Wall clock time and date at job start Tue Mar 31 2020 01:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34183 * 127.02194 * 2 1 4 4 O 1.34217 * 109.12192 * 180.02562 * 3 2 1 5 5 C 1.33648 * 110.91044 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.79857 * 180.02562 * 5 4 3 7 7 C 1.36414 * 108.39670 * 0.25975 * 5 4 3 8 8 C 1.47387 * 127.18958 * 179.70201 * 7 5 4 9 9 O 1.21613 * 119.99598 * 90.02599 * 8 7 5 10 10 N 1.34767 * 119.99721 * 270.02163 * 8 7 5 11 11 C 1.46501 * 119.99705 * 180.02562 * 10 8 7 12 12 H 1.08995 * 112.85395 * 333.16809 * 11 10 8 13 13 C 1.53781 * 113.61656 * 104.47558 * 11 10 8 14 14 C 1.53785 * 87.08075 * 89.11355 * 13 11 10 15 15 H 1.09007 * 113.68888 * 139.99074 * 14 13 11 16 16 N 1.46493 * 113.61655 * 270.88523 * 14 13 11 17 17 C 1.36944 * 120.00208 * 181.49940 * 16 14 13 18 18 H 1.07997 * 119.99453 * 359.97438 * 17 16 14 19 19 C 1.38805 * 120.00513 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00446 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99654 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47263 * 90.00112 * 21 19 17 23 23 H 1.48500 * 109.46985 * 210.00311 * 21 19 17 24 24 H 1.48498 * 109.47018 * 330.00027 * 21 19 17 25 25 C 1.53780 * 87.07925 * 25.43442 * 14 13 11 26 26 H 1.09004 * 109.46654 * 89.97655 * 1 2 3 27 27 H 1.09004 * 109.46755 * 209.97529 * 1 2 3 28 28 H 1.08996 * 109.47253 * 329.97621 * 1 2 3 29 29 H 1.07992 * 125.43566 * 0.05512 * 3 2 1 30 30 H 1.08996 * 109.47355 * 0.02562 * 6 5 4 31 31 H 1.08997 * 109.46989 * 120.02495 * 6 5 4 32 32 H 1.09003 * 109.46627 * 240.02106 * 6 5 4 33 33 H 0.96997 * 120.00335 * 0.02562 * 10 8 7 34 34 H 1.08993 * 113.61684 * 203.66631 * 13 11 10 35 35 H 1.09003 * 113.61189 * 334.56963 * 13 11 10 36 36 H 0.97002 * 120.00594 * 1.50134 * 16 14 13 37 37 H 0.96999 * 120.00079 * 179.97438 * 20 19 17 38 38 H 1.09002 * 113.61726 * 220.01383 * 25 14 13 39 39 H 1.09003 * 113.69216 * 89.12773 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0015 6 6 4.9292 -1.4919 -0.0018 7 6 2.3923 -1.1737 -0.0074 8 6 1.9915 -2.5920 -0.0166 9 8 1.8231 -3.1830 1.0328 10 7 1.8114 -3.2338 -1.1879 11 6 1.4125 -4.6434 -1.1970 12 1 1.7307 -5.1792 -0.3028 13 6 -0.0670 -4.8626 -1.5549 14 6 0.3792 -4.9242 -3.0253 15 1 -0.1373 -5.6869 -3.6081 16 7 0.3985 -3.6178 -3.6879 17 6 0.7467 -3.5252 -5.0091 18 1 1.0074 -4.4153 -5.5624 19 6 0.7655 -2.2874 -5.6369 20 7 1.1006 -2.1984 -6.9066 21 14 0.3152 -0.7478 -4.6796 22 1 1.5372 -0.1748 -4.0604 23 1 -0.2872 0.2493 -5.6006 24 1 -0.6625 -1.0939 -3.6169 25 6 1.7559 -5.3723 -2.5068 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8903 0.5135 28 1 -0.3633 0.8897 0.5142 29 1 1.9894 2.1010 0.0008 30 1 5.7912 -0.8248 -0.0007 31 1 4.9560 -2.1216 0.8875 32 1 4.9567 -2.1197 -0.8925 33 1 1.9460 -2.7624 -2.0249 34 1 -0.4718 -5.8032 -1.1816 35 1 -0.7027 -4.0070 -1.3270 36 1 0.1648 -2.8183 -3.1909 37 1 1.1134 -1.3334 -7.3454 38 1 2.5918 -4.9284 -3.0474 39 1 1.8509 -6.4523 -2.3935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022037338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:10 Heat of formation + Delta-G solvation = -11.651938 kcal Electronic energy + Delta-G solvation = -22361.846445 eV Core-core repulsion = 19078.296927 eV Total energy + Delta-G solvation = -3283.549519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.59219 -41.20060 -39.34528 -35.56955 -35.03846 -34.14182 -33.40398 -32.41803 -29.23382 -27.57943 -26.73210 -26.29453 -24.96457 -23.22178 -21.23805 -20.82984 -20.44408 -19.53079 -18.80057 -17.58865 -17.15505 -16.77026 -16.58186 -16.16813 -15.97793 -15.65475 -15.15902 -14.83404 -14.56973 -14.36020 -14.25117 -13.89490 -13.86363 -13.65523 -13.37058 -13.34110 -13.27811 -12.88840 -12.61476 -12.37870 -12.14653 -11.96865 -11.83072 -11.26841 -11.12259 -10.91613 -10.51538 -10.10609 -9.51087 -9.31596 -8.04404 -5.38243 0.55754 1.15608 1.32927 1.34029 1.34863 1.41289 1.83151 2.24877 2.43291 3.26009 3.44618 3.48973 3.67637 3.69420 3.78920 3.95112 4.12418 4.14532 4.29466 4.31597 4.50980 4.56270 4.63035 4.68990 4.79310 4.86459 4.87244 4.91664 4.94255 5.00977 5.14670 5.21136 5.30875 5.37602 5.56077 5.80634 5.99631 6.20515 6.41580 7.04413 7.05433 7.80997 7.98456 9.16740 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.007747 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.895612 B = 3613.484336 C = 4605.592387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.176 4.176 3 C -0.031 4.031 4 O -0.176 6.176 5 C 0.041 3.959 6 C -0.081 4.081 7 C -0.267 4.267 8 C 0.599 3.401 9 O -0.570 6.570 10 N -0.694 5.694 11 C 0.121 3.879 12 H 0.103 0.897 13 C -0.148 4.148 14 C 0.146 3.854 15 H 0.060 0.940 16 N -0.736 5.736 17 C -0.225 4.225 18 H 0.064 0.936 19 C -0.056 4.056 20 N -0.979 5.979 21 Si 0.936 3.064 22 H -0.275 1.275 23 H -0.297 1.297 24 H -0.257 1.257 25 C -0.159 4.159 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.248 0.752 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.404 0.596 34 H 0.126 0.874 35 H 0.056 0.944 36 H 0.362 0.638 37 H 0.257 0.743 38 H 0.057 0.943 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.278 2.977 16.319 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.178 4.178 3 C -0.097 4.097 4 O -0.072 6.072 5 C -0.011 4.011 6 C -0.137 4.137 7 C -0.271 4.271 8 C 0.386 3.614 9 O -0.450 6.450 10 N -0.345 5.345 11 C 0.016 3.984 12 H 0.120 0.880 13 C -0.187 4.187 14 C 0.037 3.963 15 H 0.078 0.922 16 N -0.380 5.380 17 C -0.356 4.356 18 H 0.082 0.918 19 C -0.248 4.248 20 N -0.629 5.629 21 Si 0.764 3.236 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.182 1.182 25 C -0.200 4.200 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.264 0.736 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.241 0.759 34 H 0.144 0.856 35 H 0.074 0.926 36 H 0.196 0.804 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.447 2.657 16.832 17.386 hybrid contribution -0.489 1.209 -0.542 1.412 sum 2.959 3.865 16.290 17.002 Atomic orbital electron populations 1.20244 0.87960 1.03812 1.02311 1.21682 0.97766 0.90789 1.07584 1.24372 0.78760 1.00790 1.05747 1.83731 1.30266 1.21607 1.71575 1.23029 0.96577 0.81194 1.00275 1.20591 0.90520 0.98008 1.04605 1.21216 0.94770 0.93963 1.17198 1.17439 0.75544 0.85035 0.83375 1.90725 1.53102 1.68566 1.32632 1.46006 1.67771 1.12401 1.08276 1.21930 0.96006 0.80947 0.99511 0.87950 1.23724 0.96053 1.03491 0.95388 1.21459 0.95511 0.87223 0.92081 0.92229 1.42574 1.82600 1.04370 1.08448 1.18990 1.36169 0.93939 0.86473 0.91799 1.25354 1.02589 1.00262 0.96569 1.69852 1.56783 1.24624 1.11634 0.85681 0.78813 0.80616 0.78462 1.20061 1.22347 1.18159 1.23914 0.99724 1.01348 0.94973 0.91857 0.92629 0.87985 0.73603 0.87532 0.88540 0.88987 0.75914 0.85555 0.92551 0.80372 0.93372 0.92392 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.17 10.38 71.24 0.74 -1.44 16 2 C -0.18 -5.03 6.38 -18.49 -0.12 -5.15 16 3 C -0.03 -0.73 11.96 66.89 0.80 0.07 16 4 O -0.18 -4.58 10.52 4.48 0.05 -4.53 16 5 C 0.04 1.15 7.37 25.26 0.19 1.33 16 6 C -0.08 -1.67 10.18 71.24 0.72 -0.94 16 7 C -0.27 -8.57 6.07 -18.99 -0.12 -8.68 16 8 C 0.60 20.78 7.41 86.65 0.64 21.43 16 9 O -0.57 -22.33 16.75 -4.07 -0.07 -22.40 16 10 N -0.69 -23.22 4.97 -443.35 -2.20 -25.42 16 11 C 0.12 3.63 4.28 45.52 0.19 3.82 16 12 H 0.10 2.94 7.54 -2.39 -0.02 2.92 16 13 C -0.15 -4.27 7.57 31.12 0.24 -4.03 16 14 C 0.15 5.11 4.53 45.52 0.21 5.32 16 15 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 16 N -0.74 -32.38 4.15 -320.45 -1.33 -33.71 16 17 C -0.22 -12.17 10.47 84.03 0.88 -11.29 16 18 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 19 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 20 N -0.98 -60.99 13.97 21.65 0.30 -60.69 16 21 Si 0.94 44.03 27.74 68.60 1.90 45.93 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 24 H -0.26 -11.08 6.52 99.48 0.65 -10.43 16 25 C -0.16 -4.79 7.62 31.12 0.24 -4.55 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.25 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 33 H 0.40 14.70 7.19 -92.71 -0.67 14.04 16 34 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 36 H 0.36 15.74 4.94 -92.71 -0.46 15.28 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -71.50 332.21 3.62 -67.88 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.11 Total: 39.78 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 5.08 Total: -6.84 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -3.23 Total: -119.82 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.02 Total: -26.94 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.93 kcal Total: -71.50 3.62 -67.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022037338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.232 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds