Wall clock time and date at job start Tue Mar 31 2020 01:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40359 * 126.64792 * 2 1 4 4 C 1.35130 * 107.12039 * 180.02562 * 3 2 1 5 5 O 1.33935 * 108.76622 * 359.77604 * 4 3 2 6 6 C 1.34915 * 109.38152 * 0.37522 * 5 4 3 7 7 C 1.46656 * 125.98787 * 179.88997 * 6 5 4 8 8 O 1.21695 * 120.00195 * 179.68890 * 7 6 5 9 9 N 1.34776 * 119.99952 * 359.68451 * 7 6 5 10 10 C 1.46504 * 120.00076 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47162 * 185.66222 * 10 9 7 12 12 H 1.09004 * 109.99515 * 304.84485 * 11 10 9 13 13 C 1.54316 * 109.88387 * 65.94059 * 11 10 9 14 14 C 1.55442 * 102.97298 * 141.61005 * 13 11 10 15 15 C 1.54911 * 101.44776 * 324.51734 * 14 13 11 16 16 N 1.47022 * 109.88250 * 183.75215 * 11 10 9 17 17 C 1.36937 * 125.64936 * 61.61637 * 16 11 10 18 18 H 1.07998 * 119.99883 * 14.69459 * 17 16 11 19 19 C 1.38813 * 119.99801 * 194.69117 * 17 16 11 20 20 N 1.31623 * 120.00245 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99970 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47538 * 89.99700 * 21 19 17 23 23 H 1.48502 * 109.47120 * 210.00051 * 21 19 17 24 24 H 1.48500 * 109.47069 * 329.99560 * 21 19 17 25 25 H 1.08997 * 109.47048 * 269.95367 * 1 2 3 26 26 H 1.08997 * 109.47281 * 29.95263 * 1 2 3 27 27 H 1.09004 * 109.47222 * 149.95511 * 1 2 3 28 28 H 1.08005 * 126.44365 * 0.04208 * 3 2 1 29 29 H 1.08005 * 125.62134 * 179.97438 * 4 3 2 30 30 H 0.97000 * 119.99871 * 0.02562 * 9 7 6 31 31 H 1.09008 * 109.46806 * 65.66284 * 10 9 7 32 32 H 1.08996 * 109.47151 * 305.66500 * 10 9 7 33 33 H 1.09007 * 110.72260 * 259.97260 * 13 11 10 34 34 H 1.09003 * 110.72109 * 23.24730 * 13 11 10 35 35 H 1.08996 * 111.12331 * 206.46771 * 14 13 11 36 36 H 1.09003 * 111.01334 * 82.52009 * 14 13 11 37 37 H 1.08994 * 110.36948 * 278.10881 * 15 14 13 38 38 H 1.09004 * 110.36747 * 155.89649 * 15 14 13 39 39 H 0.96994 * 119.99803 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6183 0.6744 -0.0006 5 8 3.6005 -0.6648 0.0040 6 6 2.3220 -1.0956 -0.0007 7 6 1.8843 -2.4953 -0.0002 8 8 0.6968 -2.7615 0.0009 9 7 2.7971 -3.4868 -0.0011 10 6 2.3599 -4.8851 0.0000 11 6 3.5778 -5.8002 0.1410 12 1 4.3026 -5.5795 -0.6427 13 6 4.2264 -5.6009 1.5270 14 6 4.6484 -7.0429 1.9254 15 6 3.4924 -7.8793 1.3221 16 7 3.1592 -7.2068 0.0531 17 6 2.5587 -7.7948 -1.0280 18 1 2.5675 -7.2980 -1.9869 19 6 1.9389 -9.0293 -0.8914 20 7 1.9287 -9.6350 0.2771 21 14 1.1204 -9.8317 -2.3664 22 1 2.1070 -10.6840 -3.0773 23 1 -0.0168 -10.6689 -1.9068 24 1 0.6200 -8.7800 -3.2878 25 1 -0.3633 -0.0008 1.0276 26 1 -0.3634 0.8904 -0.5131 27 1 -0.3634 -0.8896 -0.5145 28 1 2.0306 2.1595 0.0006 29 1 4.5047 1.2916 -0.0011 30 1 3.7436 -3.2747 -0.0016 31 1 1.8460 -5.1057 -0.9357 32 1 1.6807 -5.0527 0.8358 33 1 5.0981 -4.9503 1.4550 34 1 3.5029 -5.2009 2.2374 35 1 4.6878 -7.1554 3.0089 36 1 5.6025 -7.3105 1.4714 37 1 2.6319 -7.8752 1.9910 38 1 3.8214 -8.9015 1.1347 39 1 1.4959 -10.4978 0.3724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027755606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:05 Heat of formation + Delta-G solvation = -2.801453 kcal Electronic energy + Delta-G solvation = -21562.597213 eV Core-core repulsion = 18279.431480 eV Total energy + Delta-G solvation = -3283.165733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.78553 -39.27642 -37.59855 -34.70110 -33.84190 -32.48181 -30.72582 -29.64500 -28.81846 -27.44283 -24.94924 -24.07335 -22.52278 -21.22302 -20.30730 -19.99143 -19.39963 -18.09746 -16.71745 -16.46439 -16.00588 -15.84319 -14.87205 -14.67562 -14.41898 -13.99191 -13.74435 -13.31556 -13.17195 -13.08180 -12.96682 -12.61377 -12.08889 -11.89352 -11.85557 -11.73842 -11.33306 -10.95212 -10.78560 -10.26434 -10.13255 -10.03840 -9.88170 -9.84025 -9.78165 -9.69459 -8.90176 -8.61029 -8.51800 -6.85092 -5.77427 -3.14366 1.03389 2.22171 2.66045 3.30723 3.38465 3.44075 3.46555 3.48339 4.47785 4.58817 4.66045 4.90209 5.31954 5.33943 5.39999 5.41306 5.49007 5.61364 5.67001 5.67494 5.81024 5.91604 6.03559 6.05922 6.12068 6.24650 6.31687 6.45003 6.52196 6.58793 6.67387 6.73992 6.81199 7.04346 7.50940 7.60473 7.71638 7.78662 8.24296 8.32204 9.16669 9.77121 10.44465 11.34516 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022958 B = 0.004172 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.332806 B = 6710.412801 C = 7488.616737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.095 4.095 3 C -0.225 4.225 4 C -0.011 4.011 5 O -0.163 6.163 6 C -0.077 4.077 7 C 0.594 3.406 8 O -0.520 6.520 9 N -0.710 5.710 10 C 0.108 3.892 11 C 0.152 3.848 12 H 0.038 0.962 13 C -0.127 4.127 14 C -0.148 4.148 15 C 0.172 3.828 16 N -0.588 5.588 17 C -0.235 4.235 18 H 0.076 0.924 19 C 0.000 4.000 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.208 0.792 30 H 0.400 0.600 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.901 19.158 1.759 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.245 4.245 4 C -0.081 4.081 5 O -0.059 6.059 6 C -0.129 4.129 7 C 0.379 3.621 8 O -0.398 6.398 9 N -0.360 5.360 10 C -0.017 4.017 11 C 0.043 3.957 12 H 0.056 0.944 13 C -0.165 4.165 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.313 5.313 17 C -0.364 4.364 18 H 0.094 0.906 19 C -0.198 4.198 20 N -0.561 5.561 21 Si 0.741 3.259 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.171 0.829 29 H 0.225 0.775 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.170 18.454 1.716 18.997 hybrid contribution -0.054 0.016 -0.719 0.721 sum 4.116 18.470 0.998 18.949 Atomic orbital electron populations 1.20416 0.88275 1.03549 1.02857 1.20639 0.97700 0.91000 1.00445 1.21725 0.92519 1.00055 1.10152 1.24310 0.99856 0.80768 1.03187 1.84069 1.28538 1.22583 1.70672 1.22143 0.81271 0.95218 1.14234 1.16589 0.86054 0.81693 0.77740 1.90857 1.15738 1.82195 1.51031 1.46083 1.09475 1.07223 1.73240 1.22351 0.99661 0.76829 1.02855 1.21131 0.92847 0.86593 0.95120 0.94404 1.22662 0.99321 0.97530 0.96962 1.23055 1.00377 0.95831 0.99446 1.21459 0.92120 0.95760 0.85961 1.44491 1.70457 1.02088 1.14223 1.18992 1.28007 1.01650 0.87725 0.90616 1.24917 0.99524 0.98404 0.96912 1.69939 1.47663 1.16475 1.22016 0.86143 0.78985 0.79177 0.81616 1.21520 1.21563 1.20494 0.90896 0.91699 0.89338 0.82861 0.77520 0.76584 0.91104 0.91206 0.92359 0.91814 0.92291 0.92286 0.95564 0.90930 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.81 36.00 0.35 -0.76 16 2 C -0.09 -1.21 6.20 -104.44 -0.65 -1.86 16 3 C -0.23 -2.19 10.83 -39.89 -0.43 -2.62 16 4 C -0.01 -0.10 12.08 29.63 0.36 0.26 16 5 O -0.16 -1.96 10.40 4.98 0.05 -1.91 16 6 C -0.08 -1.09 7.13 -36.79 -0.26 -1.35 16 7 C 0.59 10.04 7.79 -12.86 -0.10 9.94 16 8 O -0.52 -10.34 14.73 5.19 0.08 -10.27 16 9 N -0.71 -11.39 5.34 -61.62 -0.33 -11.72 16 10 C 0.11 2.10 5.09 -4.04 -0.02 2.08 16 11 C 0.15 3.01 3.20 -66.96 -0.21 2.80 16 12 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 13 C -0.13 -2.14 6.18 -24.75 -0.15 -2.30 16 14 C -0.15 -2.73 7.11 -24.43 -0.17 -2.90 16 15 C 0.17 4.09 5.41 -2.53 -0.01 4.08 16 16 N -0.59 -14.61 3.13 -162.58 -0.51 -15.11 16 17 C -0.24 -6.44 9.73 -15.06 -0.15 -6.59 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 20 N -0.92 -26.59 10.57 55.49 0.59 -26.00 16 21 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.24 6.45 -51.93 -0.33 0.91 16 28 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.21 0.88 8.06 -52.48 -0.42 0.45 16 30 H 0.40 5.42 8.14 -40.82 -0.33 5.08 16 31 H 0.07 1.55 7.88 -51.92 -0.41 1.14 16 32 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 33 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.06 1.07 7.79 -51.93 -0.40 0.67 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 38 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -31.76 325.46 -7.39 -39.15 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.60 Total: 3.24 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.55 Total: 0.66 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.25 Total: -52.83 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.13 Total: -12.18 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.76 -7.39 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027755606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.350 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds