Wall clock time and date at job start Tue Mar 31 2020 01:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41383 * 126.57785 * 2 1 4 4 C 1.34519 * 106.83795 * 179.97438 * 3 2 1 5 5 O 1.34302 * 108.41803 * 359.73430 * 4 3 2 6 6 C 1.34299 * 109.47949 * 0.43502 * 5 4 3 7 7 C 1.50707 * 125.79013 * 179.82436 * 6 5 4 8 8 C 1.50700 * 109.46829 * 269.69402 * 7 6 5 9 9 O 1.21275 * 120.00591 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99694 * 179.97438 * 8 7 6 11 11 C 1.47428 * 125.64580 * 0.04642 * 10 8 7 12 12 C 1.54911 * 104.83212 * 204.08722 * 11 10 8 13 13 C 1.55158 * 101.58207 * 322.99455 * 12 11 10 14 14 H 1.09003 * 110.87139 * 277.06835 * 13 12 11 15 15 N 1.46496 * 110.72344 * 153.86380 * 13 12 11 16 16 C 1.36939 * 120.00077 * 91.47427 * 15 13 12 17 17 H 1.07997 * 119.99728 * 359.72656 * 16 15 13 18 18 C 1.38815 * 119.99845 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99884 * 359.72042 * 18 16 15 20 20 Si 1.86798 * 119.99660 * 179.72678 * 18 16 15 21 21 H 1.48493 * 109.47326 * 89.99909 * 20 18 16 22 22 H 1.48506 * 109.46545 * 209.99659 * 20 18 16 23 23 H 1.48498 * 109.47210 * 329.99370 * 20 18 16 24 24 C 1.47016 * 125.65250 * 179.97438 * 10 8 7 25 25 H 1.09001 * 109.47296 * 270.04696 * 1 2 3 26 26 H 1.09003 * 109.47122 * 30.04470 * 1 2 3 27 27 H 1.08997 * 109.46892 * 150.04668 * 1 2 3 28 28 H 1.08000 * 126.57967 * 359.97438 * 3 2 1 29 29 H 1.07997 * 125.78527 * 180.02562 * 4 3 2 30 30 H 1.08997 * 109.46846 * 149.69868 * 7 6 5 31 31 H 1.08993 * 109.46918 * 29.69792 * 7 6 5 32 32 H 1.08994 * 110.36708 * 322.93099 * 11 10 8 33 33 H 1.09003 * 110.36413 * 85.25160 * 11 10 8 34 34 H 1.08994 * 111.00552 * 204.91692 * 12 11 10 35 35 H 1.09005 * 111.00180 * 81.06305 * 12 11 10 36 36 H 0.97004 * 120.00009 * 271.48044 * 15 13 12 37 37 H 0.97000 * 119.99517 * 180.02562 * 19 18 16 38 38 H 1.09007 * 109.87633 * 59.56123 * 24 10 8 39 39 H 1.08997 * 110.01376 * 298.47731 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5847 -0.6616 0.0068 6 6 2.3086 -1.0802 0.0007 7 6 1.8522 -2.5164 0.0009 8 6 1.7005 -2.9955 -1.4198 9 8 1.9400 -2.2449 -2.3418 10 7 1.2997 -4.2586 -1.6659 11 6 0.9769 -5.2719 -0.6448 12 6 1.1870 -6.6321 -1.3557 13 6 0.6738 -6.3187 -2.7860 14 1 -0.4113 -6.4083 -2.8376 15 7 1.3119 -7.1969 -3.7697 16 6 0.7219 -8.3843 -4.1120 17 1 -0.2116 -8.6754 -3.6535 18 6 1.3268 -9.2167 -5.0438 19 7 2.4646 -8.8621 -5.6023 20 14 0.5258 -10.8400 -5.5050 21 1 -0.3900 -10.6309 -6.6550 22 1 1.5757 -11.8209 -5.8803 23 1 -0.2448 -11.3586 -4.3464 24 6 1.1107 -4.8537 -2.9969 25 1 -0.3634 0.0008 1.0277 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5131 28 1 2.0366 2.1690 -0.0004 29 1 4.5060 1.2923 0.0011 30 1 0.8938 -2.5929 0.5144 31 1 2.5901 -3.1321 0.5152 32 1 1.6511 -5.1806 0.2067 33 1 -0.0592 -5.1685 -0.3222 34 1 0.5883 -7.4138 -0.8883 35 1 2.2419 -6.9063 -1.3705 36 1 2.1524 -6.9373 -4.1786 37 1 2.8871 -9.4436 -6.2536 38 1 2.0476 -4.8228 -3.5531 39 1 0.3383 -4.3111 -3.5418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019354625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:49 Heat of formation + Delta-G solvation = -29.508704 kcal Electronic energy + Delta-G solvation = -21215.292692 eV Core-core repulsion = 17930.968846 eV Total energy + Delta-G solvation = -3284.323846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.52762 -41.02595 -38.71980 -35.92666 -35.21684 -33.58789 -32.83924 -31.00997 -30.07442 -29.05335 -27.04654 -25.51888 -24.08641 -22.41555 -21.68632 -21.04056 -20.04943 -19.35386 -18.33552 -17.93207 -17.32996 -16.90738 -16.52332 -16.27399 -15.71010 -15.37117 -15.07811 -14.77816 -14.52854 -14.12228 -13.95233 -13.73026 -13.62658 -13.39108 -13.30256 -13.14052 -12.98707 -12.95578 -12.66780 -12.36001 -12.34478 -12.09712 -11.74188 -11.66917 -11.07957 -10.94063 -10.49997 -9.70636 -9.27939 -9.04818 -7.94899 -5.25466 0.73542 1.49557 1.51358 1.53944 1.59520 1.62115 1.94120 2.23727 2.57645 3.36186 3.50334 3.68883 3.77215 3.92262 3.98546 4.06724 4.07487 4.26658 4.29073 4.40422 4.43809 4.53214 4.63749 4.70704 4.81262 4.87381 4.89170 4.96109 5.02806 5.14924 5.20195 5.28069 5.33127 5.45948 5.54316 5.68957 6.22733 6.25492 6.50190 7.07147 7.31635 8.03811 8.27088 9.28787 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043320 B = 0.003126 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.204528 B = 8954.123821 C = 9133.635898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.179 4.179 3 C -0.227 4.227 4 C -0.042 4.042 5 O -0.195 6.195 6 C -0.026 4.026 7 C -0.045 4.045 8 C 0.521 3.479 9 O -0.587 6.587 10 N -0.611 5.611 11 C 0.102 3.898 12 C -0.147 4.147 13 C 0.165 3.835 14 H 0.075 0.925 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.086 0.914 18 C -0.078 4.078 19 N -0.973 5.973 20 Si 0.976 3.024 21 H -0.290 1.290 22 H -0.300 1.300 23 H -0.263 1.263 24 C 0.108 3.892 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.168 0.832 29 H 0.235 0.765 30 H 0.157 0.843 31 H 0.133 0.867 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.370 0.630 37 H 0.250 0.750 38 H 0.038 0.962 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 16.148 18.639 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.180 4.180 3 C -0.246 4.246 4 C -0.109 4.109 5 O -0.092 6.092 6 C -0.076 4.076 7 C -0.084 4.084 8 C 0.311 3.689 9 O -0.468 6.468 10 N -0.345 5.345 11 C -0.019 4.019 12 C -0.187 4.187 13 C 0.055 3.945 14 H 0.093 0.907 15 N -0.372 5.372 16 C -0.370 4.370 17 H 0.104 0.896 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.805 3.195 21 H -0.217 1.217 22 H -0.227 1.227 23 H -0.187 1.187 24 C -0.016 4.016 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.185 0.815 29 H 0.251 0.749 30 H 0.174 0.826 31 H 0.151 0.849 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.202 0.798 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.829 16.262 18.170 24.684 hybrid contribution 0.393 -0.610 -1.247 1.443 sum -3.436 15.653 16.923 23.307 Atomic orbital electron populations 1.20233 0.87867 1.02668 1.03081 1.20626 0.98355 0.92310 1.06733 1.22049 0.92722 1.00596 1.09225 1.24718 1.01197 0.79971 1.04992 1.83967 1.29302 1.24162 1.71778 1.21695 0.81274 0.96130 1.08458 1.20142 1.06409 0.88882 0.92971 1.20793 0.75986 0.79967 0.92132 1.90712 1.52270 1.55543 1.48245 1.48532 1.66053 1.11332 1.08563 1.22671 1.03143 0.85315 0.90809 1.23376 1.01672 0.96938 0.96747 1.21417 0.96747 0.86703 0.89595 0.90672 1.42580 1.25847 1.20266 1.48472 1.19672 1.04175 0.95437 1.17751 0.89615 1.25626 0.98166 1.02830 1.00372 1.69843 1.20058 1.39422 1.33016 0.85107 0.76940 0.79205 0.78293 1.21682 1.22655 1.18745 1.22021 0.99831 0.94768 0.84999 0.89232 0.91112 0.92408 0.81494 0.74888 0.82576 0.84911 0.87591 0.87944 0.88897 0.92705 0.79770 0.94103 0.94336 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 9.99 71.24 0.71 -0.72 16 2 C -0.18 -4.13 6.16 -19.94 -0.12 -4.25 16 3 C -0.23 -4.70 10.87 22.19 0.24 -4.45 16 4 C -0.04 -0.86 12.09 66.97 0.81 -0.05 16 5 O -0.20 -5.20 10.65 -2.43 -0.03 -5.23 16 6 C -0.03 -0.65 5.81 24.83 0.14 -0.50 16 7 C -0.05 -0.90 4.86 29.10 0.14 -0.76 16 8 C 0.52 15.64 7.84 87.66 0.69 16.33 16 9 O -0.59 -23.84 16.36 -3.01 -0.05 -23.89 16 10 N -0.61 -17.44 3.33 -811.80 -2.70 -20.14 16 11 C 0.10 2.05 6.69 86.86 0.58 2.63 16 12 C -0.15 -4.22 6.77 31.99 0.22 -4.00 16 13 C 0.17 6.07 3.61 46.18 0.17 6.24 16 14 H 0.08 2.65 8.09 -2.39 -0.02 2.63 16 15 N -0.73 -36.00 5.22 -317.33 -1.66 -37.65 16 16 C -0.24 -12.72 9.96 84.03 0.84 -11.89 16 17 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 18 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 19 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 20 Si 0.98 45.12 29.55 68.60 2.03 47.15 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 C 0.11 3.89 6.62 86.73 0.57 4.46 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.07 7.78 -2.39 -0.02 1.06 16 28 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 29 H 0.23 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.16 1.91 7.76 -2.39 -0.02 1.89 16 31 H 0.13 2.03 7.85 -2.39 -0.02 2.01 16 32 H 0.11 1.47 7.48 -2.39 -0.02 1.45 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.37 20.26 7.56 -92.71 -0.70 19.56 16 37 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.04 1.62 7.72 -2.38 -0.02 1.60 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -76.38 331.61 3.68 -72.70 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.35 Total: 27.29 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 5.46 Total: -0.89 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -4.08 Total: -117.13 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.08 Total: -29.12 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.38 3.68 -72.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019354625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.193 kcal (2) G-P(sol) polarization free energy of solvation -76.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds