Wall clock time and date at job start Tue Mar 31 2020 00:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35130 * 125.61454 * 2 1 4 4 C 1.40369 * 107.11418 * 180.02562 * 3 2 1 5 5 C 1.36543 * 106.70528 * 0.02562 * 4 3 2 6 6 C 1.46660 * 125.98280 * 180.02562 * 5 4 3 7 7 O 1.21688 * 120.00142 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99780 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00116 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47295 * 185.94714 * 9 8 6 11 11 H 1.08998 * 109.87487 * 300.87839 * 10 9 8 12 12 C 1.54329 * 109.88306 * 179.86272 * 10 9 8 13 13 C 1.55159 * 102.94053 * 218.39074 * 12 10 9 14 14 C 1.54910 * 101.58536 * 35.50342 * 13 12 10 15 15 N 1.47021 * 109.88088 * 62.05608 * 10 9 8 16 16 C 1.36938 * 125.64871 * 298.33406 * 15 10 9 17 17 H 1.07997 * 120.00224 * 335.97397 * 16 15 10 18 18 C 1.38810 * 119.99997 * 155.96941 * 16 15 10 19 19 N 1.31625 * 119.99920 * 159.46778 * 18 16 15 20 20 Si 1.86796 * 120.00254 * 339.47074 * 18 16 15 21 21 H 1.48501 * 109.47121 * 84.66480 * 20 18 16 22 22 H 1.48501 * 109.47572 * 204.66378 * 20 18 16 23 23 H 1.48496 * 109.47156 * 324.66598 * 20 18 16 24 24 O 1.33931 * 125.61687 * 179.70205 * 2 1 3 25 25 H 1.09007 * 109.47005 * 89.99496 * 1 2 3 26 26 H 1.08997 * 109.46993 * 209.99240 * 1 2 3 27 27 H 1.08997 * 109.47003 * 329.99815 * 1 2 3 28 28 H 1.07999 * 126.44634 * 359.97340 * 3 2 1 29 29 H 1.07996 * 126.64281 * 179.97438 * 4 3 2 30 30 H 0.97005 * 120.00034 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.47494 * 305.94640 * 9 8 6 32 32 H 1.09004 * 109.47334 * 65.95100 * 9 8 6 33 33 H 1.08995 * 110.71621 * 336.75186 * 12 10 9 34 34 H 1.09000 * 110.71886 * 100.03112 * 12 10 9 35 35 H 1.09007 * 111.00445 * 153.57517 * 13 12 10 36 36 H 1.08997 * 111.00749 * 277.42465 * 13 12 10 37 37 H 1.08995 * 110.36818 * 81.82191 * 14 13 12 38 38 H 1.08998 * 110.37211 * 204.04409 * 14 13 12 39 39 H 0.97000 * 120.00026 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7415 -1.6101 -0.0019 7 8 5.8680 -1.1499 -0.0018 8 7 4.5591 -2.9454 -0.0023 9 6 5.7169 -3.8429 -0.0032 10 6 5.2410 -5.2893 -0.1530 11 1 4.5714 -5.5460 0.6679 12 6 6.4542 -6.2432 -0.1585 13 6 6.0553 -7.3065 -1.2157 14 6 5.2845 -6.4456 -2.2474 15 7 4.5480 -5.4570 -1.4387 16 6 3.4070 -4.8036 -1.8216 17 1 2.7317 -4.4134 -1.0746 18 6 3.1186 -4.6428 -3.1698 19 7 1.8839 -4.3966 -3.5539 20 14 4.4825 -4.7758 -4.4392 21 1 4.6920 -6.2027 -4.7930 22 1 4.1021 -4.0147 -5.6563 23 1 5.7378 -4.2156 -3.8774 24 8 2.2870 -1.0887 0.0057 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5138 28 1 1.9613 2.1260 -0.0004 29 1 4.5113 1.2704 -0.0011 30 1 3.6611 -3.3123 -0.0027 31 1 6.3733 -3.5885 -0.8354 32 1 6.2611 -3.7349 0.9351 33 1 7.3578 -5.7158 -0.4639 34 1 6.5871 -6.7037 0.8204 35 1 6.9383 -7.7594 -1.6668 36 1 5.4076 -8.0671 -0.7798 37 1 5.9812 -5.9432 -2.9184 38 1 4.5911 -7.0651 -2.8161 39 1 1.6823 -4.2845 -4.4960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027737984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:24 Heat of formation + Delta-G solvation = 1.746893 kcal Electronic energy + Delta-G solvation = -22242.667942 eV Core-core repulsion = 18959.699440 eV Total energy + Delta-G solvation = -3282.968502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37802 -39.09200 -37.83319 -34.10667 -32.95310 -32.67355 -31.76634 -30.01325 -29.58469 -27.05677 -24.92252 -23.82882 -21.85215 -21.32067 -20.87313 -19.83468 -19.49930 -17.89038 -16.76388 -16.17410 -15.75689 -15.42410 -15.18006 -14.96983 -14.31744 -13.72220 -13.41865 -13.10552 -13.06215 -12.91678 -12.83103 -12.69129 -12.57078 -12.54050 -11.76751 -11.71495 -11.33237 -11.19848 -10.96692 -10.75957 -10.53318 -10.07505 -9.99920 -9.77446 -9.75699 -9.47903 -8.74837 -8.52386 -8.11842 -7.08507 -6.02154 -3.36398 1.41676 2.57636 2.96345 3.31909 3.46491 3.50559 3.63028 3.81004 4.50252 4.82450 4.88672 5.14041 5.15291 5.21359 5.23139 5.36955 5.44795 5.52378 5.54587 5.74263 5.79298 5.88787 5.89229 6.03512 6.06346 6.09631 6.20632 6.22973 6.29398 6.36372 6.61550 6.62861 6.75240 6.80460 6.96319 7.20959 7.66083 8.09001 8.23419 8.62541 8.74909 9.61244 10.12338 11.13057 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.006530 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.537641 B = 4287.119033 C = 5152.534157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.018 3.982 3 C -0.230 4.230 4 C -0.132 4.132 5 C -0.064 4.064 6 C 0.596 3.404 7 O -0.544 6.544 8 N -0.688 5.688 9 C 0.113 3.887 10 C 0.144 3.856 11 H 0.050 0.950 12 C -0.123 4.123 13 C -0.131 4.131 14 C 0.112 3.888 15 N -0.601 5.601 16 C -0.244 4.244 17 H 0.088 0.912 18 C 0.032 3.968 19 N -0.902 5.902 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.303 1.303 23 H -0.275 1.275 24 O -0.150 6.150 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.415 0.585 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.058 0.942 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 3.804 8.427 9.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.035 4.035 3 C -0.249 4.249 4 C -0.153 4.153 5 C -0.117 4.117 6 C 0.382 3.618 7 O -0.425 6.425 8 N -0.339 5.339 9 C -0.013 4.013 10 C 0.037 3.963 11 H 0.068 0.932 12 C -0.161 4.161 13 C -0.169 4.169 14 C -0.013 4.013 15 N -0.327 5.327 16 C -0.371 4.371 17 H 0.106 0.894 18 C -0.168 4.168 19 N -0.545 5.545 20 Si 0.714 3.286 21 H -0.212 1.212 22 H -0.231 1.231 23 H -0.201 1.201 24 O -0.045 6.045 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.255 0.745 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.687 3.835 8.265 9.266 hybrid contribution 0.367 0.139 -1.072 1.142 sum 2.054 3.973 7.193 8.470 Atomic orbital electron populations 1.20384 0.84878 1.04007 1.04115 1.22784 0.94338 0.84213 1.02157 1.21481 0.92416 0.99440 1.11607 1.21828 0.98340 0.92975 1.02132 1.22169 0.82112 0.94578 1.12804 1.16579 0.85781 0.82067 0.77382 1.90800 1.22168 1.76597 1.52978 1.46013 1.11956 1.04659 1.71246 1.22026 0.87982 0.90789 1.00526 1.21343 0.92803 0.91259 0.90906 0.93183 1.22517 0.97579 0.96807 0.99225 1.22720 0.99576 0.97398 0.97210 1.21939 0.94562 0.90909 0.93876 1.44873 1.27864 1.45561 1.14417 1.18391 0.94473 1.32324 0.91911 0.89415 1.25079 0.96064 0.98767 0.96923 1.69810 1.17168 1.51357 1.16125 0.86939 0.83325 0.77246 0.81131 1.21187 1.23122 1.20123 1.84103 1.15906 1.34597 1.69887 0.89465 0.90115 0.89398 0.83086 0.82665 0.74539 0.91578 0.92540 0.91321 0.91230 0.91692 0.91212 0.95889 0.92397 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.41 36.01 0.37 -0.47 16 2 C 0.02 0.28 7.31 -35.41 -0.26 0.02 16 3 C -0.23 -3.30 10.77 -39.89 -0.43 -3.73 16 4 C -0.13 -2.21 10.62 -39.39 -0.42 -2.62 16 5 C -0.06 -1.24 7.13 -36.80 -0.26 -1.50 16 6 C 0.60 12.50 7.79 -12.86 -0.10 12.40 16 7 O -0.54 -12.32 16.85 5.20 0.09 -12.24 16 8 N -0.69 -14.01 4.81 -61.63 -0.30 -14.30 16 9 C 0.11 2.13 5.18 -4.04 -0.02 2.11 16 10 C 0.14 2.66 3.34 -66.95 -0.22 2.44 16 11 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.12 -1.84 6.48 -24.89 -0.16 -2.00 16 13 C -0.13 -2.07 7.08 -24.58 -0.17 -2.24 16 14 C 0.11 2.35 4.73 -2.52 -0.01 2.34 16 15 N -0.60 -13.65 2.87 -162.57 -0.47 -14.12 16 16 C -0.24 -6.45 8.87 -15.06 -0.13 -6.58 16 17 H 0.09 2.42 6.55 -52.49 -0.34 2.07 16 18 C 0.03 0.90 5.45 -17.43 -0.09 0.80 16 19 N -0.90 -26.92 13.97 55.49 0.78 -26.14 16 20 Si 0.88 22.81 24.33 -169.99 -4.14 18.67 16 21 H -0.28 -7.05 6.68 56.52 0.38 -6.67 16 22 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 23 H -0.28 -7.21 6.75 56.52 0.38 -6.82 16 24 O -0.15 -2.82 10.40 5.00 0.05 -2.77 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.41 8.68 5.70 -40.82 -0.23 8.44 16 31 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.52 5.45 -51.93 -0.28 0.24 16 38 H 0.06 1.29 7.17 -51.93 -0.37 0.92 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -32.37 319.34 -6.55 -38.93 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.47 Total: 6.21 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.91 Total: 0.96 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.01 Total: -54.57 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.14 Total: -15.00 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.14 Total: 18.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.37 -6.55 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027737984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.673 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds