Wall clock time and date at job start Tue Mar 31 2020 00:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33655 * 125.80185 * 2 1 4 4 C 1.34212 * 110.90839 * 180.26540 * 3 2 1 5 5 C 1.34175 * 109.12673 * 359.76278 * 4 3 2 6 6 C 1.36418 * 125.80340 * 179.85946 * 2 1 3 7 7 C 1.47373 * 127.18942 * 0.02562 * 6 2 1 8 8 O 1.21612 * 120.00216 * 359.71010 * 7 6 2 9 9 N 1.34780 * 119.99936 * 179.70759 * 7 6 2 10 10 C 1.46502 * 119.99919 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47048 * 185.94435 * 10 9 7 12 12 H 1.08995 * 109.99896 * 295.77391 * 11 10 9 13 13 C 1.54325 * 109.88317 * 174.67651 * 11 10 9 14 14 C 1.55272 * 103.00553 * 218.47148 * 13 11 10 15 15 C 1.54907 * 101.53140 * 35.36121 * 14 13 11 16 16 N 1.47029 * 109.87940 * 56.86812 * 11 10 9 17 17 C 1.36937 * 125.64981 * 298.33628 * 16 11 10 18 18 H 1.07999 * 119.99633 * 331.55056 * 17 16 11 19 19 C 1.38806 * 119.99922 * 151.55302 * 17 16 11 20 20 N 1.31617 * 119.99920 * 163.20989 * 19 17 16 21 21 Si 1.86796 * 120.00057 * 343.20941 * 19 17 16 22 22 H 1.48506 * 109.47334 * 85.10923 * 21 19 17 23 23 H 1.48507 * 109.47482 * 205.10988 * 21 19 17 24 24 H 1.48497 * 109.47523 * 325.11188 * 21 19 17 25 25 H 1.08994 * 109.47083 * 270.14041 * 1 2 3 26 26 H 1.08999 * 109.46791 * 30.14072 * 1 2 3 27 27 H 1.08999 * 109.46947 * 150.13835 * 1 2 3 28 28 H 1.07999 * 125.44037 * 179.76404 * 4 3 2 29 29 H 1.08003 * 127.02794 * 179.97438 * 5 4 3 30 30 H 0.96995 * 119.99792 * 0.02562 * 9 7 6 31 31 H 1.09001 * 109.46953 * 65.94547 * 10 9 7 32 32 H 1.09001 * 109.47025 * 305.94604 * 10 9 7 33 33 H 1.09000 * 110.72028 * 336.75707 * 13 11 10 34 34 H 1.08997 * 110.71960 * 100.02646 * 13 11 10 35 35 H 1.09004 * 110.95791 * 277.33159 * 14 13 11 36 36 H 1.09000 * 111.10201 * 153.45154 * 14 13 11 37 37 H 1.08997 * 110.36606 * 204.23127 * 15 14 13 38 38 H 1.09002 * 110.36594 * 82.02164 * 15 14 13 39 39 H 0.96998 * 120.00055 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 -0.0058 5 6 3.6849 -0.5990 -0.0046 6 6 2.3050 -1.1064 0.0027 7 6 1.8740 -2.5157 0.0056 8 8 0.6890 -2.7891 0.0111 9 7 2.7931 -3.5015 0.0022 10 6 2.3645 -4.9024 0.0057 11 6 3.5881 -5.8097 0.1500 12 1 4.2372 -5.7012 -0.7188 13 6 3.1383 -7.2794 0.2890 14 6 4.1321 -7.8514 1.3359 15 6 4.3345 -6.6319 2.2694 16 7 4.3270 -5.4618 1.3727 17 6 4.9116 -4.2516 1.6348 18 1 5.2636 -3.6345 0.8213 19 6 5.0519 -3.8180 2.9459 20 7 5.8874 -2.8416 3.2303 21 14 4.0550 -4.6204 4.3067 22 1 4.7601 -5.8363 4.7859 23 1 3.8949 -3.6650 5.4324 24 1 2.7173 -4.9977 3.7838 25 1 -0.3633 0.0025 1.0276 26 1 -0.3633 0.8887 -0.5160 27 1 -0.3633 -0.8912 -0.5117 28 1 4.4172 1.4284 -0.0107 29 1 4.5928 -1.1840 -0.0086 30 1 3.7382 -3.2834 -0.0019 31 1 1.8532 -5.1283 -0.9301 32 1 1.6854 -5.0726 0.8411 33 1 2.1150 -7.3361 0.6600 34 1 3.2345 -7.8036 -0.6618 35 1 5.0707 -8.1425 0.8642 36 1 3.6926 -8.6892 1.8773 37 1 5.2901 -6.7059 2.7884 38 1 3.5177 -6.5645 2.9880 39 1 5.9852 -2.5384 4.1465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027745205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:31 Heat of formation + Delta-G solvation = -21.087381 kcal Electronic energy + Delta-G solvation = -22424.602190 eV Core-core repulsion = 19140.643520 eV Total energy + Delta-G solvation = -3283.958670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.48754 -40.57488 -39.33853 -35.47033 -34.66340 -33.96353 -32.77428 -31.79918 -30.88175 -27.95880 -26.63177 -25.70123 -23.90284 -22.55079 -21.73577 -21.35063 -20.45257 -19.15865 -18.46294 -17.38569 -17.22526 -17.08868 -16.87122 -16.47351 -15.77078 -15.34277 -15.21197 -14.91317 -14.39672 -14.30586 -14.10207 -14.02075 -13.79698 -13.75736 -13.39886 -13.02244 -12.79247 -12.70724 -12.65774 -12.30845 -12.03795 -11.80503 -11.64402 -11.31315 -10.94326 -10.81206 -10.77872 -9.91319 -9.47108 -8.93019 -8.18645 -5.49314 0.37272 1.16121 1.23430 1.34298 1.40365 1.87870 2.32680 2.38472 2.52680 3.13714 3.28927 3.65481 3.85140 3.90174 3.95211 4.00676 4.17106 4.30974 4.38757 4.45504 4.62008 4.64258 4.69807 4.73437 4.77558 4.82347 4.93565 5.01743 5.03260 5.15430 5.23363 5.28329 5.38044 5.48305 5.62767 5.76026 6.05337 6.10677 6.70400 6.77444 7.30899 7.54582 8.16460 8.99829 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017752 B = 0.006731 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.951555 B = 4158.825298 C = 4973.528896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.064 3.936 3 O -0.176 6.176 4 C -0.030 4.030 5 C -0.198 4.198 6 C -0.271 4.271 7 C 0.576 3.424 8 O -0.589 6.589 9 N -0.697 5.697 10 C 0.117 3.883 11 C 0.140 3.860 12 H 0.060 0.940 13 C -0.114 4.114 14 C -0.116 4.116 15 C 0.099 3.901 16 N -0.619 5.619 17 C -0.215 4.215 18 H 0.073 0.927 19 C -0.015 4.015 20 N -0.941 5.941 21 Si 0.930 3.070 22 H -0.274 1.274 23 H -0.318 1.318 24 H -0.284 1.284 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.249 0.751 29 H 0.151 0.849 30 H 0.410 0.590 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.039 0.961 38 H 0.009 0.991 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 -0.315 -8.701 10.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.010 3.990 3 O -0.072 6.072 4 C -0.094 4.094 5 C -0.217 4.217 6 C -0.275 4.275 7 C 0.365 3.635 8 O -0.474 6.474 9 N -0.349 5.349 10 C -0.008 4.008 11 C 0.033 3.967 12 H 0.078 0.922 13 C -0.152 4.152 14 C -0.154 4.154 15 C -0.025 4.025 16 N -0.344 5.344 17 C -0.344 4.344 18 H 0.090 0.910 19 C -0.211 4.211 20 N -0.587 5.587 21 Si 0.762 3.238 22 H -0.200 1.200 23 H -0.247 1.247 24 H -0.210 1.210 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.264 0.736 29 H 0.168 0.832 30 H 0.250 0.750 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.027 0.973 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.758 -0.092 -8.571 10.916 hybrid contribution 0.478 -0.106 1.440 1.521 sum -6.281 -0.198 -7.131 9.505 Atomic orbital electron populations 1.20599 0.82154 1.05516 1.04724 1.23176 0.95132 0.82910 0.97734 1.83745 1.17589 1.34403 1.71472 1.24499 0.83649 0.96223 1.05072 1.23037 0.96276 0.95775 1.06605 1.21362 0.94806 0.93844 1.17535 1.17547 0.85267 0.84909 0.75751 1.90627 1.17539 1.84924 1.54290 1.46061 1.10659 1.06056 1.72121 1.21933 0.97952 0.80693 1.00265 1.21593 0.90554 0.94346 0.90166 0.92249 1.22585 0.99209 0.92439 1.00951 1.22695 1.00266 0.95877 0.96611 1.22067 0.97769 0.88587 0.94123 1.45015 1.61762 1.09454 1.18209 1.18339 1.29582 0.94300 0.92150 0.90959 1.25577 0.99367 0.97155 0.99047 1.69839 1.37644 1.31819 1.19416 0.86170 0.80549 0.77107 0.79978 1.20016 1.24729 1.20991 0.89151 0.87500 0.88803 0.73551 0.83164 0.74984 0.90639 0.94505 0.90858 0.87462 0.89974 0.88873 0.94310 0.97337 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.93 9.89 71.24 0.70 -1.23 16 2 C 0.06 2.10 7.37 25.26 0.19 2.29 16 3 O -0.18 -5.25 10.52 4.48 0.05 -5.20 16 4 C -0.03 -0.83 12.03 66.89 0.80 -0.03 16 5 C -0.20 -6.99 10.60 23.65 0.25 -6.74 16 6 C -0.27 -10.48 6.31 -18.99 -0.12 -10.60 16 7 C 0.58 24.58 7.81 86.65 0.68 25.26 16 8 O -0.59 -26.53 14.83 -4.07 -0.06 -26.59 16 9 N -0.70 -28.87 4.82 -466.40 -2.25 -31.11 16 10 C 0.12 4.39 5.26 86.38 0.45 4.84 16 11 C 0.14 4.88 3.41 45.34 0.15 5.04 16 12 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 13 C -0.11 -3.00 6.48 31.82 0.21 -2.79 16 14 C -0.12 -3.26 7.10 32.03 0.23 -3.03 16 15 C 0.10 4.00 4.79 86.85 0.42 4.41 16 16 N -0.62 -27.29 2.82 -668.26 -1.88 -29.17 16 17 C -0.21 -11.16 8.44 84.03 0.71 -10.45 16 18 H 0.07 3.92 6.74 -2.91 -0.02 3.90 16 19 C -0.02 -0.85 5.46 84.86 0.46 -0.39 16 20 N -0.94 -56.12 13.97 21.65 0.30 -55.81 16 21 Si 0.93 47.91 24.37 68.60 1.67 49.58 16 22 H -0.27 -13.34 6.86 99.48 0.68 -12.66 16 23 H -0.32 -16.95 7.11 99.48 0.71 -16.24 16 24 H -0.28 -14.84 6.64 99.48 0.66 -14.17 16 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.09 2.74 6.49 -2.39 -0.02 2.73 16 28 H 0.25 4.55 8.06 -2.91 -0.02 4.52 16 29 H 0.15 5.55 7.74 -2.91 -0.02 5.52 16 30 H 0.41 17.46 4.72 -92.71 -0.44 17.03 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.45 16 32 H 0.04 1.55 8.05 -2.39 -0.02 1.53 16 33 H 0.07 1.89 7.80 -2.39 -0.02 1.87 16 34 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 36 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.04 1.68 7.43 -2.39 -0.02 1.66 16 38 H 0.01 0.39 5.24 -2.39 -0.01 0.38 16 39 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -69.95 314.46 3.52 -66.43 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.56 Total: 25.30 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.13 Total: 6.58 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -3.83 Total: -116.09 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.01 Total: -31.80 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.67 Total: 49.58 kcal Total: -69.95 3.52 -66.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027745205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.342 kcal (2) G-P(sol) polarization free energy of solvation -69.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds