Wall clock time and date at job start Tue Mar 31 2020 00:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35134 * 125.61109 * 2 1 4 4 C 1.40363 * 107.11116 * 179.78402 * 3 2 1 5 5 C 1.36543 * 106.70911 * 0.35549 * 4 3 2 6 6 C 1.46658 * 125.98777 * 179.91034 * 5 4 3 7 7 O 1.21696 * 120.00041 * 359.71268 * 6 5 4 8 8 N 1.34781 * 120.00216 * 179.71046 * 6 5 4 9 9 C 1.46489 * 120.00307 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47408 * 173.21116 * 9 8 6 11 11 H 1.09003 * 109.87022 * 57.35575 * 10 9 8 12 12 C 1.54322 * 109.88346 * 178.36833 * 10 9 8 13 13 C 1.55158 * 102.94269 * 141.61165 * 12 10 9 14 14 C 1.54906 * 101.57966 * 324.49832 * 13 12 10 15 15 N 1.47020 * 109.88239 * 296.18065 * 10 9 8 16 16 C 1.36935 * 125.64968 * 61.60411 * 15 10 9 17 17 H 1.07998 * 119.99744 * 324.43321 * 16 15 10 18 18 C 1.38807 * 120.00070 * 144.44217 * 16 15 10 19 19 N 1.31618 * 120.00138 * 162.72053 * 18 16 15 20 20 Si 1.86802 * 119.99932 * 342.71506 * 18 16 15 21 21 H 1.48505 * 109.46671 * 95.08613 * 20 18 16 22 22 H 1.48502 * 109.47224 * 215.08487 * 20 18 16 23 23 H 1.48495 * 109.47246 * 335.08768 * 20 18 16 24 24 O 1.33928 * 125.62034 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47445 * 299.96710 * 1 2 3 27 27 H 1.08999 * 109.47602 * 59.97722 * 1 2 3 28 28 H 1.07998 * 126.44253 * 0.02562 * 3 2 1 29 29 H 1.08003 * 126.64831 * 180.22012 * 4 3 2 30 30 H 0.97003 * 119.99374 * 0.02562 * 8 6 5 31 31 H 1.09000 * 109.47422 * 53.21144 * 9 8 6 32 32 H 1.09001 * 109.47796 * 293.21505 * 9 8 6 33 33 H 1.08995 * 110.72059 * 259.97460 * 12 10 9 34 34 H 1.09002 * 110.72330 * 23.24830 * 12 10 9 35 35 H 1.08999 * 111.00088 * 82.56782 * 13 12 10 36 36 H 1.08999 * 111.00505 * 206.42480 * 13 12 10 37 37 H 1.09002 * 110.37093 * 278.16707 * 14 13 12 38 38 H 1.09007 * 110.36971 * 155.84580 * 14 13 12 39 39 H 0.97007 * 120.00217 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0986 0.0000 4 6 3.6249 0.6533 0.0051 5 6 3.5823 -0.7115 -0.0002 6 6 4.7415 -1.6099 0.0005 7 8 5.8680 -1.1497 0.0008 8 7 4.5591 -2.9453 0.0007 9 6 5.7169 -3.8428 0.0008 10 6 5.2426 -5.2873 0.1717 11 1 4.5410 -5.5433 -0.6223 12 6 6.4520 -6.2450 0.1321 13 6 6.0911 -7.3053 1.2059 14 6 5.3635 -6.4400 2.2649 15 7 4.5993 -5.4505 1.4835 16 6 3.4767 -4.7920 1.9094 17 1 3.3069 -3.7674 1.6134 18 6 2.5573 -5.4413 2.7217 19 7 1.6743 -4.7438 3.4044 20 14 2.5732 -7.3052 2.8457 21 1 3.3720 -7.7157 4.0284 22 1 1.1818 -7.8035 2.9910 23 1 3.1783 -7.8780 1.6166 24 8 2.2870 -1.0887 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5133 0.8903 27 1 -0.3634 0.5142 -0.8897 28 1 1.9611 2.1261 0.0004 29 1 4.5112 1.2704 0.0097 30 1 3.6611 -3.3121 0.0001 31 1 6.3812 -3.5788 0.8237 32 1 6.2523 -3.7454 -0.9436 33 1 6.5456 -6.7076 -0.8504 34 1 7.3687 -5.7201 0.4012 35 1 5.4245 -8.0644 0.7967 36 1 6.9894 -7.7601 1.6233 37 1 6.0872 -5.9388 2.9076 38 1 4.6892 -7.0560 2.8599 39 1 1.0315 -5.1977 3.9717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027737983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:19 Heat of formation + Delta-G solvation = -15.840702 kcal Electronic energy + Delta-G solvation = -22093.678025 eV Core-core repulsion = 18809.946868 eV Total energy + Delta-G solvation = -3283.731157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.68282 -40.69822 -39.39451 -35.71191 -34.64736 -34.20952 -32.95130 -31.78833 -31.06299 -28.30333 -26.54195 -25.50014 -23.25132 -22.61766 -22.13263 -21.44348 -20.95945 -19.64559 -18.38724 -17.95927 -17.47899 -17.05055 -16.52075 -16.27167 -15.87290 -15.31519 -15.11374 -14.86530 -14.24969 -14.11068 -14.03761 -13.93355 -13.91465 -13.69334 -13.63575 -13.05694 -12.96368 -12.80723 -12.65841 -12.27271 -12.14646 -11.75730 -11.52020 -11.39011 -11.31875 -11.02309 -10.69255 -10.12928 -9.42613 -8.77140 -8.17007 -5.58402 0.02578 1.29778 1.36129 1.38943 1.50617 1.68309 2.11189 2.30605 2.43731 3.04939 3.33787 3.64016 3.88540 3.92764 3.96247 3.98498 4.12666 4.30363 4.45177 4.50072 4.60066 4.64244 4.72290 4.72978 4.73429 4.82605 4.94294 4.98073 5.00355 5.12670 5.13236 5.29720 5.39642 5.47631 5.50180 5.86894 5.92720 6.19913 6.46459 6.81696 7.01552 7.54332 8.19996 9.00836 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.006262 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.566653 B = 4470.047161 C = 5808.170027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.015 3.985 3 C -0.225 4.225 4 C -0.120 4.120 5 C -0.115 4.115 6 C 0.592 3.408 7 O -0.568 6.568 8 N -0.698 5.698 9 C 0.117 3.883 10 C 0.138 3.862 11 H 0.050 0.950 12 C -0.109 4.109 13 C -0.125 4.125 14 C 0.104 3.896 15 N -0.618 5.618 16 C -0.242 4.242 17 H 0.068 0.932 18 C -0.025 4.025 19 N -0.949 5.949 20 Si 0.952 3.048 21 H -0.288 1.288 22 H -0.313 1.313 23 H -0.252 1.252 24 O -0.179 6.179 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.192 0.808 29 H 0.168 0.832 30 H 0.411 0.589 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.029 0.971 38 H 0.022 0.978 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 4.150 -9.754 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.038 4.038 3 C -0.244 4.244 4 C -0.140 4.140 5 C -0.166 4.166 6 C 0.380 3.620 7 O -0.452 6.452 8 N -0.348 5.348 9 C -0.008 4.008 10 C 0.032 3.968 11 H 0.068 0.932 12 C -0.147 4.147 13 C -0.163 4.163 14 C -0.020 4.020 15 N -0.345 5.345 16 C -0.371 4.371 17 H 0.085 0.915 18 C -0.221 4.221 19 N -0.594 5.594 20 Si 0.782 3.218 21 H -0.216 1.216 22 H -0.243 1.243 23 H -0.176 1.176 24 O -0.075 6.075 25 H 0.090 0.910 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.209 0.791 29 H 0.186 0.814 30 H 0.250 0.750 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.047 0.953 38 H 0.039 0.961 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.704 4.129 -9.640 10.830 hybrid contribution -0.728 -0.718 0.838 1.322 sum 1.976 3.411 -8.802 9.644 Atomic orbital electron populations 1.20649 0.81907 1.04881 1.05991 1.23797 0.96085 0.83704 1.00190 1.21904 0.90893 1.01094 1.10475 1.22203 1.00063 0.92094 0.99683 1.22042 0.82150 0.95333 1.17080 1.16838 0.86218 0.82257 0.76714 1.90762 1.23157 1.76959 1.54283 1.46241 1.12080 1.05080 1.71427 1.22062 0.87321 0.90287 1.01107 1.21529 0.95017 0.92179 0.88115 0.93186 1.22521 0.96260 0.95388 1.00504 1.22754 1.00533 0.97073 0.95923 1.22077 0.93656 0.91263 0.94959 1.44844 1.28229 1.49354 1.12024 1.18714 0.95903 0.94531 1.27948 0.91483 1.26043 0.95793 1.01615 0.98643 1.69947 1.22513 1.36689 1.30244 0.85702 0.74563 0.82878 0.78645 1.21555 1.24255 1.17597 1.84089 1.16131 1.36537 1.70743 0.91034 0.87427 0.86155 0.79065 0.81442 0.75042 0.93195 0.89927 0.87846 0.89671 0.91542 0.88102 0.95340 0.96054 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.41 71.24 0.74 -0.78 16 2 C 0.01 0.43 7.31 24.97 0.18 0.61 16 3 C -0.23 -5.85 10.77 22.07 0.24 -5.62 16 4 C -0.12 -3.85 10.62 22.39 0.24 -3.61 16 5 C -0.11 -4.44 7.13 24.07 0.17 -4.27 16 6 C 0.59 25.00 7.79 86.44 0.67 25.68 16 7 O -0.57 -25.66 16.84 -4.33 -0.07 -25.73 16 8 N -0.70 -28.65 4.33 -467.11 -2.02 -30.67 16 9 C 0.12 4.27 5.16 86.38 0.45 4.72 16 10 C 0.14 4.93 3.31 45.34 0.15 5.08 16 11 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 12 C -0.11 -2.86 6.48 31.78 0.21 -2.66 16 13 C -0.12 -3.65 7.09 31.99 0.23 -3.42 16 14 C 0.10 4.24 6.19 86.85 0.54 4.78 16 15 N -0.62 -28.08 2.68 -668.25 -1.79 -29.87 16 16 C -0.24 -13.27 9.51 84.03 0.80 -12.47 16 17 H 0.07 3.95 5.49 -2.91 -0.02 3.94 16 18 C -0.02 -1.42 5.45 84.86 0.46 -0.96 16 19 N -0.95 -58.78 13.97 21.65 0.30 -58.48 16 20 Si 0.95 46.39 24.78 68.60 1.70 48.09 16 21 H -0.29 -13.81 6.87 99.48 0.68 -13.12 16 22 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 23 H -0.25 -11.40 6.99 99.48 0.70 -10.70 16 24 O -0.18 -6.81 10.40 -4.97 -0.05 -6.86 16 25 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.19 3.31 8.06 -2.91 -0.02 3.28 16 29 H 0.17 4.82 8.06 -2.91 -0.02 4.80 16 30 H 0.41 17.86 6.06 -92.71 -0.56 17.29 16 31 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 32 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.03 7.85 -2.39 -0.02 2.01 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 38 H 0.02 0.96 3.18 -2.38 -0.01 0.95 16 39 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -73.28 319.58 3.61 -69.68 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.47 Total: 26.77 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.07 Total: 7.08 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -3.51 Total: -119.02 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.12 Total: -32.60 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.70 Total: 48.09 kcal Total: -73.28 3.61 -69.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027737983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.835 kcal (2) G-P(sol) polarization free energy of solvation -73.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds