Wall clock time and date at job start Tue Mar 31 2020 00:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33651 * 125.80244 * 2 1 4 4 C 1.34214 * 110.90635 * 180.24175 * 3 2 1 5 5 C 1.34183 * 109.12288 * 359.76631 * 4 3 2 6 6 C 1.36413 * 125.79891 * 179.83345 * 2 1 3 7 7 C 1.47380 * 127.19235 * 0.03803 * 6 2 1 8 8 O 1.21612 * 119.99972 * 359.70871 * 7 6 2 9 9 N 1.34775 * 120.00272 * 179.43150 * 7 6 2 10 10 C 1.46501 * 120.00210 * 180.27399 * 9 7 6 11 11 C 1.52999 * 109.46978 * 185.13541 * 10 9 7 12 12 H 1.09001 * 109.87539 * 303.57318 * 11 10 9 13 13 C 1.54324 * 109.88259 * 64.58953 * 11 10 9 14 14 C 1.55162 * 102.94276 * 141.60969 * 13 11 10 15 15 C 1.54917 * 101.57971 * 324.50061 * 14 13 11 16 16 N 1.47023 * 109.88326 * 182.40000 * 11 10 9 17 17 C 1.36933 * 125.64640 * 61.61703 * 16 11 10 18 18 H 1.08000 * 120.00435 * 14.76592 * 17 16 11 19 19 C 1.38813 * 119.99822 * 194.75974 * 17 16 11 20 20 N 1.31610 * 120.00231 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99864 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47130 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46928 * 119.99897 * 21 19 17 24 24 H 1.48500 * 109.47281 * 240.00169 * 21 19 17 25 25 H 1.09000 * 109.47367 * 270.16962 * 1 2 3 26 26 H 1.09009 * 109.46758 * 30.16658 * 1 2 3 27 27 H 1.08996 * 109.47177 * 150.16241 * 1 2 3 28 28 H 1.08002 * 125.43973 * 179.72688 * 4 3 2 29 29 H 1.08000 * 127.01688 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99415 * 0.27893 * 9 7 6 31 31 H 1.09000 * 109.46850 * 305.13400 * 10 9 7 32 32 H 1.09000 * 109.46716 * 65.13910 * 10 9 7 33 33 H 1.08995 * 110.72676 * 259.97014 * 13 11 10 34 34 H 1.09004 * 110.71849 * 23.24853 * 13 11 10 35 35 H 1.09003 * 111.00525 * 82.57025 * 14 13 11 36 36 H 1.08999 * 111.00874 * 206.42599 * 14 13 11 37 37 H 1.09000 * 110.36473 * 155.85014 * 15 14 13 38 38 H 1.09005 * 110.36565 * 278.06201 * 15 14 13 39 39 H 0.97006 * 120.00093 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7389 -0.0053 5 6 3.6848 -0.5992 -0.0038 6 6 2.3050 -1.1064 0.0032 7 6 1.8739 -2.5157 0.0065 8 8 0.6889 -2.7891 0.0119 9 7 2.7928 -3.5016 -0.0021 10 6 2.3642 -4.9025 -0.0048 11 6 3.5895 -5.8109 0.1143 12 1 4.2912 -5.5943 -0.6912 13 6 4.2743 -5.5921 1.4798 14 6 4.7121 -7.0251 1.8827 15 6 3.5451 -7.8759 1.3222 16 7 3.1749 -7.2202 0.0547 17 6 2.5481 -7.8237 -1.0027 18 1 2.5298 -7.3391 -1.9677 19 6 1.9363 -9.0583 -0.8342 20 7 1.9583 -9.6486 0.3418 21 14 1.0819 -9.8818 -2.2769 22 1 1.1988 -9.0188 -3.4798 23 1 1.7207 -11.1951 -2.5465 24 1 -0.3525 -10.0866 -1.9515 25 1 -0.3634 0.0030 1.0276 26 1 -0.3633 0.8886 -0.5165 27 1 -0.3633 -0.8914 -0.5113 28 1 4.4173 1.4283 -0.0106 29 1 4.5927 -1.1841 -0.0073 30 1 3.7379 -3.2835 -0.0064 31 1 1.6969 -5.0800 0.8386 32 1 1.8397 -5.1201 -0.9352 33 1 5.1408 -4.9390 1.3766 34 1 3.5684 -5.1864 2.2046 35 1 5.6552 -7.2939 1.4068 36 1 4.7813 -7.1225 2.9661 37 1 3.8752 -8.8983 1.1382 38 1 2.7035 -7.8687 2.0149 39 1 1.5304 -10.5112 0.4596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027745204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:26 Heat of formation + Delta-G solvation = -26.355757 kcal Electronic energy + Delta-G solvation = -21515.774723 eV Core-core repulsion = 18231.587599 eV Total energy + Delta-G solvation = -3284.187124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.50910 -40.60144 -39.21814 -35.80016 -34.44599 -33.97522 -32.77013 -31.44534 -30.42181 -27.91959 -26.73435 -25.79210 -23.87716 -22.08891 -21.88112 -21.34200 -20.64535 -19.07184 -18.48669 -17.35390 -17.29250 -16.82440 -16.64155 -16.18741 -15.89102 -15.65652 -15.15989 -14.61522 -14.39640 -14.10269 -13.93727 -13.82717 -13.72684 -13.66161 -13.39904 -12.99928 -12.86283 -12.69519 -12.66307 -11.98750 -11.88453 -11.73760 -11.50044 -11.41229 -11.07400 -10.82495 -10.69778 -10.09529 -9.49851 -8.87181 -7.89700 -5.27413 0.33968 1.16843 1.43364 1.45508 1.54879 1.84672 2.25432 2.33525 2.50084 3.30419 3.63334 3.69560 3.84114 3.91469 3.97310 3.99484 4.25310 4.37518 4.44531 4.52974 4.60502 4.66841 4.71877 4.76572 4.89451 4.96788 4.99499 5.13452 5.18795 5.23113 5.36077 5.43285 5.46085 5.56814 5.65551 5.77237 6.06106 6.21983 6.59896 7.08133 7.24675 7.74992 8.40973 9.21530 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023043 B = 0.004115 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.803457 B = 6802.621696 C = 7592.889697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.066 3.934 3 O -0.180 6.180 4 C -0.028 4.028 5 C -0.197 4.197 6 C -0.269 4.269 7 C 0.577 3.423 8 O -0.588 6.588 9 N -0.700 5.700 10 C 0.131 3.869 11 C 0.148 3.852 12 H 0.052 0.948 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.173 3.827 16 N -0.611 5.611 17 C -0.241 4.241 18 H 0.076 0.924 19 C -0.058 4.058 20 N -0.945 5.945 21 Si 0.971 3.029 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.295 1.295 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.253 0.747 29 H 0.182 0.818 30 H 0.414 0.586 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.036 0.964 38 H -0.009 1.009 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 21.703 1.342 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.013 3.987 3 O -0.076 6.076 4 C -0.092 4.092 5 C -0.216 4.216 6 C -0.274 4.274 7 C 0.367 3.633 8 O -0.470 6.470 9 N -0.351 5.351 10 C 0.005 3.995 11 C 0.041 3.959 12 H 0.070 0.930 13 C -0.150 4.150 14 C -0.171 4.171 15 C 0.048 3.952 16 N -0.335 5.335 17 C -0.370 4.370 18 H 0.094 0.906 19 C -0.252 4.252 20 N -0.593 5.593 21 Si 0.800 3.200 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.222 1.222 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.269 0.731 29 H 0.199 0.801 30 H 0.251 0.749 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.009 0.991 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.471 21.568 1.292 22.555 hybrid contribution -0.463 -1.257 -0.634 1.482 sum 6.009 20.311 0.658 21.191 Atomic orbital electron populations 1.20595 0.83320 1.05037 1.04840 1.23036 0.94814 0.83331 0.97536 1.83786 1.18178 1.34397 1.71274 1.24737 0.83394 0.96773 1.04323 1.23187 0.95895 0.95393 1.07085 1.21205 0.95693 0.92426 1.18042 1.17731 0.85139 0.85033 0.75413 1.90736 1.18511 1.84916 1.52868 1.45612 1.10197 1.05190 1.74131 1.21696 0.98717 0.79603 0.99506 1.21332 0.92798 0.83903 0.97852 0.92988 1.22593 1.00413 0.97318 0.94693 1.22875 0.98111 0.95363 1.00769 1.21270 0.92801 0.95405 0.85695 1.44755 1.68902 1.04736 1.15127 1.19343 1.26728 1.01493 0.89430 0.90573 1.25678 1.00870 0.99407 0.99249 1.70144 1.48950 1.16985 1.23236 0.85120 0.77636 0.78206 0.79057 1.19169 1.21423 1.22192 0.88714 0.88012 0.89637 0.73109 0.80071 0.74936 0.94538 0.94794 0.87618 0.91912 0.90943 0.89913 0.94515 0.99110 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 9.89 71.24 0.70 -1.01 16 2 C 0.07 1.57 7.37 25.26 0.19 1.75 16 3 O -0.18 -3.46 10.52 4.49 0.05 -3.41 16 4 C -0.03 -0.37 12.03 66.89 0.80 0.43 16 5 C -0.20 -3.38 10.60 23.65 0.25 -3.13 16 6 C -0.27 -7.02 6.31 -19.00 -0.12 -7.14 16 7 C 0.58 19.46 7.81 86.65 0.68 20.14 16 8 O -0.59 -24.58 14.84 -4.07 -0.06 -24.64 16 9 N -0.70 -21.60 5.32 -466.41 -2.48 -24.09 16 10 C 0.13 5.26 5.07 86.38 0.44 5.69 16 11 C 0.15 5.76 3.22 45.34 0.15 5.90 16 12 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 13 C -0.11 -3.44 6.10 31.78 0.19 -3.24 16 14 C -0.13 -4.59 7.09 31.99 0.23 -4.36 16 15 C 0.17 8.49 5.41 86.86 0.47 8.96 16 16 N -0.61 -30.98 3.13 -668.24 -2.09 -33.07 16 17 C -0.24 -13.57 9.76 84.03 0.82 -12.75 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 19 C -0.06 -3.36 5.47 84.86 0.46 -2.89 16 20 N -0.95 -57.48 10.58 21.65 0.23 -57.25 16 21 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 25 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.09 2.26 6.49 -2.39 -0.02 2.24 16 28 H 0.25 0.78 8.06 -2.91 -0.02 0.75 16 29 H 0.18 2.04 7.74 -2.91 -0.02 2.02 16 30 H 0.41 9.50 7.51 -92.71 -0.70 8.81 16 31 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 32 H 0.03 1.57 7.92 -2.39 -0.02 1.55 16 33 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 1.96 7.81 -2.38 -0.02 1.94 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.04 2.02 6.94 -2.39 -0.02 2.01 16 38 H -0.01 -0.50 8.06 -2.38 -0.02 -0.52 16 39 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -75.94 324.98 3.29 -72.65 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.36 Total: 12.67 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.26 Total: 8.36 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -4.34 Total: -114.40 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.01 Total: -28.06 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -75.94 3.29 -72.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027745204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.291 kcal (2) G-P(sol) polarization free energy of solvation -75.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds