Wall clock time and date at job start Tue Mar 31 2020 00:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35130 * 125.61454 * 2 1 4 4 C 1.40369 * 107.11418 * 180.02562 * 3 2 1 5 5 C 1.36543 * 106.70528 * 0.02562 * 4 3 2 6 6 C 1.46660 * 125.98280 * 180.02562 * 5 4 3 7 7 O 1.21688 * 120.00142 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99780 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00116 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47295 * 185.94714 * 9 8 6 11 11 H 1.08998 * 109.87487 * 300.87839 * 10 9 8 12 12 C 1.54329 * 109.88306 * 179.86272 * 10 9 8 13 13 C 1.55159 * 102.94053 * 218.39074 * 12 10 9 14 14 C 1.54910 * 101.58536 * 35.50342 * 13 12 10 15 15 N 1.47021 * 109.88088 * 62.05608 * 10 9 8 16 16 C 1.36938 * 125.64871 * 298.33406 * 15 10 9 17 17 H 1.07997 * 120.00224 * 335.97397 * 16 15 10 18 18 C 1.38810 * 119.99997 * 155.96941 * 16 15 10 19 19 N 1.31625 * 119.99920 * 159.46778 * 18 16 15 20 20 Si 1.86796 * 120.00254 * 339.47074 * 18 16 15 21 21 H 1.48501 * 109.47121 * 84.66480 * 20 18 16 22 22 H 1.48501 * 109.47572 * 204.66378 * 20 18 16 23 23 H 1.48496 * 109.47156 * 324.66598 * 20 18 16 24 24 O 1.33931 * 125.61687 * 179.70205 * 2 1 3 25 25 H 1.09007 * 109.47005 * 89.99496 * 1 2 3 26 26 H 1.08997 * 109.46993 * 209.99240 * 1 2 3 27 27 H 1.08997 * 109.47003 * 329.99815 * 1 2 3 28 28 H 1.07999 * 126.44634 * 359.97340 * 3 2 1 29 29 H 1.07996 * 126.64281 * 179.97438 * 4 3 2 30 30 H 0.97005 * 120.00034 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.47494 * 305.94640 * 9 8 6 32 32 H 1.09004 * 109.47334 * 65.95100 * 9 8 6 33 33 H 1.08995 * 110.71621 * 336.75186 * 12 10 9 34 34 H 1.09000 * 110.71886 * 100.03112 * 12 10 9 35 35 H 1.09007 * 111.00445 * 153.57517 * 13 12 10 36 36 H 1.08997 * 111.00749 * 277.42465 * 13 12 10 37 37 H 1.08995 * 110.36818 * 81.82191 * 14 13 12 38 38 H 1.08998 * 110.37211 * 204.04409 * 14 13 12 39 39 H 0.97000 * 120.00026 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7415 -1.6101 -0.0019 7 8 5.8680 -1.1499 -0.0018 8 7 4.5591 -2.9454 -0.0023 9 6 5.7169 -3.8429 -0.0032 10 6 5.2410 -5.2893 -0.1530 11 1 4.5714 -5.5460 0.6679 12 6 6.4542 -6.2432 -0.1585 13 6 6.0553 -7.3065 -1.2157 14 6 5.2845 -6.4456 -2.2474 15 7 4.5480 -5.4570 -1.4387 16 6 3.4070 -4.8036 -1.8216 17 1 2.7317 -4.4134 -1.0746 18 6 3.1186 -4.6428 -3.1698 19 7 1.8839 -4.3966 -3.5539 20 14 4.4825 -4.7758 -4.4392 21 1 4.6920 -6.2027 -4.7930 22 1 4.1021 -4.0147 -5.6563 23 1 5.7378 -4.2156 -3.8774 24 8 2.2870 -1.0887 0.0057 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5138 28 1 1.9613 2.1260 -0.0004 29 1 4.5113 1.2704 -0.0011 30 1 3.6611 -3.3123 -0.0027 31 1 6.3733 -3.5885 -0.8354 32 1 6.2611 -3.7349 0.9351 33 1 7.3578 -5.7158 -0.4639 34 1 6.5871 -6.7037 0.8204 35 1 6.9383 -7.7594 -1.6668 36 1 5.4076 -8.0671 -0.7798 37 1 5.9812 -5.9432 -2.9184 38 1 4.5911 -7.0651 -2.8161 39 1 1.6823 -4.2845 -4.4960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027737984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:22 Heat of formation + Delta-G solvation = -20.828829 kcal Electronic energy + Delta-G solvation = -22243.646898 eV Core-core repulsion = 18959.699440 eV Total energy + Delta-G solvation = -3283.947458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -43.68011 -40.68803 -39.42014 -35.68489 -34.65762 -34.21108 -32.95140 -31.81222 -31.06397 -28.30735 -26.54722 -25.55345 -23.31805 -22.63594 -22.24523 -21.41869 -20.93172 -19.50894 -18.56916 -17.58053 -17.30687 -17.04491 -16.97017 -16.32272 -15.83927 -15.25173 -15.18117 -14.92404 -14.34921 -14.16246 -14.08213 -14.02657 -13.92693 -13.71356 -13.44505 -13.04104 -12.82475 -12.77783 -12.75383 -12.36687 -12.12577 -11.80590 -11.63179 -11.37577 -11.28357 -11.02938 -10.80312 -10.13538 -9.42950 -9.01769 -8.19177 -5.46510 0.02548 1.22996 1.33643 1.35960 1.39983 1.68027 2.10937 2.31026 2.39351 3.08588 3.27144 3.64286 3.83407 3.91367 3.95650 3.99113 4.15130 4.29307 4.42330 4.52969 4.58768 4.62802 4.70982 4.71305 4.73519 4.78086 4.93655 5.01518 5.01853 5.12427 5.13662 5.26120 5.40389 5.47609 5.49790 5.70278 5.92192 6.09508 6.49311 6.75673 7.03270 7.53699 8.12751 8.99879 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.006530 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.537641 B = 4287.119033 C = 5152.534157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 C -0.225 4.225 4 C -0.122 4.122 5 C -0.112 4.112 6 C 0.591 3.409 7 O -0.571 6.571 8 N -0.693 5.693 9 C 0.114 3.886 10 C 0.139 3.861 11 H 0.060 0.940 12 C -0.112 4.112 13 C -0.116 4.116 14 C 0.100 3.900 15 N -0.619 5.619 16 C -0.213 4.213 17 H 0.070 0.930 18 C -0.025 4.025 19 N -0.946 5.946 20 Si 0.931 3.069 21 H -0.270 1.270 22 H -0.316 1.316 23 H -0.284 1.284 24 O -0.177 6.177 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.192 0.808 29 H 0.167 0.833 30 H 0.410 0.590 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.011 0.989 38 H 0.038 0.962 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.937 3.733 9.893 10.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.038 4.038 3 C -0.243 4.243 4 C -0.143 4.143 5 C -0.164 4.164 6 C 0.378 3.622 7 O -0.455 6.455 8 N -0.343 5.343 9 C -0.011 4.011 10 C 0.033 3.967 11 H 0.078 0.922 12 C -0.150 4.150 13 C -0.154 4.154 14 C -0.025 4.025 15 N -0.344 5.344 16 C -0.342 4.342 17 H 0.087 0.913 18 C -0.221 4.221 19 N -0.593 5.593 20 Si 0.762 3.238 21 H -0.196 1.196 22 H -0.245 1.245 23 H -0.210 1.210 24 O -0.074 6.074 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.145 0.855 28 H 0.209 0.791 29 H 0.185 0.815 30 H 0.249 0.751 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.029 0.971 38 H 0.057 0.943 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.461 3.728 9.757 10.731 hybrid contribution 0.078 0.219 -1.410 1.429 sum 2.539 3.947 8.347 9.576 Atomic orbital electron populations 1.20646 0.81830 1.05975 1.04905 1.23808 0.96111 0.83702 1.00214 1.21923 0.90867 1.01096 1.10450 1.22201 1.00086 0.92129 0.99896 1.22034 0.82179 0.95286 1.16880 1.16856 0.86209 0.82336 0.76757 1.90755 1.23231 1.77010 1.54469 1.46100 1.12033 1.04943 1.71187 1.22073 0.87407 0.90796 1.00869 1.21606 0.94393 0.91853 0.88829 0.92212 1.22563 0.95804 0.95575 1.01101 1.22683 1.00116 0.96948 0.95686 1.22062 0.94277 0.91023 0.95118 1.45062 1.27469 1.45840 1.16057 1.18399 0.94964 1.29690 0.91141 0.91254 1.25553 0.97258 1.00633 0.98621 1.69906 1.18545 1.54890 1.15938 0.86152 0.80940 0.77665 0.79053 1.19566 1.24527 1.21018 1.84076 1.16057 1.36495 1.70727 0.89055 0.90087 0.85500 0.79055 0.81537 0.75135 0.94012 0.89812 0.90512 0.87315 0.88675 0.90039 0.97130 0.94334 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.41 71.24 0.74 -0.78 16 2 C 0.01 0.41 7.31 24.97 0.18 0.60 16 3 C -0.22 -5.96 10.77 22.07 0.24 -5.72 16 4 C -0.12 -4.02 10.62 22.39 0.24 -3.78 16 5 C -0.11 -4.43 7.13 24.07 0.17 -4.26 16 6 C 0.59 25.50 7.79 86.44 0.67 26.18 16 7 O -0.57 -26.43 16.85 -4.31 -0.07 -26.51 16 8 N -0.69 -28.85 4.81 -467.11 -2.24 -31.10 16 9 C 0.11 4.23 5.18 86.38 0.45 4.68 16 10 C 0.14 4.90 3.34 45.34 0.15 5.05 16 11 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 12 C -0.11 -2.92 6.48 31.79 0.21 -2.71 16 13 C -0.12 -3.26 7.08 31.99 0.23 -3.03 16 14 C 0.10 4.06 4.73 86.85 0.41 4.47 16 15 N -0.62 -27.84 2.87 -668.25 -1.92 -29.75 16 16 C -0.21 -11.50 8.87 84.03 0.75 -10.76 16 17 H 0.07 3.97 6.55 -2.91 -0.02 3.95 16 18 C -0.03 -1.47 5.45 84.86 0.46 -1.01 16 19 N -0.95 -58.52 13.97 21.65 0.30 -58.22 16 20 Si 0.93 48.40 24.33 68.60 1.67 50.07 16 21 H -0.27 -13.12 6.68 99.48 0.66 -12.46 16 22 H -0.32 -16.93 7.11 99.48 0.71 -16.22 16 23 H -0.28 -14.91 6.75 99.48 0.67 -14.23 16 24 O -0.18 -6.81 10.40 -5.02 -0.05 -6.87 16 25 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.19 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.17 4.93 8.06 -2.91 -0.02 4.91 16 30 H 0.41 17.78 5.70 -92.70 -0.53 17.25 16 31 H 0.04 1.76 8.12 -2.39 -0.02 1.74 16 32 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.08 1.92 7.85 -2.39 -0.02 1.90 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.01 0.48 5.45 -2.39 -0.01 0.46 16 38 H 0.04 1.70 7.17 -2.39 -0.02 1.68 16 39 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -73.68 319.34 3.04 -70.65 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.45 Total: 22.79 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 4.89 Total: 8.93 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -3.86 Total: -119.07 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.12 Total: -33.37 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 1.67 Total: 50.07 kcal Total: -73.68 3.04 -70.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027737984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.820 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds