Wall clock time and date at job start Tue Mar 31 2020 01:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34182 * 127.01921 * 2 1 4 4 O 1.34214 * 109.12304 * 179.97438 * 3 2 1 5 5 C 1.33652 * 110.90756 * 359.75466 * 4 3 2 6 6 C 1.50706 * 125.80415 * 180.26863 * 5 4 3 7 7 C 1.36419 * 108.39593 * 0.39513 * 5 4 3 8 8 C 1.47381 * 127.18934 * 179.89633 * 7 5 4 9 9 O 1.21613 * 119.99816 * 269.67703 * 8 7 5 10 10 N 1.34777 * 120.00222 * 89.68203 * 8 7 5 11 11 C 1.46498 * 119.99828 * 180.27565 * 10 8 7 12 12 H 1.09002 * 112.85447 * 23.52517 * 11 10 8 13 13 C 1.53782 * 113.61542 * 154.72141 * 11 10 8 14 14 C 1.53779 * 87.08025 * 139.97648 * 13 11 10 15 15 H 1.08996 * 113.61460 * 219.93296 * 14 13 11 16 16 N 1.46504 * 113.61349 * 89.11890 * 14 13 11 17 17 C 1.36937 * 120.00274 * 154.99559 * 16 14 13 18 18 H 1.08001 * 119.99932 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00153 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99793 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99878 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46915 * 90.00512 * 21 19 17 23 23 H 1.48500 * 109.46835 * 210.00130 * 21 19 17 24 24 H 1.48492 * 109.47235 * 330.00402 * 21 19 17 25 25 C 1.53777 * 87.08273 * 334.57004 * 14 13 11 26 26 H 1.09009 * 109.47246 * 270.02821 * 1 2 3 27 27 H 1.08999 * 109.47173 * 30.02691 * 1 2 3 28 28 H 1.09000 * 109.46896 * 150.03119 * 1 2 3 29 29 H 1.08001 * 125.43992 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.46958 * 270.14668 * 6 5 4 31 31 H 1.09000 * 109.46745 * 30.14409 * 6 5 4 32 32 H 1.08998 * 109.47221 * 150.13973 * 6 5 4 33 33 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 34 34 H 1.08997 * 113.61719 * 254.52880 * 13 11 10 35 35 H 1.08999 * 113.60977 * 25.42830 * 13 11 10 36 36 H 0.96996 * 119.99677 * 335.00046 * 16 14 13 37 37 H 0.97004 * 120.00125 * 179.97438 * 20 19 17 38 38 H 1.09001 * 113.61338 * 270.87786 * 25 14 13 39 39 H 1.09000 * 113.61355 * 139.98049 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0714 0.0000 4 8 3.5921 0.6589 0.0006 5 6 3.6623 -0.6757 0.0063 6 6 4.9292 -1.4919 0.0144 7 6 2.3923 -1.1737 0.0008 8 6 1.9914 -2.5919 0.0019 9 8 1.8259 -3.1779 -1.0508 10 7 1.8082 -3.2395 1.1696 11 6 1.4157 -4.6510 1.1706 12 1 1.6906 -5.1675 0.2510 13 6 1.8274 -5.4040 2.4467 14 6 0.4635 -6.1106 2.3754 15 1 -0.0125 -6.2402 3.3474 16 7 0.4813 -7.3421 1.5821 17 6 -0.4416 -8.3248 1.8223 18 1 -1.1830 -8.1918 2.5964 19 6 -0.4250 -9.4914 1.0703 20 7 0.4781 -9.6533 0.1266 21 14 -1.6845 -10.8316 1.3975 22 1 -2.8846 -10.5996 0.5542 23 1 -1.0963 -12.1547 1.0681 24 1 -2.0739 -10.8058 2.8303 25 6 -0.0430 -4.8843 1.5980 26 1 -0.3634 0.0005 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5134 29 1 1.9894 2.1011 -0.0004 30 1 5.2398 -1.6907 -1.0113 31 1 5.7140 -0.9395 0.5311 32 1 4.7500 -2.4358 0.5292 33 1 1.9406 -2.7723 2.0093 34 1 2.6747 -6.0746 2.3038 35 1 1.9397 -4.7582 3.3176 36 1 1.1469 -7.4614 0.8868 37 1 0.4900 -10.4687 -0.3987 38 1 -0.4422 -4.0965 2.2369 39 1 -0.7057 -5.1355 0.7698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020122452.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:07 Heat of formation + Delta-G solvation = -20.777216 kcal Electronic energy + Delta-G solvation = -21196.088981 eV Core-core repulsion = 17912.143761 eV Total energy + Delta-G solvation = -3283.945220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.54175 -41.01316 -39.33559 -35.74592 -34.98479 -34.20867 -33.38058 -31.64907 -29.16322 -27.50999 -26.54642 -26.35569 -25.06992 -23.38879 -21.28502 -20.75448 -20.15189 -19.36041 -18.67023 -17.68014 -17.11694 -16.84463 -16.65864 -16.05527 -15.76545 -15.47362 -15.03787 -14.59404 -14.46421 -14.23333 -14.16167 -13.81317 -13.65230 -13.56460 -13.37196 -13.31429 -13.27808 -12.80875 -12.64657 -12.31327 -12.17317 -11.84664 -11.75643 -11.41663 -11.11334 -10.87934 -10.45773 -10.06013 -9.44789 -9.03979 -7.95965 -5.25945 0.61108 1.23255 1.40273 1.47258 1.49661 1.57959 1.86518 2.29001 2.55262 3.35882 3.52463 3.61283 3.73739 3.80054 3.87542 3.99813 4.19427 4.28398 4.32486 4.35808 4.54471 4.62923 4.74114 4.75641 4.77563 4.81153 4.96120 4.97595 5.01983 5.13273 5.18449 5.22233 5.28209 5.46225 5.49994 5.64477 6.06471 6.26278 6.50176 7.17124 7.31004 8.06909 8.28353 9.27586 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033549 B = 0.003342 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.403658 B = 8376.442312 C = 8627.994517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.172 4.172 3 C -0.025 4.025 4 O -0.175 6.175 5 C 0.045 3.955 6 C -0.082 4.082 7 C -0.259 4.259 8 C 0.590 3.410 9 O -0.587 6.587 10 N -0.688 5.688 11 C 0.129 3.871 12 H 0.072 0.928 13 C -0.136 4.136 14 C 0.152 3.848 15 H 0.080 0.920 16 N -0.723 5.723 17 C -0.244 4.244 18 H 0.083 0.917 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.976 3.024 22 H -0.290 1.290 23 H -0.296 1.296 24 H -0.264 1.264 25 C -0.171 4.171 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.039 0.961 29 H 0.250 0.750 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.416 0.584 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.372 0.628 37 H 0.251 0.749 38 H 0.105 0.895 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 24.988 5.985 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.174 4.174 3 C -0.090 4.090 4 O -0.071 6.071 5 C -0.007 4.007 6 C -0.138 4.138 7 C -0.263 4.263 8 C 0.377 3.623 9 O -0.468 6.468 10 N -0.338 5.338 11 C 0.024 3.976 12 H 0.090 0.910 13 C -0.175 4.175 14 C 0.041 3.959 15 H 0.098 0.902 16 N -0.361 5.361 17 C -0.376 4.376 18 H 0.101 0.899 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.805 3.195 22 H -0.217 1.217 23 H -0.223 1.223 24 H -0.188 1.188 25 C -0.212 4.212 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.058 0.942 29 H 0.265 0.735 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.254 0.746 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.203 0.797 37 H 0.060 0.940 38 H 0.123 0.877 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.232 24.627 5.357 25.962 hybrid contribution -0.656 -1.110 -0.489 1.379 sum 5.576 23.516 4.868 24.654 Atomic orbital electron populations 1.20217 0.87872 1.02808 1.03189 1.21628 0.97666 0.90420 1.07651 1.24370 0.78505 1.00682 1.05455 1.83743 1.30420 1.21340 1.71605 1.22877 0.96201 0.81198 1.00468 1.20558 0.90823 0.97600 1.04805 1.21088 0.94827 0.93162 1.17273 1.17749 0.75449 0.85473 0.83627 1.90809 1.53088 1.69351 1.33508 1.45888 1.68231 1.11381 1.08338 1.22301 0.96072 0.80424 0.98838 0.91029 1.23733 0.98155 0.98529 0.97082 1.21235 0.95729 0.84623 0.94312 0.90159 1.42400 1.36822 1.15675 1.41169 1.19726 1.08007 0.95549 1.14313 0.89930 1.25642 1.01395 1.01103 0.98889 1.69841 1.38598 1.27987 1.25797 0.85095 0.78046 0.78164 0.78189 1.21731 1.22309 1.18818 1.24184 0.95732 1.00631 1.00700 0.89723 0.88758 0.94191 0.73459 0.89185 0.87148 0.89460 0.74603 0.91707 0.85634 0.79677 0.94042 0.87693 0.94712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.38 71.24 0.74 -0.78 16 2 C -0.17 -3.60 6.38 -18.49 -0.12 -3.72 16 3 C -0.02 -0.38 11.96 66.89 0.80 0.42 16 4 O -0.17 -3.28 10.52 4.49 0.05 -3.23 16 5 C 0.04 0.95 7.37 25.26 0.19 1.14 16 6 C -0.08 -1.31 10.24 71.24 0.73 -0.58 16 7 C -0.26 -6.74 6.07 -18.99 -0.12 -6.85 16 8 C 0.59 19.17 7.25 86.65 0.63 19.80 16 9 O -0.59 -25.63 16.70 -4.07 -0.07 -25.70 16 10 N -0.69 -18.69 5.35 -443.34 -2.37 -21.06 16 11 C 0.13 4.32 4.12 45.52 0.19 4.51 16 12 H 0.07 3.08 7.46 -2.39 -0.02 3.07 16 13 C -0.14 -4.02 7.58 31.12 0.24 -3.78 16 14 C 0.15 5.79 4.56 45.52 0.21 6.00 16 15 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 16 N -0.72 -37.03 5.31 -320.45 -1.70 -38.73 16 17 C -0.24 -13.67 9.97 84.03 0.84 -12.83 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 20 N -0.97 -61.15 13.06 21.65 0.28 -60.86 16 21 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 24 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 25 C -0.17 -5.97 7.68 31.12 0.24 -5.73 16 26 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.25 1.34 8.06 -2.91 -0.02 1.31 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.47 7.93 -2.39 -0.02 1.45 16 33 H 0.42 8.14 8.71 -92.71 -0.81 7.33 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.13 2.59 8.12 -2.39 -0.02 2.57 16 36 H 0.37 20.85 7.90 -92.71 -0.73 20.12 16 37 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -77.90 338.43 2.77 -75.13 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.47 Total: 32.25 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 5.02 Total: -6.50 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -3.79 Total: -120.65 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.02 Total: -28.93 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -77.90 2.77 -75.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020122452.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.352 kcal (2) G-P(sol) polarization free energy of solvation -77.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds