Wall clock time and date at job start Tue Mar 31 2020 00:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35134 * 125.61109 * 2 1 4 4 C 1.40363 * 107.11116 * 179.78402 * 3 2 1 5 5 C 1.36543 * 106.70911 * 0.35549 * 4 3 2 6 6 C 1.46658 * 125.98777 * 179.91034 * 5 4 3 7 7 O 1.21696 * 120.00041 * 359.71268 * 6 5 4 8 8 N 1.34781 * 120.00216 * 179.71046 * 6 5 4 9 9 C 1.46489 * 120.00307 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47408 * 173.21116 * 9 8 6 11 11 H 1.09003 * 109.87022 * 57.35575 * 10 9 8 12 12 C 1.54322 * 109.88346 * 178.36833 * 10 9 8 13 13 C 1.55158 * 102.94269 * 141.61165 * 12 10 9 14 14 C 1.54906 * 101.57966 * 324.49832 * 13 12 10 15 15 N 1.47020 * 109.88239 * 296.18065 * 10 9 8 16 16 C 1.36935 * 125.64968 * 61.60411 * 15 10 9 17 17 H 1.07998 * 119.99744 * 324.43321 * 16 15 10 18 18 C 1.38807 * 120.00070 * 144.44217 * 16 15 10 19 19 N 1.31618 * 120.00138 * 162.72053 * 18 16 15 20 20 Si 1.86802 * 119.99932 * 342.71506 * 18 16 15 21 21 H 1.48505 * 109.46671 * 95.08613 * 20 18 16 22 22 H 1.48502 * 109.47224 * 215.08487 * 20 18 16 23 23 H 1.48495 * 109.47246 * 335.08768 * 20 18 16 24 24 O 1.33928 * 125.62034 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47445 * 299.96710 * 1 2 3 27 27 H 1.08999 * 109.47602 * 59.97722 * 1 2 3 28 28 H 1.07998 * 126.44253 * 0.02562 * 3 2 1 29 29 H 1.08003 * 126.64831 * 180.22012 * 4 3 2 30 30 H 0.97003 * 119.99374 * 0.02562 * 8 6 5 31 31 H 1.09000 * 109.47422 * 53.21144 * 9 8 6 32 32 H 1.09001 * 109.47796 * 293.21505 * 9 8 6 33 33 H 1.08995 * 110.72059 * 259.97460 * 12 10 9 34 34 H 1.09002 * 110.72330 * 23.24830 * 12 10 9 35 35 H 1.08999 * 111.00088 * 82.56782 * 13 12 10 36 36 H 1.08999 * 111.00505 * 206.42480 * 13 12 10 37 37 H 1.09002 * 110.37093 * 278.16707 * 14 13 12 38 38 H 1.09007 * 110.36971 * 155.84580 * 14 13 12 39 39 H 0.97007 * 120.00217 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0986 0.0000 4 6 3.6249 0.6533 0.0051 5 6 3.5823 -0.7115 -0.0002 6 6 4.7415 -1.6099 0.0005 7 8 5.8680 -1.1497 0.0008 8 7 4.5591 -2.9453 0.0007 9 6 5.7169 -3.8428 0.0008 10 6 5.2426 -5.2873 0.1717 11 1 4.5410 -5.5433 -0.6223 12 6 6.4520 -6.2450 0.1321 13 6 6.0911 -7.3053 1.2059 14 6 5.3635 -6.4400 2.2649 15 7 4.5993 -5.4505 1.4835 16 6 3.4767 -4.7920 1.9094 17 1 3.3069 -3.7674 1.6134 18 6 2.5573 -5.4413 2.7217 19 7 1.6743 -4.7438 3.4044 20 14 2.5732 -7.3052 2.8457 21 1 3.3720 -7.7157 4.0284 22 1 1.1818 -7.8035 2.9910 23 1 3.1783 -7.8780 1.6166 24 8 2.2870 -1.0887 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5133 0.8903 27 1 -0.3634 0.5142 -0.8897 28 1 1.9611 2.1261 0.0004 29 1 4.5112 1.2704 0.0097 30 1 3.6611 -3.3121 0.0001 31 1 6.3812 -3.5788 0.8237 32 1 6.2523 -3.7454 -0.9436 33 1 6.5456 -6.7076 -0.8504 34 1 7.3687 -5.7201 0.4012 35 1 5.4245 -8.0644 0.7967 36 1 6.9894 -7.7601 1.6233 37 1 6.0872 -5.9388 2.9076 38 1 4.6892 -7.0560 2.8599 39 1 1.0315 -5.1977 3.9717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027737983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:19 Heat of formation + Delta-G solvation = 6.086344 kcal Electronic energy + Delta-G solvation = -22092.727197 eV Core-core repulsion = 18809.946868 eV Total energy + Delta-G solvation = -3282.780329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.40577 -39.13448 -37.82333 -34.16805 -32.97572 -32.67009 -31.78857 -29.99889 -29.59875 -27.07487 -24.92714 -23.80710 -21.82554 -21.32574 -20.74810 -19.87291 -19.54923 -18.04564 -16.61922 -16.31579 -16.08690 -15.47661 -15.10720 -14.71223 -14.37491 -13.77451 -13.51182 -13.10514 -13.06615 -12.85945 -12.82188 -12.71267 -12.51896 -12.32898 -11.98764 -11.77931 -11.36047 -11.29546 -10.94606 -10.75777 -10.51039 -10.21653 -9.89991 -9.78120 -9.75694 -9.55249 -8.65472 -8.52997 -8.14838 -6.87876 -6.03475 -3.48841 1.38479 2.55088 2.94018 3.28314 3.41831 3.46854 3.59915 3.76065 4.47476 4.81092 4.89894 5.11164 5.12267 5.19395 5.30874 5.42779 5.43024 5.48100 5.50518 5.72801 5.79823 5.87052 5.91677 6.02617 6.06236 6.09813 6.19224 6.23952 6.30598 6.36886 6.55395 6.59553 6.81658 6.83429 6.92317 7.18546 7.83636 8.04242 8.28080 8.58334 8.77244 9.60141 10.18189 11.10702 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.006262 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.566653 B = 4470.047161 C = 5808.170027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.019 3.981 3 C -0.231 4.231 4 C -0.130 4.130 5 C -0.067 4.067 6 C 0.597 3.403 7 O -0.542 6.542 8 N -0.694 5.694 9 C 0.114 3.886 10 C 0.142 3.858 11 H 0.049 0.951 12 C -0.120 4.120 13 C -0.136 4.136 14 C 0.118 3.882 15 N -0.601 5.601 16 C -0.258 4.258 17 H 0.092 0.908 18 C 0.035 3.965 19 N -0.900 5.900 20 Si 0.890 3.110 21 H -0.288 1.288 22 H -0.304 1.304 23 H -0.268 1.268 24 O -0.150 6.150 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.417 0.583 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.032 0.968 38 H 0.041 0.959 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 4.484 -8.299 9.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 C -0.250 4.250 4 C -0.150 4.150 5 C -0.120 4.120 6 C 0.383 3.617 7 O -0.423 6.423 8 N -0.346 5.346 9 C -0.011 4.011 10 C 0.035 3.965 11 H 0.067 0.933 12 C -0.159 4.159 13 C -0.174 4.174 14 C -0.006 4.006 15 N -0.327 5.327 16 C -0.386 4.386 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.541 5.541 20 Si 0.722 3.278 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.193 1.193 24 O -0.045 6.045 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.170 0.830 29 H 0.174 0.826 30 H 0.257 0.743 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.919 4.486 -8.152 9.501 hybrid contribution -0.485 -0.975 0.407 1.163 sum 1.433 3.511 -7.746 8.624 Atomic orbital electron populations 1.20394 0.84880 1.04770 1.03465 1.22786 0.94339 0.84177 1.02063 1.21477 0.92414 0.99501 1.11572 1.21833 0.98348 0.92949 1.01900 1.22158 0.82119 0.94608 1.13085 1.16576 0.85812 0.82025 0.77322 1.90807 1.22150 1.76569 1.52761 1.46157 1.12073 1.04787 1.71534 1.22025 0.87889 0.90610 1.00590 1.21286 0.93587 0.91274 0.90341 0.93335 1.22484 0.97732 0.96719 0.98957 1.22781 0.99789 0.97603 0.97249 1.21888 0.93903 0.91179 0.93659 1.44689 1.28932 1.49367 1.09743 1.18686 0.95131 0.95071 1.29697 0.89125 1.25426 0.95439 0.97703 0.98005 1.69816 1.20814 1.35214 1.28278 0.86690 0.75309 0.87656 0.78162 1.21600 1.23213 1.19348 1.84113 1.15911 1.34648 1.69869 0.89913 0.89318 0.89605 0.83042 0.82627 0.74299 0.91301 0.92517 0.91335 0.91182 0.91570 0.91501 0.95056 0.94172 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.41 36.00 0.37 -0.46 16 2 C 0.02 0.29 7.31 -35.41 -0.26 0.03 16 3 C -0.23 -3.22 10.77 -39.89 -0.43 -3.65 16 4 C -0.13 -2.11 10.62 -39.39 -0.42 -2.53 16 5 C -0.07 -1.27 7.13 -36.80 -0.26 -1.53 16 6 C 0.60 12.15 7.79 -12.86 -0.10 12.05 16 7 O -0.54 -11.93 16.84 5.19 0.09 -11.84 16 8 N -0.69 -13.80 4.33 -61.63 -0.27 -14.07 16 9 C 0.11 2.11 5.16 -4.05 -0.02 2.09 16 10 C 0.14 2.66 3.31 -66.95 -0.22 2.44 16 11 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 12 C -0.12 -1.82 6.48 -24.90 -0.16 -1.99 16 13 C -0.14 -2.25 7.09 -24.58 -0.17 -2.42 16 14 C 0.12 2.48 6.19 -2.53 -0.02 2.47 16 15 N -0.60 -13.77 2.68 -162.57 -0.44 -14.21 16 16 C -0.26 -6.91 9.51 -15.06 -0.14 -7.05 16 17 H 0.09 2.54 5.49 -52.49 -0.29 2.25 16 18 C 0.04 0.99 5.45 -17.43 -0.10 0.90 16 19 N -0.90 -26.81 13.97 55.49 0.78 -26.03 16 20 Si 0.89 22.05 24.78 -169.99 -4.21 17.84 16 21 H -0.29 -7.08 6.87 56.52 0.39 -6.69 16 22 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 23 H -0.27 -6.41 6.99 56.52 0.40 -6.02 16 24 O -0.15 -2.78 10.40 5.02 0.05 -2.73 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.16 2.29 8.06 -52.48 -0.42 1.87 16 30 H 0.42 8.64 6.06 -40.82 -0.25 8.39 16 31 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.92 3.18 -51.92 -0.17 0.76 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -32.22 319.58 -6.45 -38.66 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.33 Total: 7.20 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.93 Total: 0.35 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.07 Total: -54.31 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.14 Total: -14.56 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.21 Total: 17.84 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.22 -6.45 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027737983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.748 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds