Wall clock time and date at job start Tue Mar 31 2020 00:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33655 * 125.80185 * 2 1 4 4 C 1.34212 * 110.90839 * 180.26540 * 3 2 1 5 5 C 1.34175 * 109.12673 * 359.76278 * 4 3 2 6 6 C 1.36418 * 125.80340 * 179.85946 * 2 1 3 7 7 C 1.47373 * 127.18942 * 0.02562 * 6 2 1 8 8 O 1.21612 * 120.00216 * 359.71010 * 7 6 2 9 9 N 1.34780 * 119.99936 * 179.70759 * 7 6 2 10 10 C 1.46502 * 119.99919 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47048 * 185.94435 * 10 9 7 12 12 H 1.08995 * 109.99896 * 295.77391 * 11 10 9 13 13 C 1.54325 * 109.88317 * 174.67651 * 11 10 9 14 14 C 1.55272 * 103.00553 * 218.47148 * 13 11 10 15 15 C 1.54907 * 101.53140 * 35.36121 * 14 13 11 16 16 N 1.47029 * 109.87940 * 56.86812 * 11 10 9 17 17 C 1.36937 * 125.64981 * 298.33628 * 16 11 10 18 18 H 1.07999 * 119.99633 * 331.55056 * 17 16 11 19 19 C 1.38806 * 119.99922 * 151.55302 * 17 16 11 20 20 N 1.31617 * 119.99920 * 163.20989 * 19 17 16 21 21 Si 1.86796 * 120.00057 * 343.20941 * 19 17 16 22 22 H 1.48506 * 109.47334 * 85.10923 * 21 19 17 23 23 H 1.48507 * 109.47482 * 205.10988 * 21 19 17 24 24 H 1.48497 * 109.47523 * 325.11188 * 21 19 17 25 25 H 1.08994 * 109.47083 * 270.14041 * 1 2 3 26 26 H 1.08999 * 109.46791 * 30.14072 * 1 2 3 27 27 H 1.08999 * 109.46947 * 150.13835 * 1 2 3 28 28 H 1.07999 * 125.44037 * 179.76404 * 4 3 2 29 29 H 1.08003 * 127.02794 * 179.97438 * 5 4 3 30 30 H 0.96995 * 119.99792 * 0.02562 * 9 7 6 31 31 H 1.09001 * 109.46953 * 65.94547 * 10 9 7 32 32 H 1.09001 * 109.47025 * 305.94604 * 10 9 7 33 33 H 1.09000 * 110.72028 * 336.75707 * 13 11 10 34 34 H 1.08997 * 110.71960 * 100.02646 * 13 11 10 35 35 H 1.09004 * 110.95791 * 277.33159 * 14 13 11 36 36 H 1.09000 * 111.10201 * 153.45154 * 14 13 11 37 37 H 1.08997 * 110.36606 * 204.23127 * 15 14 13 38 38 H 1.09002 * 110.36594 * 82.02164 * 15 14 13 39 39 H 0.96998 * 120.00055 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 -0.0058 5 6 3.6849 -0.5990 -0.0046 6 6 2.3050 -1.1064 0.0027 7 6 1.8740 -2.5157 0.0056 8 8 0.6890 -2.7891 0.0111 9 7 2.7931 -3.5015 0.0022 10 6 2.3645 -4.9024 0.0057 11 6 3.5881 -5.8097 0.1500 12 1 4.2372 -5.7012 -0.7188 13 6 3.1383 -7.2794 0.2890 14 6 4.1321 -7.8514 1.3359 15 6 4.3345 -6.6319 2.2694 16 7 4.3270 -5.4618 1.3727 17 6 4.9116 -4.2516 1.6348 18 1 5.2636 -3.6345 0.8213 19 6 5.0519 -3.8180 2.9459 20 7 5.8874 -2.8416 3.2303 21 14 4.0550 -4.6204 4.3067 22 1 4.7601 -5.8363 4.7859 23 1 3.8949 -3.6650 5.4324 24 1 2.7173 -4.9977 3.7838 25 1 -0.3633 0.0025 1.0276 26 1 -0.3633 0.8887 -0.5160 27 1 -0.3633 -0.8912 -0.5117 28 1 4.4172 1.4284 -0.0107 29 1 4.5928 -1.1840 -0.0086 30 1 3.7382 -3.2834 -0.0019 31 1 1.8532 -5.1283 -0.9301 32 1 1.6854 -5.0726 0.8411 33 1 2.1150 -7.3361 0.6600 34 1 3.2345 -7.8036 -0.6618 35 1 5.0707 -8.1425 0.8642 36 1 3.6926 -8.6892 1.8773 37 1 5.2901 -6.7059 2.7884 38 1 3.5177 -6.5645 2.9880 39 1 5.9852 -2.5384 4.1465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027745205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:32 Heat of formation + Delta-G solvation = 0.195146 kcal Electronic energy + Delta-G solvation = -22423.679310 eV Core-core repulsion = 19140.643520 eV Total energy + Delta-G solvation = -3283.035790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.18622 -38.97936 -37.75785 -33.87674 -32.75227 -32.58054 -31.54351 -30.02778 -29.36840 -26.68005 -25.04280 -23.96738 -22.40025 -21.10058 -20.40370 -19.72228 -18.97592 -17.58249 -16.79587 -16.01709 -15.73464 -15.36856 -15.21520 -14.95107 -14.21248 -13.97762 -13.42081 -13.04982 -12.97991 -12.86066 -12.80741 -12.57620 -12.54466 -12.36515 -11.68916 -11.45699 -11.29573 -11.16910 -10.95973 -10.66570 -10.53578 -10.10740 -9.99113 -9.53870 -9.40033 -9.32561 -8.75828 -8.36182 -8.09352 -7.03752 -6.06600 -3.44483 1.75526 2.48855 3.13022 3.30393 3.44667 3.49236 3.87916 4.05055 4.47419 4.85264 4.91114 5.14656 5.23102 5.26563 5.33005 5.40165 5.51407 5.56361 5.69794 5.81737 5.91614 5.93046 5.98335 6.09136 6.12006 6.21001 6.24398 6.33457 6.38680 6.43249 6.62474 6.70541 6.75374 6.84289 7.21546 7.35980 7.68761 8.17019 8.34939 8.68433 8.93942 9.57407 10.11941 11.08433 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017752 B = 0.006731 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.951555 B = 4158.825298 C = 4973.528896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.058 3.942 3 O -0.182 6.182 4 C -0.052 4.052 5 C -0.167 4.167 6 C -0.232 4.232 7 C 0.583 3.417 8 O -0.569 6.569 9 N -0.692 5.692 10 C 0.116 3.884 11 C 0.144 3.856 12 H 0.049 0.951 13 C -0.123 4.123 14 C -0.131 4.131 15 C 0.111 3.889 16 N -0.602 5.602 17 C -0.246 4.246 18 H 0.086 0.914 19 C 0.036 3.964 20 N -0.903 5.903 21 Si 0.888 3.112 22 H -0.286 1.286 23 H -0.304 1.304 24 H -0.274 1.274 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.205 0.795 29 H 0.162 0.838 30 H 0.414 0.586 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.024 0.976 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.286 0.446 -7.398 9.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.005 3.995 3 O -0.079 6.079 4 C -0.118 4.118 5 C -0.186 4.186 6 C -0.236 4.236 7 C 0.371 3.629 8 O -0.452 6.452 9 N -0.344 5.344 10 C -0.010 4.010 11 C 0.036 3.964 12 H 0.067 0.933 13 C -0.162 4.162 14 C -0.169 4.169 15 C -0.014 4.014 16 N -0.328 5.328 17 C -0.373 4.373 18 H 0.103 0.897 19 C -0.165 4.165 20 N -0.545 5.545 21 Si 0.719 3.281 22 H -0.213 1.213 23 H -0.232 1.232 24 H -0.199 1.199 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.125 0.875 28 H 0.222 0.778 29 H 0.179 0.821 30 H 0.255 0.745 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.035 0.720 -7.249 9.460 hybrid contribution 0.269 -0.355 1.142 1.225 sum -5.767 0.365 -6.107 8.407 Atomic orbital electron populations 1.20510 0.84201 1.04460 1.04025 1.22681 0.93893 0.83335 0.99550 1.83699 1.17266 1.34966 1.71964 1.23762 0.83205 0.96516 1.08270 1.23030 0.97086 0.94449 1.04047 1.21258 0.93392 0.94108 1.14857 1.17211 0.85455 0.83977 0.76226 1.90659 1.16961 1.84398 1.53171 1.45978 1.10914 1.05378 1.72168 1.21888 0.97904 0.81107 1.00117 1.21352 0.91123 0.92095 0.91786 0.93327 1.22545 0.99298 0.95151 0.99181 1.22731 0.99110 0.97505 0.97563 1.21961 0.99282 0.86759 0.93388 1.44805 1.61282 1.09937 1.16759 1.18297 1.32235 0.93802 0.92988 0.89712 1.25164 0.97821 0.96069 0.97435 1.69755 1.35401 1.29673 1.19654 0.86849 0.81824 0.77698 0.81722 1.21258 1.23165 1.19920 0.89825 0.90990 0.87503 0.77798 0.82083 0.74536 0.93013 0.92100 0.91397 0.91316 0.91279 0.91739 0.92554 0.95859 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.89 36.00 0.36 -0.69 16 2 C 0.06 0.99 7.37 -34.97 -0.26 0.73 16 3 O -0.18 -2.89 10.52 7.66 0.08 -2.81 16 4 C -0.05 -0.78 12.03 29.30 0.35 -0.43 16 5 C -0.17 -2.93 10.60 -37.45 -0.40 -3.32 16 6 C -0.23 -4.43 6.31 -103.28 -0.65 -5.08 16 7 C 0.58 12.23 7.81 -12.54 -0.10 12.13 16 8 O -0.57 -12.66 14.83 5.27 0.08 -12.58 16 9 N -0.69 -14.13 4.82 -61.39 -0.30 -14.43 16 10 C 0.12 2.22 5.26 -4.04 -0.02 2.20 16 11 C 0.14 2.65 3.41 -66.95 -0.23 2.42 16 12 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 13 C -0.12 -1.86 6.48 -24.83 -0.16 -2.03 16 14 C -0.13 -2.07 7.10 -24.52 -0.17 -2.24 16 15 C 0.11 2.31 4.79 -2.53 -0.01 2.30 16 16 N -0.60 -13.46 2.82 -162.57 -0.46 -13.92 16 17 C -0.25 -6.30 8.44 -15.06 -0.13 -6.43 16 18 H 0.09 2.23 6.74 -52.49 -0.35 1.88 16 19 C 0.04 0.99 5.46 -17.43 -0.10 0.89 16 20 N -0.90 -26.11 13.97 55.49 0.78 -25.34 16 21 Si 0.89 22.68 24.37 -169.99 -4.14 18.54 16 22 H -0.29 -7.04 6.86 56.52 0.39 -6.65 16 23 H -0.30 -7.98 7.11 56.52 0.40 -7.57 16 24 H -0.27 -7.10 6.64 56.52 0.38 -6.73 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.11 1.59 6.49 -51.93 -0.34 1.25 16 28 H 0.21 2.20 8.06 -52.49 -0.42 1.78 16 29 H 0.16 2.84 7.74 -52.48 -0.41 2.44 16 30 H 0.41 8.59 4.72 -40.82 -0.19 8.39 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.29 8.05 -51.93 -0.42 0.87 16 33 H 0.07 1.00 7.80 -51.93 -0.40 0.59 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.24 7.43 -51.93 -0.39 0.85 16 38 H 0.02 0.52 5.24 -51.93 -0.27 0.25 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 314.46 15.07 4.74 4.74 Total: -1.00 -31.38 314.46 -6.07 -37.45 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.33 Total: 7.91 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.52 Total: 0.44 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.02 Total: -53.69 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.16 Total: -15.39 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.14 Total: 18.54 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.38 -6.07 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027745205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.641 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds