Wall clock time and date at job start Tue Mar 31 2020 01:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40359 * 126.64792 * 2 1 4 4 C 1.35130 * 107.12039 * 180.02562 * 3 2 1 5 5 O 1.33935 * 108.76622 * 359.77604 * 4 3 2 6 6 C 1.34915 * 109.38152 * 0.37522 * 5 4 3 7 7 C 1.46656 * 125.98787 * 179.88997 * 6 5 4 8 8 O 1.21695 * 120.00195 * 179.68890 * 7 6 5 9 9 N 1.34776 * 119.99952 * 359.68451 * 7 6 5 10 10 C 1.46504 * 120.00076 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47162 * 185.66222 * 10 9 7 12 12 H 1.09004 * 109.99515 * 304.84485 * 11 10 9 13 13 C 1.54316 * 109.88387 * 65.94059 * 11 10 9 14 14 C 1.55442 * 102.97298 * 141.61005 * 13 11 10 15 15 C 1.54911 * 101.44776 * 324.51734 * 14 13 11 16 16 N 1.47022 * 109.88250 * 183.75215 * 11 10 9 17 17 C 1.36937 * 125.64936 * 61.61637 * 16 11 10 18 18 H 1.07998 * 119.99883 * 14.69459 * 17 16 11 19 19 C 1.38813 * 119.99801 * 194.69117 * 17 16 11 20 20 N 1.31623 * 120.00245 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99970 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47538 * 89.99700 * 21 19 17 23 23 H 1.48502 * 109.47120 * 210.00051 * 21 19 17 24 24 H 1.48500 * 109.47069 * 329.99560 * 21 19 17 25 25 H 1.08997 * 109.47048 * 269.95367 * 1 2 3 26 26 H 1.08997 * 109.47281 * 29.95263 * 1 2 3 27 27 H 1.09004 * 109.47222 * 149.95511 * 1 2 3 28 28 H 1.08005 * 126.44365 * 0.04208 * 3 2 1 29 29 H 1.08005 * 125.62134 * 179.97438 * 4 3 2 30 30 H 0.97000 * 119.99871 * 0.02562 * 9 7 6 31 31 H 1.09008 * 109.46806 * 65.66284 * 10 9 7 32 32 H 1.08996 * 109.47151 * 305.66500 * 10 9 7 33 33 H 1.09007 * 110.72260 * 259.97260 * 13 11 10 34 34 H 1.09003 * 110.72109 * 23.24730 * 13 11 10 35 35 H 1.08996 * 111.12331 * 206.46771 * 14 13 11 36 36 H 1.09003 * 111.01334 * 82.52009 * 14 13 11 37 37 H 1.08994 * 110.36948 * 278.10881 * 15 14 13 38 38 H 1.09004 * 110.36747 * 155.89649 * 15 14 13 39 39 H 0.96994 * 119.99803 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6183 0.6744 -0.0006 5 8 3.6005 -0.6648 0.0040 6 6 2.3220 -1.0956 -0.0007 7 6 1.8843 -2.4953 -0.0002 8 8 0.6968 -2.7615 0.0009 9 7 2.7971 -3.4868 -0.0011 10 6 2.3599 -4.8851 0.0000 11 6 3.5778 -5.8002 0.1410 12 1 4.3026 -5.5795 -0.6427 13 6 4.2264 -5.6009 1.5270 14 6 4.6484 -7.0429 1.9254 15 6 3.4924 -7.8793 1.3221 16 7 3.1592 -7.2068 0.0531 17 6 2.5587 -7.7948 -1.0280 18 1 2.5675 -7.2980 -1.9869 19 6 1.9389 -9.0293 -0.8914 20 7 1.9287 -9.6350 0.2771 21 14 1.1204 -9.8317 -2.3664 22 1 2.1070 -10.6840 -3.0773 23 1 -0.0168 -10.6689 -1.9068 24 1 0.6200 -8.7800 -3.2878 25 1 -0.3633 -0.0008 1.0276 26 1 -0.3634 0.8904 -0.5131 27 1 -0.3634 -0.8896 -0.5145 28 1 2.0306 2.1595 0.0006 29 1 4.5047 1.2916 -0.0011 30 1 3.7436 -3.2747 -0.0016 31 1 1.8460 -5.1057 -0.9357 32 1 1.6807 -5.0527 0.8358 33 1 5.0981 -4.9503 1.4550 34 1 3.5029 -5.2009 2.2374 35 1 4.6878 -7.1554 3.0089 36 1 5.6025 -7.3105 1.4714 37 1 2.6319 -7.8752 1.9910 38 1 3.8214 -8.9015 1.1347 39 1 1.4959 -10.4978 0.3724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027755606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:04 Heat of formation + Delta-G solvation = -24.282509 kcal Electronic energy + Delta-G solvation = -21563.528701 eV Core-core repulsion = 18279.431480 eV Total energy + Delta-G solvation = -3284.097221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.65332 -40.66747 -39.25215 -36.03646 -34.95364 -34.40047 -31.82110 -31.29456 -30.34316 -28.54207 -26.73270 -25.73699 -23.61789 -22.20856 -21.97445 -21.39273 -20.79677 -19.31225 -18.54153 -17.46150 -17.36003 -16.94820 -16.67084 -16.14661 -15.87867 -15.68145 -15.07832 -14.63269 -14.41159 -14.06755 -13.95272 -13.86901 -13.67152 -13.52064 -13.40658 -13.01916 -12.88604 -12.77537 -12.66006 -12.03899 -11.89649 -11.76534 -11.51175 -11.43204 -11.24988 -10.68718 -10.65712 -10.26243 -9.54796 -8.87939 -7.89557 -5.27653 0.04211 1.43698 1.43993 1.46234 1.54577 1.69571 2.08737 2.22382 2.49647 3.30066 3.65693 3.78431 3.84274 3.91842 3.95722 3.99717 4.24116 4.41896 4.51313 4.54915 4.63895 4.69735 4.74449 4.78555 4.91646 4.96770 5.10824 5.11280 5.14579 5.23469 5.29066 5.45304 5.46993 5.53569 5.64973 5.76885 5.89061 6.21590 6.47740 7.04119 7.08087 7.74402 8.40530 9.21378 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022958 B = 0.004172 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.332806 B = 6710.412801 C = 7488.616737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.095 4.095 3 C -0.235 4.235 4 C 0.017 3.983 5 O -0.169 6.169 6 C -0.117 4.117 7 C 0.592 3.408 8 O -0.563 6.563 9 N -0.699 5.699 10 C 0.129 3.871 11 C 0.148 3.852 12 H 0.052 0.948 13 C -0.114 4.114 14 C -0.133 4.133 15 C 0.173 3.827 16 N -0.610 5.610 17 C -0.243 4.243 18 H 0.077 0.923 19 C -0.057 4.057 20 N -0.945 5.945 21 Si 0.972 3.028 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.273 1.273 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.185 0.815 29 H 0.259 0.741 30 H 0.415 0.585 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.071 0.929 37 H -0.008 1.008 38 H 0.037 0.963 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.078 22.513 1.625 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.254 4.254 4 C -0.053 4.053 5 O -0.065 6.065 6 C -0.168 4.168 7 C 0.380 3.620 8 O -0.444 6.444 9 N -0.350 5.350 10 C 0.003 3.997 11 C 0.041 3.959 12 H 0.069 0.931 13 C -0.151 4.151 14 C -0.171 4.171 15 C 0.048 3.952 16 N -0.335 5.335 17 C -0.372 4.372 18 H 0.095 0.905 19 C -0.251 4.251 20 N -0.593 5.593 21 Si 0.801 3.199 22 H -0.208 1.208 23 H -0.221 1.221 24 H -0.198 1.198 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.202 0.798 29 H 0.275 0.725 30 H 0.252 0.748 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.010 0.990 38 H 0.056 0.944 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.392 21.852 1.576 22.822 hybrid contribution -0.691 -0.840 -0.683 1.284 sum 5.701 21.012 0.892 21.790 Atomic orbital electron populations 1.20423 0.88364 1.03425 1.02999 1.21018 0.98124 0.91947 0.98762 1.22091 0.92246 1.00586 1.10458 1.25401 1.01437 0.79542 0.98871 1.84054 1.27146 1.24364 1.70951 1.21517 0.82775 0.93814 1.18697 1.16947 0.85491 0.83004 0.76569 1.90829 1.17448 1.83260 1.52887 1.45777 1.10277 1.05577 1.73331 1.21792 0.98844 0.79044 1.00019 1.21323 0.92851 0.84027 0.97710 0.93052 1.22645 1.00614 0.97345 0.94531 1.22923 0.98246 0.95253 1.00672 1.21277 0.93018 0.95318 0.85564 1.44751 1.70337 1.04588 1.13797 1.19310 1.27412 1.01713 0.88758 0.90543 1.25686 1.00736 0.99292 0.99425 1.70140 1.48791 1.16543 1.23797 0.85175 0.77809 0.78181 0.78767 1.20785 1.22088 1.19809 0.90600 0.88951 0.92265 0.79795 0.72492 0.74772 0.94283 0.93907 0.87931 0.91805 0.89827 0.91003 0.98980 0.94420 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.21 9.81 71.23 0.70 -1.51 16 2 C -0.10 -2.27 6.20 -19.74 -0.12 -2.40 16 3 C -0.24 -3.62 10.83 22.07 0.24 -3.38 16 4 C 0.02 0.21 12.08 67.10 0.81 1.02 16 5 O -0.17 -3.55 10.40 -5.09 -0.05 -3.61 16 6 C -0.12 -3.20 7.13 24.07 0.17 -3.03 16 7 C 0.59 20.37 7.79 86.44 0.67 21.04 16 8 O -0.56 -23.58 14.73 -4.33 -0.06 -23.65 16 9 N -0.70 -22.31 5.34 -467.09 -2.49 -24.81 16 10 C 0.13 5.18 5.09 86.38 0.44 5.62 16 11 C 0.15 5.83 3.20 45.34 0.15 5.97 16 12 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 13 C -0.11 -3.57 6.18 31.88 0.20 -3.37 16 14 C -0.13 -4.64 7.11 32.09 0.23 -4.41 16 15 C 0.17 8.51 5.41 86.86 0.47 8.98 16 16 N -0.61 -31.05 3.13 -668.27 -2.09 -33.14 16 17 C -0.24 -13.68 9.73 84.03 0.82 -12.86 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.06 -3.31 5.47 84.86 0.46 -2.85 16 20 N -0.94 -57.38 10.57 21.65 0.23 -57.15 16 21 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.73 6.45 -2.39 -0.02 1.71 16 28 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 29 H 0.26 0.42 8.06 -2.91 -0.02 0.40 16 30 H 0.42 10.55 8.14 -92.71 -0.75 9.79 16 31 H 0.04 1.80 7.88 -2.38 -0.02 1.78 16 32 H 0.04 1.94 8.04 -2.39 -0.02 1.92 16 33 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.06 2.03 7.79 -2.39 -0.02 2.01 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H -0.01 -0.43 8.06 -2.39 -0.02 -0.45 16 38 H 0.04 2.08 6.93 -2.39 -0.02 2.06 16 39 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -74.57 325.46 3.09 -71.48 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.30 Total: 13.33 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 5.23 Total: 8.83 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -4.36 Total: -115.10 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.12 Total: -27.26 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -74.57 3.09 -71.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027755606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.196 kcal (2) G-P(sol) polarization free energy of solvation -74.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds