Wall clock time and date at job start Tue Mar 31 2020 01:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40367 * 126.64924 * 2 1 4 4 C 1.35129 * 107.11527 * 180.22119 * 3 2 1 5 5 O 1.33930 * 108.76681 * 359.78461 * 4 3 2 6 6 C 1.34908 * 109.38590 * 359.97438 * 5 4 3 7 7 C 1.46658 * 125.98783 * 179.97438 * 6 5 4 8 8 O 1.21695 * 120.00282 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00014 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00381 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47369 * 185.93950 * 10 9 7 12 12 H 1.09000 * 109.99577 * 299.53768 * 11 10 9 13 13 C 1.54331 * 109.88327 * 178.44246 * 11 10 9 14 14 C 1.55155 * 102.94126 * 218.38824 * 13 11 10 15 15 C 1.54915 * 101.58403 * 35.49883 * 14 13 11 16 16 N 1.47020 * 109.88462 * 60.63198 * 11 10 9 17 17 C 1.36930 * 125.64865 * 298.30958 * 16 11 10 18 18 H 1.08003 * 120.00277 * 339.94295 * 17 16 11 19 19 C 1.38814 * 120.00168 * 159.93044 * 17 16 11 20 20 N 1.31615 * 120.00190 * 162.60991 * 19 17 16 21 21 Si 1.86804 * 120.00024 * 342.61635 * 19 17 16 22 22 H 1.48495 * 109.46954 * 86.47496 * 21 19 17 23 23 H 1.48494 * 109.47073 * 206.48037 * 21 19 17 24 24 H 1.48503 * 109.46957 * 326.48088 * 21 19 17 25 25 H 1.09005 * 109.47133 * 270.15353 * 1 2 3 26 26 H 1.08998 * 109.47010 * 30.15262 * 1 2 3 27 27 H 1.09005 * 109.47212 * 150.15481 * 1 2 3 28 28 H 1.07999 * 126.43500 * 0.02849 * 3 2 1 29 29 H 1.07997 * 125.61469 * 179.77628 * 4 3 2 30 30 H 0.97002 * 120.00072 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.47360 * 65.93328 * 10 9 7 32 32 H 1.09002 * 109.46774 * 305.93727 * 10 9 7 33 33 H 1.08997 * 110.71874 * 336.74879 * 13 11 10 34 34 H 1.09004 * 110.71746 * 100.02331 * 13 11 10 35 35 H 1.08999 * 111.00572 * 153.57736 * 14 13 11 36 36 H 1.09009 * 111.00346 * 277.42619 * 14 13 11 37 37 H 1.08996 * 110.36398 * 81.83047 * 15 14 13 38 38 H 1.08999 * 110.36396 * 204.04041 * 15 14 13 39 39 H 0.97002 * 120.00348 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6744 -0.0050 5 8 3.6005 -0.6648 -0.0032 6 6 2.3220 -1.0955 0.0034 7 6 1.8842 -2.4953 0.0067 8 8 0.6967 -2.7614 0.0123 9 7 2.7970 -3.4868 0.0035 10 6 2.3598 -4.8851 0.0063 11 6 3.5775 -5.8000 0.1510 12 1 4.2604 -5.6465 -0.6846 13 6 3.1240 -7.2745 0.1942 14 6 4.0774 -7.9006 1.2460 15 6 4.2402 -6.7338 2.2519 16 7 4.2670 -5.5180 1.4185 17 6 4.8401 -4.3242 1.7669 18 1 5.1003 -3.6067 1.0027 19 6 5.0865 -4.0360 3.1022 20 7 5.9266 -3.0753 3.4240 21 14 4.2257 -5.0117 4.4426 22 1 5.0083 -6.2376 4.7425 23 1 4.1183 -4.1806 5.6684 24 1 2.8663 -5.3927 3.9821 25 1 -0.3634 0.0028 1.0277 26 1 -0.3633 0.8886 -0.5162 27 1 -0.3634 -0.8914 -0.5114 28 1 2.0306 2.1594 0.0004 29 1 4.5046 1.2915 -0.0097 30 1 3.7435 -3.2747 -0.0013 31 1 1.8474 -5.1074 -0.9298 32 1 1.6792 -5.0512 0.8413 33 1 2.0868 -7.3495 0.5209 34 1 3.2583 -7.7480 -0.7784 35 1 3.6184 -8.7666 1.7230 36 1 5.0347 -8.1656 0.7969 37 1 3.3944 -6.7044 2.9388 38 1 5.1737 -6.8373 2.8051 39 1 6.0991 -2.8742 4.3571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027755607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:10 Heat of formation + Delta-G solvation = 5.302850 kcal Electronic energy + Delta-G solvation = -22373.593191 eV Core-core repulsion = 19090.778887 eV Total energy + Delta-G solvation = -3282.814304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.36371 -39.08960 -37.85531 -34.36857 -33.48093 -32.67265 -30.44711 -30.01242 -29.31879 -27.30167 -25.04217 -23.91976 -22.26974 -21.22517 -20.64340 -19.85714 -19.19317 -17.78233 -16.77228 -16.09362 -15.80950 -15.60785 -15.25790 -15.10435 -14.23250 -13.80753 -13.38271 -13.19708 -13.04797 -12.90958 -12.74313 -12.62170 -12.59657 -12.27523 -11.69530 -11.56026 -11.34071 -11.18089 -11.00252 -10.74285 -10.55532 -10.00299 -9.90944 -9.63924 -9.45007 -9.38098 -8.82830 -8.56128 -8.15796 -7.09935 -5.98985 -3.33399 1.44117 2.59756 3.10426 3.31260 3.46424 3.46666 3.63757 3.83790 4.49655 4.86614 4.97653 5.01621 5.17044 5.22910 5.26415 5.38016 5.54347 5.64088 5.76768 5.79587 5.88255 5.90667 5.99302 6.06330 6.08210 6.22016 6.24843 6.29453 6.33726 6.37722 6.59419 6.64615 6.75494 6.80397 6.99621 7.20536 7.61892 8.10572 8.24482 8.63886 8.75727 9.62150 10.11361 11.16232 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.006574 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.926918 B = 4258.031978 C = 5106.541033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.104 4.104 3 C -0.232 4.232 4 C -0.004 4.004 5 O -0.150 6.150 6 C -0.068 4.068 7 C 0.596 3.404 8 O -0.542 6.542 9 N -0.689 5.689 10 C 0.113 3.887 11 C 0.146 3.854 12 H 0.050 0.950 13 C -0.122 4.122 14 C -0.130 4.130 15 C 0.102 3.898 16 N -0.603 5.603 17 C -0.242 4.242 18 H 0.091 0.909 19 C 0.026 3.974 20 N -0.907 5.907 21 Si 0.889 3.111 22 H -0.287 1.287 23 H -0.305 1.305 24 H -0.272 1.272 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.151 0.849 29 H 0.206 0.794 30 H 0.415 0.585 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.059 0.941 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.686 1.342 -8.156 10.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.251 4.251 4 C -0.075 4.075 5 O -0.044 6.044 6 C -0.121 4.121 7 C 0.382 3.618 8 O -0.423 6.423 9 N -0.341 5.341 10 C -0.013 4.013 11 C 0.039 3.961 12 H 0.068 0.932 13 C -0.161 4.161 14 C -0.168 4.168 15 C -0.023 4.023 16 N -0.329 5.329 17 C -0.369 4.369 18 H 0.109 0.891 19 C -0.173 4.173 20 N -0.550 5.550 21 Si 0.720 3.280 22 H -0.214 1.214 23 H -0.233 1.233 24 H -0.198 1.198 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.169 0.831 29 H 0.223 0.777 30 H 0.256 0.744 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.101 1.087 -7.995 10.116 hybrid contribution 0.043 0.043 1.102 1.104 sum -6.057 1.130 -6.893 9.246 Atomic orbital electron populations 1.20348 0.88621 1.03016 1.02573 1.20543 0.97409 0.91085 1.01692 1.21635 0.92518 0.99780 1.11149 1.24309 0.99733 0.80997 1.02451 1.84168 1.28216 1.22357 1.69665 1.22007 0.81471 0.95065 1.13536 1.16560 0.85786 0.82045 0.77377 1.90765 1.15986 1.82624 1.52968 1.46077 1.10878 1.05787 1.71354 1.22008 0.98258 0.80491 1.00510 1.21307 0.91497 0.92367 0.90978 0.93194 1.22518 0.99498 0.94830 0.99249 1.22714 0.99336 0.97508 0.97284 1.22086 0.99669 0.86454 0.94071 1.44862 1.64061 1.08830 1.15115 1.18435 1.33165 0.92903 0.92371 0.89120 1.24990 0.98522 0.96834 0.96948 1.69771 1.34707 1.32787 1.17771 0.86952 0.80861 0.78504 0.81635 1.21400 1.23313 1.19813 0.91214 0.92017 0.89664 0.83125 0.77701 0.74438 0.92571 0.91596 0.91294 0.91221 0.91674 0.91253 0.95167 0.92314 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 9.81 36.01 0.35 -0.94 16 2 C -0.10 -1.74 6.20 -104.43 -0.65 -2.38 16 3 C -0.23 -3.24 10.83 -39.89 -0.43 -3.67 16 4 C 0.00 -0.06 12.08 29.63 0.36 0.30 16 5 O -0.15 -2.76 10.40 5.02 0.05 -2.71 16 6 C -0.07 -1.31 7.13 -36.80 -0.26 -1.57 16 7 C 0.60 12.27 7.79 -12.86 -0.10 12.17 16 8 O -0.54 -11.75 14.73 5.19 0.08 -11.68 16 9 N -0.69 -13.89 4.80 -61.63 -0.30 -14.19 16 10 C 0.11 2.11 5.19 -4.04 -0.02 2.09 16 11 C 0.15 2.68 3.36 -66.95 -0.22 2.45 16 12 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 13 C -0.12 -1.82 6.48 -24.89 -0.16 -1.98 16 14 C -0.13 -2.06 7.08 -24.58 -0.17 -2.23 16 15 C 0.10 2.14 4.69 -2.53 -0.01 2.12 16 16 N -0.60 -13.65 2.94 -162.57 -0.48 -14.13 16 17 C -0.24 -6.38 9.00 -15.06 -0.14 -6.52 16 18 H 0.09 2.49 6.30 -52.48 -0.33 2.16 16 19 C 0.03 0.74 5.47 -17.43 -0.10 0.65 16 20 N -0.91 -27.16 13.97 55.49 0.78 -26.38 16 21 Si 0.89 22.75 24.27 -169.99 -4.13 18.62 16 22 H -0.29 -7.06 6.62 56.52 0.37 -6.69 16 23 H -0.30 -8.03 7.11 56.52 0.40 -7.62 16 24 H -0.27 -6.94 6.16 56.52 0.35 -6.59 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.35 6.45 -51.93 -0.33 1.02 16 28 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.21 2.05 8.06 -52.49 -0.42 1.62 16 30 H 0.42 8.69 5.48 -40.82 -0.22 8.46 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 33 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.03 0.68 5.24 -51.93 -0.27 0.40 16 38 H 0.06 1.32 6.53 -51.93 -0.34 0.98 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -32.04 313.48 -6.18 -38.22 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.35 Total: 7.05 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.55 Total: 0.48 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.00 Total: -54.70 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.13 Total: -14.39 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.13 Total: 18.62 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.04 -6.18 -38.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027755607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.525 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds