Wall clock time and date at job start Tue Mar 31 2020 00:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33651 * 125.80244 * 2 1 4 4 C 1.34214 * 110.90635 * 180.24175 * 3 2 1 5 5 C 1.34183 * 109.12288 * 359.76631 * 4 3 2 6 6 C 1.36413 * 125.79891 * 179.83345 * 2 1 3 7 7 C 1.47380 * 127.19235 * 0.03803 * 6 2 1 8 8 O 1.21612 * 119.99972 * 359.70871 * 7 6 2 9 9 N 1.34775 * 120.00272 * 179.43150 * 7 6 2 10 10 C 1.46501 * 120.00210 * 180.27399 * 9 7 6 11 11 C 1.52999 * 109.46978 * 185.13541 * 10 9 7 12 12 H 1.09001 * 109.87539 * 303.57318 * 11 10 9 13 13 C 1.54324 * 109.88259 * 64.58953 * 11 10 9 14 14 C 1.55162 * 102.94276 * 141.60969 * 13 11 10 15 15 C 1.54917 * 101.57971 * 324.50061 * 14 13 11 16 16 N 1.47023 * 109.88326 * 182.40000 * 11 10 9 17 17 C 1.36933 * 125.64640 * 61.61703 * 16 11 10 18 18 H 1.08000 * 120.00435 * 14.76592 * 17 16 11 19 19 C 1.38813 * 119.99822 * 194.75974 * 17 16 11 20 20 N 1.31610 * 120.00231 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99864 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47130 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46928 * 119.99897 * 21 19 17 24 24 H 1.48500 * 109.47281 * 240.00169 * 21 19 17 25 25 H 1.09000 * 109.47367 * 270.16962 * 1 2 3 26 26 H 1.09009 * 109.46758 * 30.16658 * 1 2 3 27 27 H 1.08996 * 109.47177 * 150.16241 * 1 2 3 28 28 H 1.08002 * 125.43973 * 179.72688 * 4 3 2 29 29 H 1.08000 * 127.01688 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99415 * 0.27893 * 9 7 6 31 31 H 1.09000 * 109.46850 * 305.13400 * 10 9 7 32 32 H 1.09000 * 109.46716 * 65.13910 * 10 9 7 33 33 H 1.08995 * 110.72676 * 259.97014 * 13 11 10 34 34 H 1.09004 * 110.71849 * 23.24853 * 13 11 10 35 35 H 1.09003 * 111.00525 * 82.57025 * 14 13 11 36 36 H 1.08999 * 111.00874 * 206.42599 * 14 13 11 37 37 H 1.09000 * 110.36473 * 155.85014 * 15 14 13 38 38 H 1.09005 * 110.36565 * 278.06201 * 15 14 13 39 39 H 0.97006 * 120.00093 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7389 -0.0053 5 6 3.6848 -0.5992 -0.0038 6 6 2.3050 -1.1064 0.0032 7 6 1.8739 -2.5157 0.0065 8 8 0.6889 -2.7891 0.0119 9 7 2.7928 -3.5016 -0.0021 10 6 2.3642 -4.9025 -0.0048 11 6 3.5895 -5.8109 0.1143 12 1 4.2912 -5.5943 -0.6912 13 6 4.2743 -5.5921 1.4798 14 6 4.7121 -7.0251 1.8827 15 6 3.5451 -7.8759 1.3222 16 7 3.1749 -7.2202 0.0547 17 6 2.5481 -7.8237 -1.0027 18 1 2.5298 -7.3391 -1.9677 19 6 1.9363 -9.0583 -0.8342 20 7 1.9583 -9.6486 0.3418 21 14 1.0819 -9.8818 -2.2769 22 1 1.1988 -9.0188 -3.4798 23 1 1.7207 -11.1951 -2.5465 24 1 -0.3525 -10.0866 -1.9515 25 1 -0.3634 0.0030 1.0276 26 1 -0.3633 0.8886 -0.5165 27 1 -0.3633 -0.8914 -0.5113 28 1 4.4173 1.4283 -0.0106 29 1 4.5927 -1.1841 -0.0073 30 1 3.7379 -3.2835 -0.0064 31 1 1.6969 -5.0800 0.8386 32 1 1.8397 -5.1201 -0.9352 33 1 5.1408 -4.9390 1.3766 34 1 3.5684 -5.1864 2.2046 35 1 5.6552 -7.2939 1.4068 36 1 4.7813 -7.1225 2.9661 37 1 3.8752 -8.8983 1.1382 38 1 2.7035 -7.8687 2.0149 39 1 1.5304 -10.5112 0.4596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027745204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:28 Heat of formation + Delta-G solvation = -4.250241 kcal Electronic energy + Delta-G solvation = -21514.816156 eV Core-core repulsion = 18231.587599 eV Total energy + Delta-G solvation = -3283.228557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.53 seconds Orbital eigenvalues (eV) -42.66010 -39.19119 -37.56602 -34.26485 -33.07429 -32.47221 -31.92388 -29.68552 -28.75265 -26.95057 -24.97808 -24.13380 -22.72165 -20.99770 -20.28531 -19.90635 -19.26598 -17.92642 -16.70772 -16.44202 -15.78137 -15.68912 -14.96494 -14.67435 -14.49465 -13.99254 -13.80335 -13.31378 -13.14312 -13.06262 -12.94079 -12.85790 -12.08049 -11.89404 -11.83008 -11.72577 -11.30392 -10.93478 -10.80155 -10.23606 -10.08688 -9.94911 -9.90994 -9.84420 -9.73943 -9.62249 -8.78276 -8.60960 -8.49348 -6.83853 -5.76882 -3.13496 1.34646 1.94775 2.69087 3.39465 3.46150 3.48168 3.55242 3.56561 4.39756 4.49085 4.76358 4.84056 5.17057 5.33949 5.38861 5.41097 5.43091 5.49126 5.59126 5.63457 5.74423 5.81487 6.06282 6.07354 6.12525 6.18448 6.25166 6.46276 6.55513 6.63628 6.72898 6.83310 6.90631 7.07514 7.51522 7.61483 7.79342 7.85300 8.25450 8.53306 9.17521 9.78051 10.45468 11.35271 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023043 B = 0.004115 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.803457 B = 6802.621696 C = 7592.889697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.072 3.928 3 O -0.179 6.179 4 C -0.044 4.044 5 C -0.187 4.187 6 C -0.240 4.240 7 C 0.581 3.419 8 O -0.545 6.545 9 N -0.714 5.714 10 C 0.110 3.890 11 C 0.152 3.848 12 H 0.037 0.963 13 C -0.126 4.126 14 C -0.149 4.149 15 C 0.172 3.828 16 N -0.589 5.589 17 C -0.234 4.234 18 H 0.076 0.924 19 C -0.001 4.001 20 N -0.915 5.915 21 Si 0.910 3.090 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.289 1.289 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.206 0.794 29 H 0.157 0.843 30 H 0.395 0.605 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.026 0.974 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 18.846 1.523 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.019 3.981 3 O -0.076 6.076 4 C -0.110 4.110 5 C -0.206 4.206 6 C -0.245 4.245 7 C 0.368 3.632 8 O -0.424 6.424 9 N -0.365 5.365 10 C -0.015 4.015 11 C 0.043 3.957 12 H 0.055 0.945 13 C -0.164 4.164 14 C -0.187 4.187 15 C 0.048 3.952 16 N -0.313 5.313 17 C -0.362 4.362 18 H 0.094 0.906 19 C -0.198 4.198 20 N -0.561 5.561 21 Si 0.740 3.260 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.129 0.871 28 H 0.223 0.777 29 H 0.174 0.826 30 H 0.228 0.772 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.033 18.657 1.481 19.146 hybrid contribution 0.259 -0.479 -0.684 0.874 sum 4.293 18.178 0.797 18.695 Atomic orbital electron populations 1.20609 0.83766 1.05031 1.04369 1.22829 0.94126 0.83086 0.98074 1.83750 1.17139 1.35095 1.71579 1.23811 0.83565 0.96368 1.07217 1.22899 0.96804 0.94535 1.06403 1.21319 0.93193 0.94293 1.15650 1.17217 0.85742 0.83601 0.76589 1.90757 1.16628 1.84035 1.51020 1.45929 1.09192 1.07041 1.74306 1.22249 0.99459 0.77204 1.02572 1.21126 0.92812 0.86593 0.95133 0.94546 1.22604 0.99120 0.97488 0.97189 1.23009 1.00335 0.95953 0.99431 1.21451 0.91776 0.95770 0.86247 1.44487 1.69052 1.02192 1.15569 1.19036 1.27304 1.01427 0.88455 0.90591 1.24913 0.99581 0.98456 0.96856 1.69946 1.47812 1.16893 1.21461 0.86078 0.79306 0.79125 0.81458 1.20363 1.21711 1.21574 0.89414 0.90613 0.87143 0.77708 0.82574 0.77166 0.91488 0.91468 0.92460 0.91809 0.92314 0.92344 0.90993 0.95574 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.89 36.01 0.36 -0.52 16 2 C 0.07 0.90 7.37 -34.96 -0.26 0.64 16 3 O -0.18 -2.00 10.52 7.66 0.08 -1.92 16 4 C -0.04 -0.39 12.03 29.30 0.35 -0.04 16 5 C -0.19 -1.95 10.60 -37.46 -0.40 -2.34 16 6 C -0.24 -3.30 6.31 -103.28 -0.65 -3.95 16 7 C 0.58 9.79 7.81 -12.54 -0.10 9.69 16 8 O -0.54 -10.94 14.84 5.27 0.08 -10.86 16 9 N -0.71 -11.34 5.32 -61.40 -0.33 -11.67 16 10 C 0.11 2.17 5.07 -4.04 -0.02 2.15 16 11 C 0.15 3.02 3.22 -66.95 -0.22 2.80 16 12 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 13 C -0.13 -2.11 6.10 -24.89 -0.15 -2.27 16 14 C -0.15 -2.73 7.09 -24.58 -0.17 -2.90 16 15 C 0.17 4.12 5.41 -2.53 -0.01 4.10 16 16 N -0.59 -14.66 3.13 -162.57 -0.51 -15.17 16 17 C -0.23 -6.43 9.76 -15.06 -0.15 -6.57 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 20 N -0.92 -26.67 10.58 55.49 0.59 -26.09 16 21 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.11 1.40 6.49 -51.93 -0.34 1.06 16 28 H 0.21 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.16 1.24 7.74 -52.49 -0.41 0.84 16 30 H 0.39 5.08 7.51 -40.82 -0.31 4.77 16 31 H 0.07 1.47 8.08 -51.93 -0.42 1.05 16 32 H 0.07 1.49 7.92 -51.93 -0.41 1.08 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.08 7.81 -51.93 -0.41 0.67 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 38 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 324.98 15.07 4.90 4.90 Total: -1.00 -32.60 324.98 -7.30 -39.90 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.57 Total: 3.11 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.51 Total: 0.68 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.25 Total: -52.92 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.16 Total: -12.78 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.60 -7.30 -39.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027745204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.646 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.53 seconds