Wall clock time and date at job start Tue Mar 31 2020 00:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34180 * 125.43698 * 2 1 4 4 C 1.47021 * 105.95450 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19456 * 179.97438 * 4 3 2 6 6 O 1.21609 * 119.99978 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99606 * 0.02568 * 5 4 3 8 8 C 1.47024 * 125.64847 * 359.68776 * 7 5 4 9 9 C 1.54327 * 107.26774 * 179.20685 * 8 7 5 10 10 C 1.55155 * 102.94571 * 337.80617 * 9 8 7 11 11 H 1.08997 * 111.00368 * 277.43464 * 10 9 8 12 12 N 1.46494 * 111.00703 * 153.57480 * 10 9 8 13 13 C 1.36939 * 120.00123 * 161.35006 * 12 10 9 14 14 H 1.07994 * 119.99672 * 0.02562 * 13 12 10 15 15 C 1.38816 * 119.99716 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99557 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00061 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47014 * 90.00060 * 17 15 13 19 19 H 1.48502 * 109.46615 * 209.99595 * 17 15 13 20 20 H 1.48493 * 109.47333 * 329.99844 * 17 15 13 21 21 C 1.47426 * 125.64645 * 179.97438 * 7 5 4 22 22 C 1.36418 * 105.61604 * 0.25850 * 4 3 2 23 23 C 1.50698 * 125.80258 * 179.74091 * 22 4 3 24 24 O 1.33654 * 108.39540 * 359.57278 * 22 4 3 25 25 H 1.09004 * 109.46893 * 90.00601 * 1 2 3 26 26 H 1.08996 * 109.47310 * 210.00449 * 1 2 3 27 27 H 1.09003 * 109.47746 * 330.00898 * 1 2 3 28 28 H 1.07996 * 127.02691 * 0.02562 * 3 2 1 29 29 H 1.08995 * 109.88316 * 298.62177 * 8 7 5 30 30 H 1.09002 * 109.88101 * 59.79072 * 8 7 5 31 31 H 1.08999 * 110.71564 * 219.44370 * 9 8 7 32 32 H 1.08996 * 110.72159 * 96.17410 * 9 8 7 33 33 H 0.97002 * 119.99809 * 341.35145 * 12 10 9 34 34 H 0.96999 * 119.99487 * 179.97438 * 16 15 13 35 35 H 1.09002 * 110.36518 * 322.69812 * 21 7 5 36 36 H 1.08995 * 110.36673 * 84.90922 * 21 7 5 37 37 H 1.09000 * 109.47404 * 89.99491 * 23 22 4 38 38 H 1.08999 * 109.46918 * 209.99660 * 23 22 4 39 39 H 1.09001 * 109.46888 * 329.99844 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6709 0.6029 0.0006 5 6 4.9025 1.4126 0.0003 6 8 5.9891 0.8666 0.0005 7 7 4.8243 2.7581 -0.0001 8 6 3.5818 3.5442 -0.0068 9 6 3.9825 5.0344 0.0158 10 6 5.4174 4.9996 0.6051 11 1 5.3916 4.9478 1.6935 12 7 6.1981 6.1545 0.1547 13 6 7.3274 6.5249 0.8350 14 1 7.6426 5.9654 1.7032 15 6 8.0668 7.6195 0.4084 16 7 9.1520 7.9759 1.0626 17 14 7.5211 8.5876 -1.0930 18 1 6.6092 9.6816 -0.6721 19 1 8.7105 9.1668 -1.7676 20 1 6.8098 7.6844 -2.0328 21 6 5.9704 3.6853 0.0002 22 6 3.5790 -0.7582 -0.0050 23 6 4.7389 -1.7201 -0.0122 24 8 2.2852 -1.0935 0.0007 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3635 0.8900 0.5137 28 1 1.9595 2.1230 0.0004 29 1 3.0109 3.3275 -0.9096 30 1 2.9880 3.3065 0.8759 31 1 3.3140 5.6036 0.6617 32 1 3.9897 5.4471 -0.9930 33 1 5.9151 6.6568 -0.6254 34 1 9.6689 8.7405 0.7643 35 1 6.7763 3.2921 0.6199 36 1 6.3228 3.8531 -1.0175 37 1 5.0214 -1.9564 1.0137 38 1 4.4491 -2.6349 -0.5291 39 1 5.5854 -1.2648 -0.5263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018491937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:34 Heat of formation + Delta-G solvation = -0.774009 kcal Electronic energy + Delta-G solvation = -21481.196504 eV Core-core repulsion = 18198.118687 eV Total energy + Delta-G solvation = -3283.077816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.10 seconds Orbital eigenvalues (eV) -42.73511 -39.60609 -37.33543 -34.38013 -33.30959 -32.99222 -31.62568 -30.04347 -29.64674 -27.89665 -25.60352 -24.12422 -22.87396 -21.98046 -21.22571 -20.09324 -18.48847 -17.68393 -16.98097 -16.67254 -16.03583 -15.96847 -15.25130 -14.50323 -14.01887 -13.89438 -13.80625 -13.56113 -13.50950 -13.19078 -13.10446 -12.83424 -12.70951 -12.58394 -12.46572 -12.31317 -11.71533 -11.66179 -11.23387 -10.89699 -10.76206 -10.50556 -10.09609 -9.83860 -9.77986 -9.64414 -9.05070 -8.62392 -8.28935 -7.38929 -5.82981 -3.21320 1.29901 1.88809 2.55454 3.20204 3.33528 3.35557 3.42180 3.45524 4.28191 4.53101 4.60786 4.67240 4.77940 4.95918 5.06537 5.09141 5.12265 5.22057 5.26866 5.35158 5.38952 5.43799 5.52247 5.60949 5.66501 5.77613 5.82412 5.88530 6.04934 6.11104 6.19029 6.25946 6.47610 6.55608 6.76557 6.93947 7.75267 7.91621 8.35072 8.37470 9.11937 9.83654 10.01430 11.34760 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031271 B = 0.003803 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.172137 B = 7361.057115 C = 7983.738506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.020 4.020 3 C -0.193 4.193 4 C -0.233 4.233 5 C 0.599 3.401 6 O -0.545 6.545 7 N -0.606 5.606 8 C 0.103 3.897 9 C -0.146 4.146 10 C 0.177 3.823 11 H 0.073 0.927 12 N -0.736 5.736 13 C -0.253 4.253 14 H 0.093 0.907 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.885 3.115 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.085 3.915 22 C 0.072 3.928 23 C -0.080 4.080 24 O -0.177 6.177 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.165 0.835 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.364 0.636 34 H 0.261 0.739 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.425 -15.985 -3.237 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 C -0.212 4.212 4 C -0.237 4.237 5 C 0.389 3.611 6 O -0.425 6.425 7 N -0.339 5.339 8 C -0.021 4.021 9 C -0.184 4.184 10 C 0.066 3.934 11 H 0.091 0.909 12 N -0.378 5.378 13 C -0.383 4.383 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.576 5.576 17 Si 0.715 3.285 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.040 4.040 22 C 0.019 3.981 23 C -0.136 4.136 24 O -0.074 6.074 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.183 0.817 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.198 0.802 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.743 -16.558 -3.059 25.196 hybrid contribution -0.287 1.017 -1.124 1.543 sum -19.030 -15.541 -4.183 24.923 Atomic orbital electron populations 1.20313 0.84796 1.04147 1.03573 1.22262 0.93947 0.83792 1.06861 1.23118 0.90867 0.99971 1.07238 1.21149 0.93907 0.93160 1.15511 1.16835 0.87275 0.80465 0.76545 1.90750 1.28950 1.70987 1.51847 1.48252 1.09075 1.04430 1.72186 1.22274 0.87345 0.91490 1.00949 1.22985 0.98886 0.94129 1.02440 1.21273 0.88383 0.86211 0.97572 0.90876 1.42647 1.29664 1.31559 1.33897 1.19085 0.99511 1.10493 1.09171 0.88956 1.24690 0.96990 0.98395 0.98654 1.69705 1.17433 1.29040 1.41398 0.86553 0.77848 0.80431 0.83694 1.20941 1.21609 1.20286 1.23329 0.88622 0.90146 1.01932 1.22753 0.82790 0.94057 0.98524 1.20600 0.92173 0.96483 1.04388 1.83675 1.16209 1.35693 1.71828 0.90080 0.90549 0.89175 0.81740 0.91550 0.91232 0.89850 0.90631 0.80234 0.92896 0.90494 0.91494 0.89391 0.90611 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.40 36.00 0.37 -0.05 16 2 C -0.02 -0.21 7.28 -35.74 -0.26 -0.47 16 3 C -0.19 -2.19 9.30 -37.45 -0.35 -2.54 16 4 C -0.23 -3.33 6.25 -103.27 -0.64 -3.97 16 5 C 0.60 10.27 7.84 -12.54 -0.10 10.17 16 6 O -0.55 -10.81 15.11 5.27 0.08 -10.73 16 7 N -0.61 -9.88 3.33 -171.81 -0.57 -10.45 16 8 C 0.10 1.29 5.00 -3.06 -0.02 1.27 16 9 C -0.15 -2.01 6.58 -24.90 -0.16 -2.17 16 10 C 0.18 3.28 3.68 -65.79 -0.24 3.04 16 11 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 12 N -0.74 -16.75 5.08 -51.36 -0.26 -17.01 16 13 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 14 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 15 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 16 N -0.93 -28.86 13.97 55.49 0.78 -28.09 16 17 Si 0.88 21.58 27.74 -169.99 -4.71 16.86 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 21 C 0.08 1.59 6.60 -2.54 -0.02 1.57 16 22 C 0.07 0.92 7.37 -34.97 -0.26 0.67 16 23 C -0.08 -0.86 9.89 36.00 0.36 -0.50 16 24 O -0.18 -2.10 10.52 7.64 0.08 -2.02 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.17 1.52 4.87 -52.49 -0.26 1.27 16 29 H 0.07 0.72 7.03 -51.93 -0.37 0.36 16 30 H 0.07 0.76 6.85 -51.93 -0.36 0.40 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.02 8.00 -51.93 -0.42 0.61 16 33 H 0.36 8.05 5.57 -40.82 -0.23 7.82 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.08 1.60 8.04 -51.93 -0.42 1.18 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.11 1.36 6.49 -51.93 -0.34 1.02 16 LS Contribution 320.97 15.07 4.84 4.84 Total: -1.00 -33.72 320.97 -6.69 -40.41 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.35 Total: 6.15 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.57 Total: 0.05 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.06 Total: -55.55 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.16 Total: -12.75 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.72 -6.69 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018491937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.635 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.10 seconds