.1320 0.5154 32 1 1.1136 -4.8607 -0.9282 33 1 2.2974 -6.5960 -3.2251 34 1 0.8024 -6.7347 -2.2402 35 1 0.0516 -7.5974 -4.3647 36 1 1.0606 -6.4375 -5.2821 37 1 -1.4013 -8.6563 -6.3427 38 1 -0.9459 -4.3130 -2.7408 39 1 -0.2505 -3.5479 -4.1968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015676148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:29 Heat of formation + Delta-G solvation = -20.722980 kcal Electronic energy + Delta-G solvation = -21366.664766 eV Core-core repulsion = 18082.721898 eV Total energy + Delta-G solvation = -3283.942868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.50620 -40.88127 -38.88783 -35.63322 -35.19422 -33.86731 -32.92455 -31.03775 -29.88491 -28.72662 -27.11045 -26.19757 -22.68831 -22.31777 -22.06418 -21.36805 -20.48932 -19.04858 -18.24390 -17.99561 -17.29338 -16.75191 -16.57878 -16.41492 -15.97743 -15.47191 -14.96662 -14.58724 -14.38238 -14.18716 -13.94676 -13.76699 -13.60995 -13.50182 -13.36455 -13.07811 -12.94311 -12.69731 -12.49782 -12.34673 -12.19224 -12.06519 -11.84253 -11.43076 -11.01298 -10.76279 -10.49322 -10.12640 -9.25825 -8.92886 -7.79529 -5.24918 0.76231 1.46675 1.50091 1.56439 1.60235 1.64854 2.04700 2.34146 2.51010 3.30513 3.60040 3.70342 3.76493 3.99883 4.01199 4.03771 4.08467 4.24064 4.31730 4.46245 4.58816 4.64042 4.74562 4.80238 4.89938 4.90413 4.95650 5.01642 5.05506 5.16361 5.34067 5.43251 5.53015 5.59978 5.68754 5.76985 6.23616 6.28729 6.57732 7.08666 7.26466 7.74318 8.37494 9.22003 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033303 B = 0.003459 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.556720 B = 8092.256200 C = 8622.973902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.182 4.182 3 C -0.230 4.230 4 C -0.040 4.040 5 O -0.191 6.191 6 C -0.022 4.022 7 C -0.051 4.051 8 C 0.510 3.490 9 O -0.582 6.582 10 N -0.700 5.700 11 C 0.149 3.851 12 H 0.074 0.926 13 C -0.126 4.126 14 C 0.152 3.848 15 N -0.624 5.624 16 C -0.246 4.246 17 H 0.076 0.924 18 C -0.062 4.062 19 N -0.946 5.946 20 Si 0.982 3.018 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.129 3.871 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.164 0.836 29 H 0.236 0.764 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.420 0.580 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.084 0.916 36 H -0.014 1.014 37 H 0.250 0.750 38 H 0.034 0.966 39 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.858 11.498 17.764 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.184 4.184 3 C -0.249 4.249 4 C -0.107 4.107 5 O -0.088 6.088 6 C -0.072 4.072 7 C -0.090 4.090 8 C 0.298 3.702 9 O -0.461 6.461 10 N -0.353 5.353 11 C 0.042 3.958 12 H 0.092 0.908 13 C -0.165 4.165 14 C 0.026 3.974 15 N -0.350 5.350 16 C -0.375 4.375 17 H 0.094 0.906 18 C -0.255 4.255 19 N -0.596 5.596 20 Si 0.810 3.190 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.199 1.199 24 C 0.002 3.998 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.182 0.818 29 H 0.252 0.748 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.258 0.742 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.004 0.996 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 8.161 11.686 16.997 22.183 hybrid contribution -0.928 -0.047 -0.855 1.263 sum 7.234 11.638 16.142 21.174 Atomic orbital electron populations 1.20220 0.88338 1.02519 1.02924 1.20592 0.98098 0.92623 1.07048 1.22039 0.92930 1.00522 1.09392 1.24692 1.01006 0.80057 1.04923 1.83962 1.29086 1.23979 1.71746 1.21694 0.81211 0.96195 1.08097 1.20187 1.06580 0.88921 0.93326 1.21105 0.75630 0.81494 0.91995 1.90735 1.51499 1.55820 1.48046 1.45787 1.68360 1.12981 1.08163 1.21620 0.95355 0.95506 0.83273 0.90822 1.23156 1.01222 0.92478 0.99614 1.21823 0.86950 0.96284 0.92298 1.44730 1.13950 1.17571 1.58784 1.19393 0.91408 1.02284 1.24429 0.90598 1.25626 1.01910 0.96552 1.01402 1.69999 1.34619 1.09068 1.45875 0.85101 0.79053 0.76640 0.78205 1.20883 1.21554 1.19947 1.21683 0.94901 0.89485 0.93703 0.89355 0.91390 0.92617 0.81798 0.74753 0.82984 0.83963 0.74188 0.88900 0.89366 0.89833 0.99649 0.94065 0.94831 0.98029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 9.99 71.24 0.71 -0.94 16 2 C -0.18 -4.36 6.16 -19.94 -0.12 -4.48 16 3 C -0.23 -4.89 10.87 22.19 0.24 -4.65 16 4 C -0.04 -0.80 12.09 66.96 0.81 0.01 16 5 O -0.19 -4.83 10.65 -2.54 -0.03 -4.86 16 6 C -0.02 -0.54 5.81 24.83 0.14 -0.40 16 7 C -0.05 -0.94 5.85 29.10 0.17 -0.77 16 8 C 0.51 14.23 7.82 87.66 0.69 14.92 16 9 O -0.58 -22.74 15.72 -3.04 -0.05 -22.79 16 10 N -0.70 -18.06 5.12 -436.93 -2.24 -20.30 16 11 C 0.15 5.26 3.27 46.18 0.15 5.41 16 12 H 0.07 2.91 7.62 -2.39 -0.02 2.89 16 13 C -0.13 -4.33 6.73 32.06 0.22 -4.11 16 14 C 0.15 7.40 5.89 86.93 0.51 7.92 16 15 N -0.62 -32.99 3.40 -691.54 -2.35 -35.34 16 16 C -0.25 -14.15 10.27 84.04 0.86 -13.29 16 17 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 18 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 19 N -0.95 -55.97 10.09 21.65 0.22 -55.75 16 20 Si 0.98 45.78 29.55 68.60 2.03 47.80 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.13 5.71 7.00 86.73 0.61 6.32 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.20 7.78 -2.39 -0.02 1.18 16 28 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.24 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.15 1.83 7.76 -2.38 -0.02 1.81 16 31 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.42 7.42 8.54 -92.71 -0.79 6.63 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.09 2.67 8.00 -2.39 -0.02 2.65 16 35 H 0.08 4.56 5.87 -2.39 -0.01 4.54 16 36 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 37 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.03 1.43 8.03 -2.38 -0.02 1.41 16 39 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -77.84 327.80 3.31 -74.54 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.26 Total: 13.83 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.45 Total: 2.87 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -4.37 Total: -111.39 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.07 Total: -27.65 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -77.84 3.31 -74.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015676148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.815 kcal (2) G-P(sol) polarization free energy of solvation -77.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds