Wall clock time and date at job start Tue Mar 31 2020 01:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34182 * 127.01921 * 2 1 4 4 O 1.34214 * 109.12304 * 179.97438 * 3 2 1 5 5 C 1.33652 * 110.90756 * 359.75466 * 4 3 2 6 6 C 1.50706 * 125.80415 * 180.26863 * 5 4 3 7 7 C 1.36419 * 108.39593 * 0.39513 * 5 4 3 8 8 C 1.47381 * 127.18934 * 179.89633 * 7 5 4 9 9 O 1.21613 * 119.99816 * 269.67703 * 8 7 5 10 10 N 1.34777 * 120.00222 * 89.68203 * 8 7 5 11 11 C 1.46498 * 119.99828 * 180.27565 * 10 8 7 12 12 H 1.09002 * 112.85447 * 23.52517 * 11 10 8 13 13 C 1.53782 * 113.61542 * 154.72141 * 11 10 8 14 14 C 1.53779 * 87.08025 * 139.97648 * 13 11 10 15 15 H 1.08996 * 113.61460 * 219.93296 * 14 13 11 16 16 N 1.46504 * 113.61349 * 89.11890 * 14 13 11 17 17 C 1.36937 * 120.00274 * 154.99559 * 16 14 13 18 18 H 1.08001 * 119.99932 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00153 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99793 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99878 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46915 * 90.00512 * 21 19 17 23 23 H 1.48500 * 109.46835 * 210.00130 * 21 19 17 24 24 H 1.48492 * 109.47235 * 330.00402 * 21 19 17 25 25 C 1.53777 * 87.08273 * 334.57004 * 14 13 11 26 26 H 1.09009 * 109.47246 * 270.02821 * 1 2 3 27 27 H 1.08999 * 109.47173 * 30.02691 * 1 2 3 28 28 H 1.09000 * 109.46896 * 150.03119 * 1 2 3 29 29 H 1.08001 * 125.43992 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.46958 * 270.14668 * 6 5 4 31 31 H 1.09000 * 109.46745 * 30.14409 * 6 5 4 32 32 H 1.08998 * 109.47221 * 150.13973 * 6 5 4 33 33 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 34 34 H 1.08997 * 113.61719 * 254.52880 * 13 11 10 35 35 H 1.08999 * 113.60977 * 25.42830 * 13 11 10 36 36 H 0.96996 * 119.99677 * 335.00046 * 16 14 13 37 37 H 0.97004 * 120.00125 * 179.97438 * 20 19 17 38 38 H 1.09001 * 113.61338 * 270.87786 * 25 14 13 39 39 H 1.09000 * 113.61355 * 139.98049 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0714 0.0000 4 8 3.5921 0.6589 0.0006 5 6 3.6623 -0.6757 0.0063 6 6 4.9292 -1.4919 0.0144 7 6 2.3923 -1.1737 0.0008 8 6 1.9914 -2.5919 0.0019 9 8 1.8259 -3.1779 -1.0508 10 7 1.8082 -3.2395 1.1696 11 6 1.4157 -4.6510 1.1706 12 1 1.6906 -5.1675 0.2510 13 6 1.8274 -5.4040 2.4467 14 6 0.4635 -6.1106 2.3754 15 1 -0.0125 -6.2402 3.3474 16 7 0.4813 -7.3421 1.5821 17 6 -0.4416 -8.3248 1.8223 18 1 -1.1830 -8.1918 2.5964 19 6 -0.4250 -9.4914 1.0703 20 7 0.4781 -9.6533 0.1266 21 14 -1.6845 -10.8316 1.3975 22 1 -2.8846 -10.5996 0.5542 23 1 -1.0963 -12.1547 1.0681 24 1 -2.0739 -10.8058 2.8303 25 6 -0.0430 -4.8843 1.5980 26 1 -0.3634 0.0005 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5134 29 1 1.9894 2.1011 -0.0004 30 1 5.2398 -1.6907 -1.0113 31 1 5.7140 -0.9395 0.5311 32 1 4.7500 -2.4358 0.5292 33 1 1.9406 -2.7723 2.0093 34 1 2.6747 -6.0746 2.3038 35 1 1.9397 -4.7582 3.3176 36 1 1.1469 -7.4614 0.8868 37 1 0.4900 -10.4687 -0.3987 38 1 -0.4422 -4.0965 2.2369 39 1 -0.7057 -5.1355 0.7698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020122452.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:07 Heat of formation + Delta-G solvation = 3.241465 kcal Electronic energy + Delta-G solvation = -21195.047453 eV Core-core repulsion = 17912.143761 eV Total energy + Delta-G solvation = -3282.903692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.70709 -39.64465 -37.87000 -34.12830 -33.92818 -32.84168 -32.32853 -29.71943 -28.32322 -26.70826 -25.10430 -24.74439 -23.42604 -22.05641 -20.18049 -19.84794 -18.76824 -17.64121 -17.36242 -16.56791 -15.95198 -15.76708 -14.91378 -14.81659 -14.38002 -13.96190 -13.63862 -13.46960 -13.43996 -13.11631 -13.06703 -12.85051 -12.69109 -12.52948 -12.09062 -11.97645 -11.67235 -11.49129 -10.86885 -10.81012 -10.25595 -10.16437 -10.05368 -9.72180 -9.63460 -9.52822 -8.91127 -8.69377 -8.65066 -7.00156 -5.78640 -3.08743 1.45335 2.06888 2.64476 2.66495 3.43623 3.44498 3.48505 3.50433 4.28365 4.56716 4.66210 4.79286 4.93359 5.07967 5.10810 5.21267 5.25189 5.38753 5.40680 5.45048 5.47499 5.50156 5.67411 5.76164 5.88083 5.96110 6.00294 6.09734 6.21616 6.23836 6.37658 6.63261 6.72986 6.79059 6.88463 7.04056 7.67646 7.70515 8.36902 8.39573 9.50294 10.06574 10.40615 11.43546 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033549 B = 0.003342 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.403658 B = 8376.442312 C = 8627.994517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.147 4.147 3 C -0.044 4.044 4 O -0.175 6.175 5 C 0.040 3.960 6 C -0.080 4.080 7 C -0.226 4.226 8 C 0.587 3.413 9 O -0.529 6.529 10 N -0.708 5.708 11 C 0.124 3.876 12 H 0.114 0.886 13 C -0.164 4.164 14 C 0.172 3.828 15 H 0.068 0.932 16 N -0.705 5.705 17 C -0.246 4.246 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.183 4.183 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.206 0.794 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.397 0.603 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.069 0.931 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.182 22.345 3.747 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C -0.110 4.110 4 O -0.071 6.071 5 C -0.012 4.012 6 C -0.136 4.136 7 C -0.230 4.230 8 C 0.372 3.628 9 O -0.405 6.405 10 N -0.358 5.358 11 C 0.020 3.980 12 H 0.132 0.868 13 C -0.204 4.204 14 C 0.058 3.942 15 H 0.087 0.913 16 N -0.344 5.344 17 C -0.377 4.377 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.226 4.226 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.223 0.777 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.231 0.769 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.168 21.914 3.031 22.966 hybrid contribution -0.642 -0.432 0.180 0.794 sum 5.526 21.483 3.211 22.413 Atomic orbital electron populations 1.20212 0.88588 1.03171 1.02461 1.21376 0.96884 0.90593 1.06001 1.23593 0.79653 0.99456 1.08331 1.83703 1.29568 1.21939 1.71933 1.22540 0.96099 0.80734 1.01792 1.20439 0.91025 0.97739 1.04384 1.21163 0.93120 0.94337 1.14387 1.17340 0.76761 0.84467 0.84277 1.90839 1.50438 1.67799 1.31439 1.46141 1.69282 1.12611 1.07722 1.22698 0.96414 0.79048 0.99845 0.86805 1.23899 1.00946 0.99212 0.96315 1.20908 0.92711 0.85990 0.94543 0.91347 1.42198 1.37485 1.14061 1.40640 1.19270 1.08090 0.95223 1.15090 0.90926 1.24783 0.99057 0.98437 0.98467 1.69668 1.36312 1.27562 1.24209 0.86162 0.80752 0.81462 0.77628 1.21640 1.21747 1.20685 1.24311 0.95915 1.00567 1.01774 0.90999 0.91211 0.91057 0.77749 0.89282 0.89893 0.89016 0.76909 0.90812 0.90316 0.77972 0.93362 0.91259 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 10.38 36.01 0.37 -0.48 16 2 C -0.15 -1.67 6.38 -102.50 -0.65 -2.32 16 3 C -0.04 -0.41 11.96 29.30 0.35 -0.06 16 4 O -0.17 -1.89 10.52 7.66 0.08 -1.81 16 5 C 0.04 0.46 7.37 -34.96 -0.26 0.20 16 6 C -0.08 -0.70 10.24 36.01 0.37 -0.33 16 7 C -0.23 -3.01 6.07 -103.28 -0.63 -3.64 16 8 C 0.59 9.37 7.25 -12.54 -0.09 9.28 16 9 O -0.53 -10.92 16.70 5.27 0.09 -10.83 16 10 N -0.71 -9.88 5.35 -54.11 -0.29 -10.17 16 11 C 0.12 2.07 4.12 -67.12 -0.28 1.79 16 12 H 0.11 2.30 7.46 -51.93 -0.39 1.91 16 13 C -0.16 -2.57 7.58 -25.92 -0.20 -2.77 16 14 C 0.17 3.34 4.56 -67.12 -0.31 3.04 16 15 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 16 N -0.71 -17.66 5.31 -52.64 -0.28 -17.94 16 17 C -0.25 -6.81 9.97 -15.06 -0.15 -6.96 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.18 -3.24 7.68 -25.92 -0.20 -3.44 16 26 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.82 7.93 -51.93 -0.41 0.40 16 33 H 0.40 4.38 8.71 -40.82 -0.36 4.02 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 36 H 0.39 10.35 7.90 -40.82 -0.32 10.02 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -33.93 338.43 -7.03 -40.96 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -5.67 Total: 10.98 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.76 Total: -6.11 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.16 Total: -55.66 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.17 Total: -12.64 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.93 -7.03 -40.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020122452.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.205 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds