Wall clock time and date at job start Tue Mar 31 2020 00:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34176 * 125.43897 * 2 1 4 4 C 1.47021 * 105.95888 * 180.02562 * 3 2 1 5 5 C 1.47381 * 127.19391 * 179.97438 * 4 3 2 6 6 O 1.21612 * 120.00083 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99693 * 180.02562 * 5 4 3 8 8 C 1.46495 * 119.99613 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47161 * 173.57291 * 8 7 5 10 10 H 1.09000 * 109.99610 * 56.57144 * 9 8 7 11 11 C 1.54321 * 109.88544 * 177.67143 * 9 8 7 12 12 C 1.55160 * 102.94384 * 141.60874 * 11 9 8 13 13 C 1.54915 * 101.57800 * 324.49652 * 12 11 9 14 14 N 1.47026 * 109.87967 * 295.48000 * 9 8 7 15 15 C 1.36940 * 125.64956 * 61.68205 * 14 9 8 16 16 H 1.07994 * 120.00472 * 323.01037 * 15 14 9 17 17 C 1.38812 * 119.99640 * 143.00645 * 15 14 9 18 18 N 1.31615 * 119.99977 * 161.96005 * 17 15 14 19 19 Si 1.86802 * 120.00205 * 341.96021 * 17 15 14 20 20 H 1.48504 * 109.47258 * 91.72584 * 19 17 15 21 21 H 1.48497 * 109.47041 * 211.72509 * 19 17 15 22 22 H 1.48499 * 109.47309 * 331.72668 * 19 17 15 23 23 C 1.36420 * 105.61452 * 0.22567 * 4 3 2 24 24 O 1.33664 * 108.39163 * 359.63353 * 23 4 3 25 25 H 1.08999 * 109.47047 * 90.00063 * 1 2 3 26 26 H 1.08998 * 109.46631 * 210.00018 * 1 2 3 27 27 H 1.08997 * 109.47066 * 329.99622 * 1 2 3 28 28 H 1.08005 * 127.02319 * 0.02562 * 3 2 1 29 29 H 0.96998 * 120.00168 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47206 * 53.57600 * 8 7 5 31 31 H 1.09000 * 109.47688 * 293.57077 * 8 7 5 32 32 H 1.09008 * 110.71808 * 23.24388 * 11 9 8 33 33 H 1.09004 * 110.71991 * 259.97394 * 11 9 8 34 34 H 1.08992 * 111.00166 * 82.57086 * 12 11 9 35 35 H 1.09000 * 111.00497 * 206.42669 * 12 11 9 36 36 H 1.09001 * 110.35912 * 155.84831 * 13 12 11 37 37 H 1.08991 * 110.36849 * 278.05990 * 13 12 11 38 38 H 0.96996 * 120.00297 * 180.02562 * 18 17 15 39 39 H 1.07992 * 125.80549 * 179.75276 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6711 0.6029 -0.0006 5 6 4.9025 1.4126 -0.0014 6 8 4.8320 2.6267 -0.0020 7 7 6.1068 0.8075 -0.0024 8 6 7.3309 1.6124 -0.0038 9 6 8.5447 0.6949 0.1567 10 1 8.5504 -0.0572 -0.6322 11 6 9.8431 1.5270 0.0980 12 6 10.7410 0.8457 1.1643 13 6 9.6988 0.4437 2.2376 14 7 8.5055 0.0393 1.4722 15 6 7.5237 -0.8074 1.9130 16 1 6.4932 -0.6244 1.6468 17 6 7.8530 -1.9009 2.7020 18 7 6.9236 -2.5030 3.4133 19 14 9.6154 -2.5181 2.7543 20 1 10.3388 -1.8561 3.8695 21 1 9.6190 -3.9880 2.9653 22 1 10.2893 -2.2008 1.4696 23 6 3.5791 -0.7582 -0.0061 24 8 2.2852 -1.0935 -0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9595 2.1230 0.0004 29 1 6.1631 -0.1609 -0.0023 30 1 7.3000 2.3220 0.8230 31 1 7.4079 2.1552 -0.9458 32 1 9.6478 2.5657 0.3649 33 1 10.2993 1.4607 -0.8897 34 1 11.2374 -0.0333 0.7532 35 1 11.4681 1.5492 1.5700 36 1 10.0693 -0.3915 2.8320 37 1 9.4692 1.2934 2.8804 38 1 7.1538 -3.2669 3.9649 39 1 4.4103 -1.4476 -0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027848739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:39 Heat of formation + Delta-G solvation = 3.002645 kcal Electronic energy + Delta-G solvation = -21914.311671 eV Core-core repulsion = 18631.397623 eV Total energy + Delta-G solvation = -3282.914048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.30666 -39.06382 -37.76341 -33.99428 -32.88999 -32.70622 -31.87640 -30.01850 -29.33856 -26.58491 -25.11029 -24.10886 -22.52353 -20.93165 -20.70915 -19.80105 -19.02757 -17.66204 -16.72807 -16.23675 -16.05997 -15.63235 -15.23845 -14.71563 -14.36877 -14.08306 -13.52661 -13.16363 -13.07563 -12.99427 -12.91473 -12.58459 -12.52379 -12.31366 -11.98379 -11.70589 -11.38472 -11.31285 -10.94213 -10.72476 -10.50826 -10.22365 -9.89224 -9.63451 -9.50666 -9.47422 -8.63726 -8.45746 -8.28050 -6.87846 -6.08528 -3.54230 1.68919 2.25165 3.04139 3.26072 3.39850 3.45074 3.71412 3.89428 4.44397 4.75201 4.88756 4.99087 5.10014 5.16106 5.30681 5.38624 5.41017 5.41453 5.49592 5.62460 5.73715 5.86857 5.92597 5.94656 6.08298 6.11101 6.21895 6.25140 6.33222 6.38256 6.54580 6.57682 6.82813 6.84139 7.05242 7.22138 7.82162 8.13148 8.23666 8.71475 8.78750 9.56102 10.16658 11.05334 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.005534 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.601445 B = 5058.672229 C = 6264.344462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.027 4.027 3 C -0.163 4.163 4 C -0.231 4.231 5 C 0.583 3.417 6 O -0.558 6.558 7 N -0.704 5.704 8 C 0.118 3.882 9 C 0.142 3.858 10 H 0.048 0.952 11 C -0.121 4.121 12 C -0.136 4.136 13 C 0.115 3.885 14 N -0.601 5.601 15 C -0.258 4.258 16 H 0.089 0.911 17 C 0.036 3.964 18 N -0.899 5.899 19 Si 0.890 3.110 20 H -0.286 1.286 21 H -0.304 1.304 22 H -0.269 1.269 23 C 0.033 3.967 24 O -0.174 6.174 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.409 0.591 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.031 0.969 38 H 0.265 0.735 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 3.832 -8.351 10.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 C -0.183 4.183 4 C -0.235 4.235 5 C 0.371 3.629 6 O -0.438 6.438 7 N -0.356 5.356 8 C -0.008 4.008 9 C 0.035 3.965 10 H 0.066 0.934 11 C -0.160 4.160 12 C -0.174 4.174 13 C -0.009 4.009 14 N -0.327 5.327 15 C -0.386 4.386 16 H 0.106 0.894 17 C -0.166 4.166 18 N -0.540 5.540 19 Si 0.721 3.279 20 H -0.214 1.214 21 H -0.232 1.232 22 H -0.194 1.194 23 C -0.037 4.037 24 O -0.070 6.070 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.172 0.828 29 H 0.247 0.753 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -4.510 4.191 -8.204 10.257 hybrid contribution 1.220 -0.767 0.375 1.489 sum -3.290 3.424 -7.829 9.156 Atomic orbital electron populations 1.20267 0.85027 1.04038 1.03285 1.22229 0.94028 0.83904 1.07387 1.22424 0.90242 0.99376 1.06210 1.21534 0.94713 0.93330 1.13928 1.17254 0.82500 0.86913 0.76278 1.90708 1.87487 1.13847 1.51801 1.46017 1.04954 1.11293 1.73326 1.21926 0.84083 0.94393 1.00386 1.21301 0.91713 0.93274 0.90205 0.93398 1.22488 0.95402 0.99132 0.98929 1.22780 0.97473 0.99910 0.97284 1.21921 0.87731 0.97515 0.93740 1.44673 1.24773 1.53311 1.09964 1.18623 0.87564 1.01750 1.30659 0.89423 1.25471 0.97228 0.96029 0.97825 1.69811 1.33353 1.23102 1.27765 0.86722 0.86220 0.76587 0.78355 1.21420 1.23174 1.19397 1.24609 0.83977 0.95736 0.99427 1.83720 1.16646 1.35345 1.71272 0.90306 0.90522 0.89441 0.82754 0.75263 0.91578 0.92832 0.91223 0.91391 0.91641 0.91535 0.93899 0.95093 0.92515 0.76794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.40 36.01 0.37 -0.26 16 2 C -0.03 -0.38 7.28 -35.74 -0.26 -0.64 16 3 C -0.16 -2.58 10.90 -37.45 -0.41 -2.98 16 4 C -0.23 -4.12 6.31 -103.27 -0.65 -4.77 16 5 C 0.58 11.71 7.81 -12.54 -0.10 11.61 16 6 O -0.56 -12.69 16.97 5.27 0.09 -12.60 16 7 N -0.70 -13.38 4.33 -61.40 -0.27 -13.65 16 8 C 0.12 2.16 5.15 -4.04 -0.02 2.14 16 9 C 0.14 2.61 3.30 -66.95 -0.22 2.38 16 10 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 11 C -0.12 -1.83 6.48 -24.90 -0.16 -1.99 16 12 C -0.14 -2.23 7.09 -24.58 -0.17 -2.41 16 13 C 0.12 2.40 6.27 -2.53 -0.02 2.38 16 14 N -0.60 -13.46 2.65 -162.57 -0.43 -13.89 16 15 C -0.26 -6.65 9.47 -15.06 -0.14 -6.79 16 16 H 0.09 2.32 5.59 -52.49 -0.29 2.02 16 17 C 0.04 0.98 5.45 -17.43 -0.09 0.88 16 18 N -0.90 -26.06 13.97 55.49 0.78 -25.28 16 19 Si 0.89 21.59 24.97 -169.99 -4.25 17.34 16 20 H -0.29 -6.91 6.68 56.52 0.38 -6.53 16 21 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.03 0.52 11.61 30.08 0.35 0.87 16 24 O -0.17 -2.69 10.52 7.63 0.08 -2.61 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.15 2.24 8.06 -52.48 -0.42 1.82 16 29 H 0.41 7.63 5.35 -40.82 -0.22 7.41 16 30 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.98 7.85 -51.92 -0.41 0.58 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.97 3.28 -51.93 -0.17 0.80 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.22 3.06 7.47 -52.49 -0.39 2.67 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -32.39 319.14 -6.00 -38.39 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.29 Total: 7.04 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.53 Total: 0.44 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.08 Total: -52.82 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.17 Total: -15.21 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.25 Total: 17.34 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.39 -6.00 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027848739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.397 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds