Wall clock time and date at job start Tue Mar 31 2020 01:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34183 * 127.02194 * 2 1 4 4 O 1.34217 * 109.12192 * 180.02562 * 3 2 1 5 5 C 1.33648 * 110.91044 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.79857 * 180.02562 * 5 4 3 7 7 C 1.36414 * 108.39670 * 0.25975 * 5 4 3 8 8 C 1.47387 * 127.18958 * 179.70201 * 7 5 4 9 9 O 1.21613 * 119.99598 * 90.02599 * 8 7 5 10 10 N 1.34767 * 119.99721 * 270.02163 * 8 7 5 11 11 C 1.46501 * 119.99705 * 180.02562 * 10 8 7 12 12 H 1.08995 * 112.85395 * 333.16809 * 11 10 8 13 13 C 1.53781 * 113.61656 * 104.47558 * 11 10 8 14 14 C 1.53785 * 87.08075 * 89.11355 * 13 11 10 15 15 H 1.09007 * 113.68888 * 139.99074 * 14 13 11 16 16 N 1.46493 * 113.61655 * 270.88523 * 14 13 11 17 17 C 1.36944 * 120.00208 * 181.49940 * 16 14 13 18 18 H 1.07997 * 119.99453 * 359.97438 * 17 16 14 19 19 C 1.38805 * 120.00513 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00446 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99654 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47263 * 90.00112 * 21 19 17 23 23 H 1.48500 * 109.46985 * 210.00311 * 21 19 17 24 24 H 1.48498 * 109.47018 * 330.00027 * 21 19 17 25 25 C 1.53780 * 87.07925 * 25.43442 * 14 13 11 26 26 H 1.09004 * 109.46654 * 89.97655 * 1 2 3 27 27 H 1.09004 * 109.46755 * 209.97529 * 1 2 3 28 28 H 1.08996 * 109.47253 * 329.97621 * 1 2 3 29 29 H 1.07992 * 125.43566 * 0.05512 * 3 2 1 30 30 H 1.08996 * 109.47355 * 0.02562 * 6 5 4 31 31 H 1.08997 * 109.46989 * 120.02495 * 6 5 4 32 32 H 1.09003 * 109.46627 * 240.02106 * 6 5 4 33 33 H 0.96997 * 120.00335 * 0.02562 * 10 8 7 34 34 H 1.08993 * 113.61684 * 203.66631 * 13 11 10 35 35 H 1.09003 * 113.61189 * 334.56963 * 13 11 10 36 36 H 0.97002 * 120.00594 * 1.50134 * 16 14 13 37 37 H 0.96999 * 120.00079 * 179.97438 * 20 19 17 38 38 H 1.09002 * 113.61726 * 220.01383 * 25 14 13 39 39 H 1.09003 * 113.69216 * 89.12773 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0015 6 6 4.9292 -1.4919 -0.0018 7 6 2.3923 -1.1737 -0.0074 8 6 1.9915 -2.5920 -0.0166 9 8 1.8231 -3.1830 1.0328 10 7 1.8114 -3.2338 -1.1879 11 6 1.4125 -4.6434 -1.1970 12 1 1.7307 -5.1792 -0.3028 13 6 -0.0670 -4.8626 -1.5549 14 6 0.3792 -4.9242 -3.0253 15 1 -0.1373 -5.6869 -3.6081 16 7 0.3985 -3.6178 -3.6879 17 6 0.7467 -3.5252 -5.0091 18 1 1.0074 -4.4153 -5.5624 19 6 0.7655 -2.2874 -5.6369 20 7 1.1006 -2.1984 -6.9066 21 14 0.3152 -0.7478 -4.6796 22 1 1.5372 -0.1748 -4.0604 23 1 -0.2872 0.2493 -5.6006 24 1 -0.6625 -1.0939 -3.6169 25 6 1.7559 -5.3723 -2.5068 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8903 0.5135 28 1 -0.3633 0.8897 0.5142 29 1 1.9894 2.1010 0.0008 30 1 5.7912 -0.8248 -0.0007 31 1 4.9560 -2.1216 0.8875 32 1 4.9567 -2.1197 -0.8925 33 1 1.9460 -2.7624 -2.0249 34 1 -0.4718 -5.8032 -1.1816 35 1 -0.7027 -4.0070 -1.3270 36 1 0.1648 -2.8183 -3.1909 37 1 1.1134 -1.3334 -7.3454 38 1 2.5918 -4.9284 -3.0474 39 1 1.8509 -6.4523 -2.3935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022037338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:11 Heat of formation + Delta-G solvation = 9.964418 kcal Electronic energy + Delta-G solvation = -22360.909090 eV Core-core repulsion = 19078.296927 eV Total energy + Delta-G solvation = -3282.612163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.52685 -39.82623 -37.92416 -33.93596 -33.72256 -32.77630 -32.22831 -30.50501 -28.19860 -26.55493 -25.34463 -24.76369 -23.41714 -21.74224 -20.00568 -19.68465 -18.97891 -17.71699 -17.52223 -16.40693 -15.93794 -15.51377 -14.92724 -14.70774 -14.56320 -14.08294 -13.90763 -13.38745 -13.31135 -13.23280 -12.99501 -12.79759 -12.70846 -12.37940 -12.12609 -12.07907 -11.70143 -11.36413 -11.07862 -10.95066 -10.47331 -10.32294 -9.91163 -9.69628 -9.67524 -9.36818 -9.01094 -8.71474 -8.46815 -7.38296 -5.87666 -3.24780 1.63186 2.24517 2.67987 2.84394 3.26632 3.28980 3.35701 3.51466 4.44485 4.47323 4.80758 4.91766 4.97313 5.06026 5.12353 5.23129 5.25325 5.35261 5.35956 5.52643 5.59909 5.62356 5.64733 5.72669 5.85325 5.90820 6.02839 6.13060 6.16069 6.21374 6.40092 6.44929 6.56613 6.71601 6.93709 7.05843 7.79884 7.90418 8.32166 8.41446 9.09110 9.81155 10.00128 11.30230 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.007747 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.895612 B = 3613.484336 C = 4605.592387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.146 4.146 3 C -0.043 4.043 4 O -0.173 6.173 5 C 0.043 3.957 6 C -0.080 4.080 7 C -0.229 4.229 8 C 0.594 3.406 9 O -0.543 6.543 10 N -0.694 5.694 11 C 0.123 3.877 12 H 0.093 0.907 13 C -0.164 4.164 14 C 0.167 3.833 15 H 0.060 0.940 16 N -0.734 5.734 17 C -0.247 4.247 18 H 0.094 0.906 19 C 0.009 3.991 20 N -0.929 5.929 21 Si 0.871 3.129 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.276 1.276 25 C -0.175 4.175 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.207 0.793 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.411 0.589 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.361 0.639 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 2.382 14.340 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C -0.109 4.109 4 O -0.069 6.069 5 C -0.009 4.009 6 C -0.137 4.137 7 C -0.233 4.233 8 C 0.379 3.621 9 O -0.420 6.420 10 N -0.346 5.346 11 C 0.018 3.982 12 H 0.111 0.889 13 C -0.204 4.204 14 C 0.057 3.943 15 H 0.078 0.922 16 N -0.378 5.378 17 C -0.376 4.376 18 H 0.112 0.888 19 C -0.187 4.187 20 N -0.576 5.576 21 Si 0.701 3.299 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.216 4.216 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.223 0.777 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.249 0.751 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.195 0.805 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.490 2.106 14.805 15.355 hybrid contribution -0.517 1.507 0.070 1.594 sum 2.973 3.612 14.874 15.593 Atomic orbital electron populations 1.20241 0.88723 1.02954 1.02737 1.21349 0.96852 0.90633 1.05927 1.23580 0.79643 0.99483 1.08205 1.83701 1.29555 1.21864 1.71820 1.22501 0.96033 0.80832 1.01536 1.20451 0.90987 0.97829 1.04402 1.21038 0.93274 0.94170 1.14865 1.17289 0.76363 0.84566 0.83871 1.90755 1.51677 1.67740 1.31871 1.45948 1.67995 1.11937 1.08709 1.21818 0.95719 0.81406 0.99283 0.88918 1.23740 0.96414 1.02160 0.98041 1.21150 0.93465 0.89041 0.90672 0.92200 1.42619 1.82655 1.02550 1.09935 1.19050 1.38510 0.95171 0.84918 0.88842 1.24653 1.01358 0.96994 0.95675 1.69681 1.54125 1.24128 1.09625 0.86744 0.78656 0.84833 0.79668 1.20677 1.21444 1.20184 1.24002 1.02371 0.99440 0.95758 0.90896 0.91188 0.91069 0.77678 0.89903 0.89130 0.88970 0.75127 0.88975 0.91514 0.80522 0.92921 0.90296 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 10.38 36.00 0.37 -0.83 16 2 C -0.15 -2.21 6.38 -102.49 -0.65 -2.86 16 3 C -0.04 -0.56 11.96 29.30 0.35 -0.21 16 4 O -0.17 -2.45 10.52 7.66 0.08 -2.37 16 5 C 0.04 0.63 7.37 -34.96 -0.26 0.37 16 6 C -0.08 -0.89 10.18 36.01 0.37 -0.52 16 7 C -0.23 -3.79 6.07 -103.27 -0.63 -4.42 16 8 C 0.59 10.51 7.41 -12.54 -0.09 10.42 16 9 O -0.54 -10.81 16.75 5.27 0.09 -10.72 16 10 N -0.69 -11.94 4.97 -54.11 -0.27 -12.21 16 11 C 0.12 1.96 4.28 -67.12 -0.29 1.67 16 12 H 0.09 1.44 7.54 -51.93 -0.39 1.05 16 13 C -0.16 -2.58 7.57 -25.92 -0.20 -2.77 16 14 C 0.17 3.05 4.53 -67.12 -0.30 2.75 16 15 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 16 N -0.73 -16.38 4.15 -52.64 -0.22 -16.60 16 17 C -0.25 -6.61 10.47 -15.06 -0.16 -6.77 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 20 N -0.93 -28.21 13.97 55.49 0.78 -27.44 16 21 Si 0.87 21.15 27.74 -169.99 -4.71 16.44 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 25 C -0.17 -2.79 7.62 -25.92 -0.20 -2.99 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.21 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.41 7.60 7.19 -40.82 -0.29 7.30 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 36 H 0.36 8.04 4.94 -40.82 -0.20 7.84 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -32.50 332.21 -6.58 -39.09 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -5.55 Total: 14.79 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.78 Total: -5.99 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.29 Total: -56.24 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.17 Total: -13.09 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.44 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.50 -6.58 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022037338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.051 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds