Wall clock time and date at job start Tue Mar 31 2020 01:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40367 * 126.64924 * 2 1 4 4 C 1.35129 * 107.11527 * 180.22119 * 3 2 1 5 5 O 1.33930 * 108.76681 * 359.78461 * 4 3 2 6 6 C 1.34908 * 109.38590 * 359.97438 * 5 4 3 7 7 C 1.46658 * 125.98783 * 179.97438 * 6 5 4 8 8 O 1.21695 * 120.00282 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00014 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00381 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47369 * 185.93950 * 10 9 7 12 12 H 1.09000 * 109.99577 * 299.53768 * 11 10 9 13 13 C 1.54331 * 109.88327 * 178.44246 * 11 10 9 14 14 C 1.55155 * 102.94126 * 218.38824 * 13 11 10 15 15 C 1.54915 * 101.58403 * 35.49883 * 14 13 11 16 16 N 1.47020 * 109.88462 * 60.63198 * 11 10 9 17 17 C 1.36930 * 125.64865 * 298.30958 * 16 11 10 18 18 H 1.08003 * 120.00277 * 339.94295 * 17 16 11 19 19 C 1.38814 * 120.00168 * 159.93044 * 17 16 11 20 20 N 1.31615 * 120.00190 * 162.60991 * 19 17 16 21 21 Si 1.86804 * 120.00024 * 342.61635 * 19 17 16 22 22 H 1.48495 * 109.46954 * 86.47496 * 21 19 17 23 23 H 1.48494 * 109.47073 * 206.48037 * 21 19 17 24 24 H 1.48503 * 109.46957 * 326.48088 * 21 19 17 25 25 H 1.09005 * 109.47133 * 270.15353 * 1 2 3 26 26 H 1.08998 * 109.47010 * 30.15262 * 1 2 3 27 27 H 1.09005 * 109.47212 * 150.15481 * 1 2 3 28 28 H 1.07999 * 126.43500 * 0.02849 * 3 2 1 29 29 H 1.07997 * 125.61469 * 179.77628 * 4 3 2 30 30 H 0.97002 * 120.00072 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.47360 * 65.93328 * 10 9 7 32 32 H 1.09002 * 109.46774 * 305.93727 * 10 9 7 33 33 H 1.08997 * 110.71874 * 336.74879 * 13 11 10 34 34 H 1.09004 * 110.71746 * 100.02331 * 13 11 10 35 35 H 1.08999 * 111.00572 * 153.57736 * 14 13 11 36 36 H 1.09009 * 111.00346 * 277.42619 * 14 13 11 37 37 H 1.08996 * 110.36398 * 81.83047 * 15 14 13 38 38 H 1.08999 * 110.36396 * 204.04041 * 15 14 13 39 39 H 0.97002 * 120.00348 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6744 -0.0050 5 8 3.6005 -0.6648 -0.0032 6 6 2.3220 -1.0955 0.0034 7 6 1.8842 -2.4953 0.0067 8 8 0.6967 -2.7614 0.0123 9 7 2.7970 -3.4868 0.0035 10 6 2.3598 -4.8851 0.0063 11 6 3.5775 -5.8000 0.1510 12 1 4.2604 -5.6465 -0.6846 13 6 3.1240 -7.2745 0.1942 14 6 4.0774 -7.9006 1.2460 15 6 4.2402 -6.7338 2.2519 16 7 4.2670 -5.5180 1.4185 17 6 4.8401 -4.3242 1.7669 18 1 5.1003 -3.6067 1.0027 19 6 5.0865 -4.0360 3.1022 20 7 5.9266 -3.0753 3.4240 21 14 4.2257 -5.0117 4.4426 22 1 5.0083 -6.2376 4.7425 23 1 4.1183 -4.1806 5.6684 24 1 2.8663 -5.3927 3.9821 25 1 -0.3634 0.0028 1.0277 26 1 -0.3633 0.8886 -0.5162 27 1 -0.3634 -0.8914 -0.5114 28 1 2.0306 2.1594 0.0004 29 1 4.5046 1.2915 -0.0097 30 1 3.7435 -3.2747 -0.0013 31 1 1.8474 -5.1074 -0.9298 32 1 1.6792 -5.0512 0.8413 33 1 2.0868 -7.3495 0.5209 34 1 3.2583 -7.7480 -0.7784 35 1 3.6184 -8.7666 1.7230 36 1 5.0347 -8.1656 0.7969 37 1 3.3944 -6.7044 2.9388 38 1 5.1737 -6.8373 2.8051 39 1 6.0991 -2.8742 4.3571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027755607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:08 Heat of formation + Delta-G solvation = -17.218057 kcal Electronic energy + Delta-G solvation = -22374.569771 eV Core-core repulsion = 19090.778887 eV Total energy + Delta-G solvation = -3283.790884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.63157 -40.64623 -39.41839 -35.81904 -34.84767 -34.63774 -31.82482 -31.75733 -30.69215 -28.59159 -26.63746 -25.67439 -23.68852 -22.60861 -21.91935 -21.45080 -20.62990 -19.34541 -18.51747 -17.53477 -17.27051 -17.05790 -16.98190 -16.65833 -15.73755 -15.25631 -15.14482 -14.94695 -14.48737 -14.27335 -14.15681 -13.98845 -13.84581 -13.49661 -13.41880 -13.03250 -12.83208 -12.74370 -12.72998 -12.28063 -12.05202 -11.77619 -11.56988 -11.25428 -11.10419 -10.86773 -10.63958 -10.10833 -9.50094 -9.03082 -8.15140 -5.42869 0.08551 1.24436 1.35375 1.40051 1.43600 1.82753 2.15164 2.35612 2.43479 3.13032 3.26580 3.77650 3.84204 3.86310 3.95668 3.98704 4.15820 4.29900 4.43173 4.56219 4.61941 4.63567 4.71333 4.76443 4.77425 4.82401 4.99842 5.01668 5.12499 5.13394 5.21271 5.27735 5.41382 5.47776 5.55411 5.67862 5.95368 6.10923 6.54583 6.76140 7.09353 7.55475 8.12583 9.03621 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.006574 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.926918 B = 4258.031978 C = 5106.541033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.101 4.101 3 C -0.229 4.229 4 C 0.001 3.999 5 O -0.178 6.178 6 C -0.120 4.120 7 C 0.590 3.410 8 O -0.564 6.564 9 N -0.697 5.697 10 C 0.115 3.885 11 C 0.141 3.859 12 H 0.058 0.942 13 C -0.112 4.112 14 C -0.116 4.116 15 C 0.090 3.910 16 N -0.620 5.620 17 C -0.210 4.210 18 H 0.074 0.926 19 C -0.034 4.034 20 N -0.952 5.952 21 Si 0.938 3.062 22 H -0.274 1.274 23 H -0.320 1.320 24 H -0.274 1.274 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.066 0.934 28 H 0.190 0.810 29 H 0.247 0.753 30 H 0.409 0.591 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.019 0.981 38 H 0.039 0.961 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 0.815 -9.514 11.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C -0.247 4.247 4 C -0.069 4.069 5 O -0.074 6.074 6 C -0.171 4.171 7 C 0.377 3.623 8 O -0.447 6.447 9 N -0.347 5.347 10 C -0.010 4.010 11 C 0.034 3.966 12 H 0.076 0.924 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.035 4.035 16 N -0.346 5.346 17 C -0.339 4.339 18 H 0.091 0.909 19 C -0.229 4.229 20 N -0.600 5.600 21 Si 0.770 3.230 22 H -0.200 1.200 23 H -0.249 1.249 24 H -0.200 1.200 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.085 0.915 28 H 0.207 0.793 29 H 0.263 0.737 30 H 0.248 0.752 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.037 0.963 38 H 0.057 0.943 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.989 0.501 -9.384 11.712 hybrid contribution 0.309 0.296 1.400 1.464 sum -6.680 0.796 -7.984 10.441 Atomic orbital electron populations 1.20397 0.87369 1.03828 1.02826 1.21053 0.98523 0.91354 0.99435 1.22069 0.91673 1.00795 1.10211 1.25309 1.01762 0.79777 1.00013 1.84137 1.28167 1.24503 1.70546 1.21926 0.82449 0.95003 1.17724 1.16851 0.85613 0.82959 0.76844 1.90726 1.16513 1.83300 1.54147 1.46166 1.10487 1.06530 1.71517 1.22038 0.98118 0.79975 1.00876 1.21577 0.91120 0.94905 0.88954 0.92376 1.22562 0.99592 0.91776 1.01054 1.22681 1.00554 0.96231 0.95972 1.22196 0.98105 0.87957 0.95205 1.45050 1.64465 1.08277 1.16779 1.18466 1.30331 0.93539 0.91583 0.90898 1.25509 1.00086 0.98381 0.98892 1.69880 1.37229 1.35364 1.17517 0.86148 0.80025 0.77670 0.79165 1.19974 1.24925 1.19977 0.91109 0.88531 0.91477 0.79262 0.73701 0.75172 0.89937 0.93820 0.90399 0.87369 0.88640 0.90177 0.96337 0.94286 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.44 9.81 71.24 0.70 -1.75 16 2 C -0.10 -3.26 6.20 -19.74 -0.12 -3.39 16 3 C -0.23 -5.84 10.83 22.07 0.24 -5.60 16 4 C 0.00 0.02 12.08 67.10 0.81 0.83 16 5 O -0.18 -6.66 10.40 -4.97 -0.05 -6.71 16 6 C -0.12 -4.66 7.13 24.07 0.17 -4.49 16 7 C 0.59 24.99 7.79 86.44 0.67 25.67 16 8 O -0.56 -25.05 14.73 -4.33 -0.06 -25.12 16 9 N -0.70 -28.73 4.80 -467.11 -2.24 -30.98 16 10 C 0.12 4.22 5.19 86.38 0.45 4.67 16 11 C 0.14 4.92 3.36 45.34 0.15 5.07 16 12 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 13 C -0.11 -2.88 6.48 31.78 0.21 -2.68 16 14 C -0.12 -3.26 7.08 31.99 0.23 -3.03 16 15 C 0.09 3.64 4.69 86.86 0.41 4.05 16 16 N -0.62 -27.81 2.94 -668.25 -1.96 -29.78 16 17 C -0.21 -11.35 9.00 84.04 0.76 -10.59 16 18 H 0.07 4.15 6.30 -2.91 -0.02 4.14 16 19 C -0.03 -1.99 5.47 84.86 0.46 -1.53 16 20 N -0.95 -59.16 13.97 21.65 0.30 -58.85 16 21 Si 0.94 48.25 24.27 68.60 1.67 49.92 16 22 H -0.27 -13.23 6.62 99.48 0.66 -12.57 16 23 H -0.32 -17.02 7.11 99.48 0.71 -16.32 16 24 H -0.27 -13.91 6.16 99.48 0.61 -13.29 16 25 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 2.12 6.45 -2.38 -0.02 2.11 16 28 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.25 4.18 8.06 -2.91 -0.02 4.15 16 30 H 0.41 17.76 5.48 -92.71 -0.51 17.25 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.04 1.79 8.12 -2.39 -0.02 1.77 16 33 H 0.08 1.92 7.85 -2.39 -0.02 1.90 16 34 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.02 0.82 5.24 -2.39 -0.01 0.80 16 38 H 0.04 1.72 6.53 -2.39 -0.02 1.71 16 39 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -73.20 313.48 3.19 -70.01 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.42 Total: 24.26 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 5.13 Total: 7.25 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -3.91 Total: -119.61 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.12 Total: -31.82 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.67 Total: 49.92 kcal Total: -73.20 3.19 -70.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027755607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.792 kcal (2) G-P(sol) polarization free energy of solvation -73.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds