Wall clock time and date at job start Tue Mar 31 2020 01:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41383 * 126.57785 * 2 1 4 4 C 1.34519 * 106.83795 * 179.97438 * 3 2 1 5 5 O 1.34302 * 108.41803 * 359.73430 * 4 3 2 6 6 C 1.34299 * 109.47949 * 0.43502 * 5 4 3 7 7 C 1.50707 * 125.79013 * 179.82436 * 6 5 4 8 8 C 1.50700 * 109.46829 * 269.69402 * 7 6 5 9 9 O 1.21275 * 120.00591 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99694 * 179.97438 * 8 7 6 11 11 C 1.47428 * 125.64580 * 0.04642 * 10 8 7 12 12 C 1.54911 * 104.83212 * 204.08722 * 11 10 8 13 13 C 1.55158 * 101.58207 * 322.99455 * 12 11 10 14 14 H 1.09003 * 110.87139 * 277.06835 * 13 12 11 15 15 N 1.46496 * 110.72344 * 153.86380 * 13 12 11 16 16 C 1.36939 * 120.00077 * 91.47427 * 15 13 12 17 17 H 1.07997 * 119.99728 * 359.72656 * 16 15 13 18 18 C 1.38815 * 119.99845 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99884 * 359.72042 * 18 16 15 20 20 Si 1.86798 * 119.99660 * 179.72678 * 18 16 15 21 21 H 1.48493 * 109.47326 * 89.99909 * 20 18 16 22 22 H 1.48506 * 109.46545 * 209.99659 * 20 18 16 23 23 H 1.48498 * 109.47210 * 329.99370 * 20 18 16 24 24 C 1.47016 * 125.65250 * 179.97438 * 10 8 7 25 25 H 1.09001 * 109.47296 * 270.04696 * 1 2 3 26 26 H 1.09003 * 109.47122 * 30.04470 * 1 2 3 27 27 H 1.08997 * 109.46892 * 150.04668 * 1 2 3 28 28 H 1.08000 * 126.57967 * 359.97438 * 3 2 1 29 29 H 1.07997 * 125.78527 * 180.02562 * 4 3 2 30 30 H 1.08997 * 109.46846 * 149.69868 * 7 6 5 31 31 H 1.08993 * 109.46918 * 29.69792 * 7 6 5 32 32 H 1.08994 * 110.36708 * 322.93099 * 11 10 8 33 33 H 1.09003 * 110.36413 * 85.25160 * 11 10 8 34 34 H 1.08994 * 111.00552 * 204.91692 * 12 11 10 35 35 H 1.09005 * 111.00180 * 81.06305 * 12 11 10 36 36 H 0.97004 * 120.00009 * 271.48044 * 15 13 12 37 37 H 0.97000 * 119.99517 * 180.02562 * 19 18 16 38 38 H 1.09007 * 109.87633 * 59.56123 * 24 10 8 39 39 H 1.08997 * 110.01376 * 298.47731 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5847 -0.6616 0.0068 6 6 2.3086 -1.0802 0.0007 7 6 1.8522 -2.5164 0.0009 8 6 1.7005 -2.9955 -1.4198 9 8 1.9400 -2.2449 -2.3418 10 7 1.2997 -4.2586 -1.6659 11 6 0.9769 -5.2719 -0.6448 12 6 1.1870 -6.6321 -1.3557 13 6 0.6738 -6.3187 -2.7860 14 1 -0.4113 -6.4083 -2.8376 15 7 1.3119 -7.1969 -3.7697 16 6 0.7219 -8.3843 -4.1120 17 1 -0.2116 -8.6754 -3.6535 18 6 1.3268 -9.2167 -5.0438 19 7 2.4646 -8.8621 -5.6023 20 14 0.5258 -10.8400 -5.5050 21 1 -0.3900 -10.6309 -6.6550 22 1 1.5757 -11.8209 -5.8803 23 1 -0.2448 -11.3586 -4.3464 24 6 1.1107 -4.8537 -2.9969 25 1 -0.3634 0.0008 1.0277 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5131 28 1 2.0366 2.1690 -0.0004 29 1 4.5060 1.2923 0.0011 30 1 0.8938 -2.5929 0.5144 31 1 2.5901 -3.1321 0.5152 32 1 1.6511 -5.1806 0.2067 33 1 -0.0592 -5.1685 -0.3222 34 1 0.5883 -7.4138 -0.8883 35 1 2.2419 -6.9063 -1.3705 36 1 2.1524 -6.9373 -4.1786 37 1 2.8871 -9.4436 -6.2536 38 1 2.0476 -4.8228 -3.5531 39 1 0.3383 -4.3111 -3.5418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019354625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:51 Heat of formation + Delta-G solvation = -6.964619 kcal Electronic energy + Delta-G solvation = -21214.315107 eV Core-core repulsion = 17930.968846 eV Total energy + Delta-G solvation = -3283.346261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.66181 -39.77067 -37.33730 -34.34704 -34.15879 -32.33908 -31.38064 -29.57777 -29.10364 -27.72312 -26.04167 -23.69875 -22.79580 -21.55960 -20.36342 -19.89315 -18.99039 -17.45939 -17.21195 -16.96821 -16.02825 -15.87358 -15.11222 -14.92673 -14.41278 -14.01742 -13.57652 -13.49029 -13.27975 -13.23773 -12.85583 -12.77000 -12.47439 -12.43808 -12.20049 -11.82297 -11.70885 -11.51236 -11.21814 -10.85741 -10.75365 -10.34904 -10.11692 -9.83447 -9.74389 -9.66461 -8.99752 -8.44061 -8.40935 -7.07441 -5.84340 -3.15308 1.63074 2.48200 2.70603 2.86779 3.25885 3.39565 3.44728 3.46532 4.45561 4.52489 4.62033 4.77384 4.82666 4.98160 5.03980 5.16494 5.26865 5.33375 5.36380 5.50166 5.53483 5.55150 5.67283 5.72923 5.75936 5.92322 5.94353 6.10874 6.11173 6.23464 6.34281 6.47840 6.53925 6.58227 6.86522 7.08730 7.62629 7.67359 8.26798 8.33033 9.44336 9.98521 10.33013 11.37793 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043320 B = 0.003126 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.204528 B = 8954.123821 C = 9133.635898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.168 4.168 3 C -0.211 4.211 4 C -0.038 4.038 5 O -0.171 6.171 6 C 0.007 3.993 7 C -0.056 4.056 8 C 0.525 3.475 9 O -0.533 6.533 10 N -0.612 5.612 11 C 0.096 3.904 12 C -0.155 4.155 13 C 0.172 3.828 14 H 0.067 0.933 15 N -0.715 5.715 16 C -0.247 4.247 17 H 0.073 0.927 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.100 3.900 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.146 0.854 29 H 0.201 0.799 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.070 0.930 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 15.768 15.861 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.169 4.169 3 C -0.230 4.230 4 C -0.106 4.106 5 O -0.067 6.067 6 C -0.043 4.043 7 C -0.096 4.096 8 C 0.312 3.688 9 O -0.410 6.410 10 N -0.347 5.347 11 C -0.028 4.028 12 C -0.197 4.197 13 C 0.060 3.940 14 H 0.085 0.915 15 N -0.356 5.356 16 C -0.377 4.377 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.023 4.023 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.164 0.836 29 H 0.218 0.782 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.219 15.876 15.310 22.167 hybrid contribution -0.078 -0.628 -0.413 0.755 sum -2.297 15.249 14.897 21.441 Atomic orbital electron populations 1.20170 0.89348 1.02790 1.01639 1.20146 0.97030 0.92007 1.07712 1.21659 0.92641 0.99652 1.09090 1.23929 0.99697 0.80585 1.06353 1.83987 1.28651 1.22806 1.71226 1.21290 0.81191 0.95013 1.06845 1.20056 1.03922 0.89505 0.96117 1.19951 0.77482 0.80631 0.90700 1.90740 1.50017 1.54077 1.46172 1.48462 1.66343 1.10732 1.09166 1.22454 1.00082 0.88898 0.91326 1.23574 1.02955 0.94161 0.98971 1.21187 0.96684 0.87239 0.88889 0.91468 1.42376 1.26172 1.19900 1.47107 1.19223 1.04358 0.95110 1.19056 0.90919 1.24786 0.97288 0.99135 0.99444 1.69669 1.18135 1.38151 1.31727 0.86164 0.78151 0.83345 0.78328 1.21607 1.21730 1.20669 1.22358 1.01703 0.94932 0.83345 0.91568 0.91488 0.91784 0.83607 0.78191 0.86180 0.87185 0.91222 0.91407 0.90435 0.90613 0.77926 0.93317 0.91143 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.99 36.01 0.36 -0.45 16 2 C -0.17 -2.07 6.16 -104.74 -0.65 -2.71 16 3 C -0.21 -2.35 10.87 -39.70 -0.43 -2.78 16 4 C -0.04 -0.41 12.09 29.42 0.36 -0.06 16 5 O -0.17 -2.35 10.65 5.72 0.06 -2.29 16 6 C 0.01 0.09 5.81 -35.62 -0.21 -0.11 16 7 C -0.06 -0.64 4.86 -29.03 -0.14 -0.78 16 8 C 0.52 8.18 7.84 -10.98 -0.09 8.09 16 9 O -0.53 -10.65 16.36 5.56 0.09 -10.56 16 10 N -0.61 -9.22 3.33 -170.52 -0.57 -9.79 16 11 C 0.10 1.15 6.69 -2.53 -0.02 1.13 16 12 C -0.16 -2.40 6.77 -24.58 -0.17 -2.57 16 13 C 0.17 3.21 3.61 -66.10 -0.24 2.97 16 14 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 15 N -0.72 -17.28 5.22 -51.65 -0.27 -17.55 16 16 C -0.25 -6.57 9.96 -15.06 -0.15 -6.72 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 20 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 C 0.10 1.77 6.62 -3.07 -0.02 1.75 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.66 7.78 -51.93 -0.40 0.26 16 28 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.00 7.76 -51.93 -0.40 0.60 16 31 H 0.11 1.04 7.85 -51.93 -0.41 0.63 16 32 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.39 10.11 7.56 -40.82 -0.31 9.80 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.07 1.40 7.72 -51.92 -0.40 1.00 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -33.59 331.61 -7.13 -40.72 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.66 Total: 7.21 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -1.48 Total: -2.62 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.11 Total: -54.24 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.15 Total: -12.84 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.59 -7.13 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019354625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.753 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds