Wall clock time and date at job start Tue Mar 31 2020 00:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34180 * 125.43698 * 2 1 4 4 C 1.47021 * 105.95450 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19456 * 179.97438 * 4 3 2 6 6 O 1.21609 * 119.99978 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99606 * 0.02568 * 5 4 3 8 8 C 1.47024 * 125.64847 * 359.68776 * 7 5 4 9 9 C 1.54327 * 107.26774 * 179.20685 * 8 7 5 10 10 C 1.55155 * 102.94571 * 337.80617 * 9 8 7 11 11 H 1.08997 * 111.00368 * 277.43464 * 10 9 8 12 12 N 1.46494 * 111.00703 * 153.57480 * 10 9 8 13 13 C 1.36939 * 120.00123 * 161.35006 * 12 10 9 14 14 H 1.07994 * 119.99672 * 0.02562 * 13 12 10 15 15 C 1.38816 * 119.99716 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99557 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00061 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47014 * 90.00060 * 17 15 13 19 19 H 1.48502 * 109.46615 * 209.99595 * 17 15 13 20 20 H 1.48493 * 109.47333 * 329.99844 * 17 15 13 21 21 C 1.47426 * 125.64645 * 179.97438 * 7 5 4 22 22 C 1.36418 * 105.61604 * 0.25850 * 4 3 2 23 23 C 1.50698 * 125.80258 * 179.74091 * 22 4 3 24 24 O 1.33654 * 108.39540 * 359.57278 * 22 4 3 25 25 H 1.09004 * 109.46893 * 90.00601 * 1 2 3 26 26 H 1.08996 * 109.47310 * 210.00449 * 1 2 3 27 27 H 1.09003 * 109.47746 * 330.00898 * 1 2 3 28 28 H 1.07996 * 127.02691 * 0.02562 * 3 2 1 29 29 H 1.08995 * 109.88316 * 298.62177 * 8 7 5 30 30 H 1.09002 * 109.88101 * 59.79072 * 8 7 5 31 31 H 1.08999 * 110.71564 * 219.44370 * 9 8 7 32 32 H 1.08996 * 110.72159 * 96.17410 * 9 8 7 33 33 H 0.97002 * 119.99809 * 341.35145 * 12 10 9 34 34 H 0.96999 * 119.99487 * 179.97438 * 16 15 13 35 35 H 1.09002 * 110.36518 * 322.69812 * 21 7 5 36 36 H 1.08995 * 110.36673 * 84.90922 * 21 7 5 37 37 H 1.09000 * 109.47404 * 89.99491 * 23 22 4 38 38 H 1.08999 * 109.46918 * 209.99660 * 23 22 4 39 39 H 1.09001 * 109.46888 * 329.99844 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6709 0.6029 0.0006 5 6 4.9025 1.4126 0.0003 6 8 5.9891 0.8666 0.0005 7 7 4.8243 2.7581 -0.0001 8 6 3.5818 3.5442 -0.0068 9 6 3.9825 5.0344 0.0158 10 6 5.4174 4.9996 0.6051 11 1 5.3916 4.9478 1.6935 12 7 6.1981 6.1545 0.1547 13 6 7.3274 6.5249 0.8350 14 1 7.6426 5.9654 1.7032 15 6 8.0668 7.6195 0.4084 16 7 9.1520 7.9759 1.0626 17 14 7.5211 8.5876 -1.0930 18 1 6.6092 9.6816 -0.6721 19 1 8.7105 9.1668 -1.7676 20 1 6.8098 7.6844 -2.0328 21 6 5.9704 3.6853 0.0002 22 6 3.5790 -0.7582 -0.0050 23 6 4.7389 -1.7201 -0.0122 24 8 2.2852 -1.0935 0.0007 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3635 0.8900 0.5137 28 1 1.9595 2.1230 0.0004 29 1 3.0109 3.3275 -0.9096 30 1 2.9880 3.3065 0.8759 31 1 3.3140 5.6036 0.6617 32 1 3.9897 5.4471 -0.9930 33 1 5.9151 6.6568 -0.6254 34 1 9.6689 8.7405 0.7643 35 1 6.7763 3.2921 0.6199 36 1 6.3228 3.8531 -1.0175 37 1 5.0214 -1.9564 1.0137 38 1 4.4491 -2.6349 -0.5291 39 1 5.5854 -1.2648 -0.5263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018491937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:34 Heat of formation + Delta-G solvation = -24.072904 kcal Electronic energy + Delta-G solvation = -21482.206820 eV Core-core repulsion = 18198.118687 eV Total energy + Delta-G solvation = -3284.088132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.63070 -40.92277 -38.75008 -36.12144 -34.30585 -33.85802 -33.45872 -31.48606 -30.46555 -29.31648 -26.68804 -25.50389 -24.32816 -23.09304 -22.37395 -21.54954 -19.98226 -19.23263 -18.20303 -17.68145 -17.33578 -16.94577 -16.51600 -16.29340 -15.52510 -15.36149 -14.81312 -14.65992 -14.42921 -14.29735 -14.20721 -14.07681 -13.77913 -13.74975 -13.46595 -13.34171 -13.21458 -12.95763 -12.51324 -12.49448 -12.14365 -12.10090 -11.85838 -11.62004 -11.14384 -11.01760 -10.80157 -9.81109 -9.42109 -9.28915 -8.04665 -5.41555 0.27053 1.04015 1.38605 1.43467 1.50127 1.68047 1.97904 2.24228 2.47680 3.23973 3.41147 3.48532 3.57488 3.78217 3.84626 4.03328 4.18423 4.24321 4.30435 4.40519 4.47704 4.54214 4.56975 4.64811 4.68152 4.78063 4.80599 4.92489 4.94443 5.05173 5.12527 5.20774 5.21149 5.31270 5.46796 5.73906 6.05464 6.18814 6.49423 7.03436 7.06558 7.76162 7.97172 9.16613 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031271 B = 0.003803 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.172137 B = 7361.057115 C = 7983.738506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.014 4.014 3 C -0.202 4.202 4 C -0.260 4.260 5 C 0.591 3.409 6 O -0.587 6.587 7 N -0.608 5.608 8 C 0.102 3.898 9 C -0.130 4.130 10 C 0.169 3.831 11 H 0.062 0.938 12 N -0.736 5.736 13 C -0.241 4.241 14 H 0.053 0.947 15 C -0.062 4.062 16 N -0.983 5.983 17 Si 0.960 3.040 18 H -0.271 1.271 19 H -0.299 1.299 20 H -0.249 1.249 21 C 0.093 3.907 22 C 0.067 3.933 23 C -0.080 4.080 24 O -0.180 6.180 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.188 0.812 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.372 0.628 34 H 0.259 0.741 35 H 0.040 0.960 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.738 -16.183 -4.731 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.220 4.220 4 C -0.265 4.265 5 C 0.383 3.617 6 O -0.470 6.470 7 N -0.340 5.340 8 C -0.019 4.019 9 C -0.168 4.168 10 C 0.059 3.941 11 H 0.080 0.920 12 N -0.379 5.379 13 C -0.372 4.372 14 H 0.071 0.929 15 C -0.254 4.254 16 N -0.633 5.633 17 Si 0.786 3.214 18 H -0.197 1.197 19 H -0.226 1.226 20 H -0.173 1.173 21 C -0.033 4.033 22 C 0.013 3.987 23 C -0.136 4.136 24 O -0.077 6.077 25 H 0.115 0.885 26 H 0.104 0.896 27 H 0.130 0.870 28 H 0.205 0.795 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.206 0.794 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.146 -16.788 -4.560 28.955 hybrid contribution 1.034 0.939 -0.572 1.509 sum -22.112 -15.849 -5.132 27.686 Atomic orbital electron populations 1.20561 0.81437 1.05689 1.05067 1.23119 0.95627 0.82876 1.04547 1.23322 0.89155 1.01491 1.08053 1.21069 0.94022 0.93648 1.17727 1.17358 0.87905 0.80727 0.75753 1.90719 1.30766 1.71811 1.53742 1.48281 1.09543 1.04284 1.71903 1.22563 0.85974 0.89859 1.03541 1.22954 0.95188 0.95531 1.03133 1.21412 0.91158 0.84358 0.97207 0.92041 1.42545 1.28685 1.32844 1.33808 1.19004 1.00747 1.09492 1.07961 0.92930 1.25588 0.97186 1.00023 1.02559 1.69905 1.19379 1.30057 1.43917 0.85345 0.77340 0.79073 0.79597 1.19670 1.22571 1.17317 1.22947 0.88982 0.91000 1.00370 1.23028 0.83678 0.94085 0.97868 1.20603 0.91013 0.97062 1.04886 1.83711 1.15771 1.36553 1.71619 0.88453 0.89610 0.87043 0.79482 0.88687 0.88806 0.87091 0.89576 0.79368 0.93210 0.94110 0.92669 0.88711 0.87933 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.40 71.23 0.74 0.22 16 2 C -0.01 -0.23 7.28 24.76 0.18 -0.05 16 3 C -0.20 -3.93 9.30 23.65 0.22 -3.71 16 4 C -0.26 -7.15 6.25 -18.99 -0.12 -7.27 16 5 C 0.59 20.46 7.84 86.65 0.68 21.14 16 6 O -0.59 -24.49 15.11 -4.06 -0.06 -24.55 16 7 N -0.61 -19.46 3.33 -815.73 -2.71 -22.17 16 8 C 0.10 2.21 5.00 86.73 0.43 2.65 16 9 C -0.13 -3.12 6.58 31.78 0.21 -2.91 16 10 C 0.17 6.17 3.68 46.38 0.17 6.34 16 11 H 0.06 2.39 8.13 -2.39 -0.02 2.37 16 12 N -0.74 -33.14 5.08 -316.42 -1.61 -34.75 16 13 C -0.24 -13.69 10.47 84.03 0.88 -12.81 16 14 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 15 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 16 N -0.98 -63.26 13.97 21.65 0.30 -62.96 16 17 Si 0.96 44.43 27.74 68.60 1.90 46.33 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 20 H -0.25 -10.23 6.52 99.48 0.65 -9.59 16 21 C 0.09 3.59 6.60 86.85 0.57 4.16 16 22 C 0.07 1.65 7.37 25.26 0.19 1.84 16 23 C -0.08 -1.68 9.89 71.24 0.70 -0.98 16 24 O -0.18 -3.86 10.52 4.43 0.05 -3.81 16 25 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.19 2.58 4.87 -2.91 -0.01 2.57 16 29 H 0.10 1.61 7.03 -2.39 -0.02 1.59 16 30 H 0.09 1.64 6.85 -2.39 -0.02 1.62 16 31 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 1.95 8.00 -2.39 -0.02 1.93 16 33 H 0.37 15.58 5.57 -92.71 -0.52 15.06 16 34 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 35 H 0.04 1.82 8.04 -2.39 -0.02 1.80 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 2.28 6.49 -2.39 -0.02 2.27 16 Total: -1.00 -77.97 320.97 3.69 -74.28 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.49 Total: 22.17 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 5.33 Total: 5.45 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -4.02 Total: -119.87 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.01 Total: -28.36 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.90 Total: 46.33 kcal Total: -77.97 3.69 -74.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018491937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.211 kcal (2) G-P(sol) polarization free energy of solvation -77.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds